Contig 001155:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010P11+                                             GCGAATTGCATCAGAGCTTTGTGCA
                      ____________________________________________________________
consensus                                                GCGAATTGCATCAGAGCTTTGTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010P11+          ATGCGGATGCGTCGAAAGAAGGTTTCCAGTTCGGGAAAGATGCATCTCTTCCCGAAACGT
                      ____________________________________________________________
consensus             ATGCGGATGCGTCGAAAGAAGGTTTCCAGTTCGGGAAAGATGCATCTCTTCCCGAAACGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010P11+          ATGTGAAATCGCCAAAGAAACCCCTTAGAGGAATCGGTGGGAAATCACTTTCCAGGCGAC
                      ____________________________________________________________
consensus             ATGTGAAATCGCCAAAGAAACCCCTTAGAGGAATCGGTGGGAAATCACTTTCCAGGCGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010P11+          ATAACCTCGCCTTCTTCGCGGGGAACACGCACGGTTATCTCCGCCCTATTCTGCTCCAAC
rJMFF036E09+                             GGGGAACATGCACGGTTATCTCCGCCCTATTCTGCTCCAAC
                      ____________________________________________________________
consensus             ATAACCTCGCCTTCTTCGCGGGGAACATGCACGGTTATCTCCGCCCTATTCTGCTCCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010P11+          ACTGGGAGAACAAAGATCCCGAGATGAAAATCTTTGGTCACGTGGACACAGCGGCCTACG
rJMFF036E09+          ACTGGGAGAACAAAGATCCCGAGATGAAAATCTTTGGTCACGTGGACACAGCGGCCTACG
                      ____________________________________________________________
consensus             ACTGGGAGAACAAAGATCCCGAGATGAAAATCTTTGGTCACGTGGACACAGCGGCCTACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010P11+          TCGACTACATGAAGAGCAGCAAGTACTGCATTTGTGCAAAGGGGTACGAAGTCAACAGCC
rJMFF036E09+          TCGACTACATGAAGAGCAGCAAGTACTGCATTTGTGCAAAGGGGTACGAAGTCAACAGCC
                      ____________________________________________________________
consensus             TCGACTACATGAAGAGCAGCAAGTACTGCATTTGTGCAAAGGGGTACGAAGTCAACAGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010P11+          CCCGCGTGGTGGAGGCCCTCTCCTACGAGTGCGTTCCCGTGATCATATCAGATAACTTCG
rJMFF036E09+          CCCGCGTGGTGGAGGCCCTCTCCTACGAGTGCGTTCCCGTGATCATATCAGATAACTTCG
                      ____________________________________________________________
consensus             CCCGCGTGGTGGAGGCCCTCTCCTACGAGTGCGTTCCCGTGATCATATCAGATAACTTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010P11+          TGCCCCCGTTTTTCGAGACGCTGAATTGGGAGTCCTTCACTGTTTTTGTCCCGGAGAAGG
rJMFF036E09+          TGCCCCCGTTTTTCGAGACGCTGAATTGGGAGTCCTTCACTGTTTTTGTCCCGGAGAAGG
                      ____________________________________________________________
consensus             TGCCCCCGTTTTTCGAGACGCTGAATTGGGAGTCCTTCACTGTTTTTGTCCCGGAGAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010P11+          ATATTCCGGACTTGAAGAACATCCTCAAATCTATCCCCGACAGAAGATTTCGGGAGATGC
rJMFF036E09+          ATATTCCGGACTTGAAGAACATCCTCAAATCTATCCCCGACAGAAGATTTCGGGAGATGC
                      ____________________________________________________________
consensus             ATATTCCGGACTTGAAGAACATCCTCAAATCTATCCCCGACAGAAGATTTCGGGAGATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010P11+          AGCGAAGGGTTAAGCTCGTGCAACAGCATTTCCTATGGCATATGAAACCCGTGAAATATG
rJMFF036E09+          AGCGAAGGGTTAAGCTCGTGCAACAGCATTTCCTATGGCATATGAAACCCGTGAAATATG
                      ____________________________________________________________
consensus             AGCGAAGGGTTAAGCTCGTGCAACAGCATTTCCTATGGCATATGAAACCCGTGAAATATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010P11+          ACGCCTTCCACATGATACTGCATTCGGTGTGGCACAACAGAGTTTTCGGGATAAGAACCG
rJMFF036E09+          ACGCCTTCCACATGATACTGCATTCGGTGTGGCACAACAGAGTTTTCGGGATAAGAACCG
                      ____________________________________________________________
consensus             ACGCCTTCCACATGATACTGCATTCGGTGTGGCACAACAGAGTTTTCGGGATAAGAACCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010P11+          GATGATAAATGTCATATATATACATGTGTTGTATATCCTGTGCATAAGAATTGTCTGTAG
rJMFF036E09+          GATGATAAATGTCATATATATACATGTGTTGTATATCCTGTGCATAAGAATTGTCTGTAG
                      ____________________________________________________________
consensus             GATGATAAATGTCATATATATACATGTGTTGTATATCCTGTGCATAAGAATTGTCTGTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010P11+          AGAATGTTGTAGATTATCTTTTTCCTGGAAAAGAATGTTGTAGATTATCTTTTAGAGAGG
rJMFF036E09+          AGAATGTTGTAGATTATCTTTTTCCTGGAAAAGAATGTTGTAGATTATCTTTTAGAGAGG
                      ____________________________________________________________
consensus             AGAATGTTGTAGATTATCTTTTTCCTGGAAAAGAATGTTGTAGATTATCTTTTAGAGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010P11+          ATCTGAT                                                     
rJMFF036E09+          ATCTGATTTGTTTTCTGTACAAAGATAATGTGGTATATAGTTGTTTTTTGGTGATTCATT
                      ____________________________________________________________
consensus             ATCTGATTTGTTTTCTGTACAAAGATAATGTGGTATATAGTTGTTTTTTGGTGATTCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF036E09+          GTGTTGGTTACCACATCTTCTTTGTTTGAGCAAGGCCTCTATGCCCAAAATGTTAGAAAT
                      ____________________________________________________________
consensus             GTGTTGGTTACCACATCTTCTTTGTTTGAGCAAGGCCTCTATGCCCAAAATGTTAGAAAT