Contig 001153:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016F03Sequence592017340ref|XP_009775943.1|2e-52PREDICTED: poly(U)-specific endoribonuclease-B [Nicotiana sylvestris]786001153 (3)ref|XP_009617663.1|1e-117PREDICTED: poly(U)-specific endoribonuclease-B [Nicotiana tomentosiformis]
JMFF036A06Sequence514017378ref|XP_009617663.1|5e-11PREDICTED: poly(U)-specific endoribonuclease-B [Nicotiana tomentosiformis]666001153 (3)ref|XP_006358620.1|3e-59PREDICTED: poly(U)-specific endoribonuclease-B-like [Solanum tuberosum]
JMFS026C06Sequence615001153 (3)ref|XP_006358620.1|3e-93PREDICTED: poly(U)-specific endoribonuclease-B-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMFF016F03+                                             GAGGGATATAAAGAAAATGTACCAG
                      ____________________________________________________________
consensus                                                GAGGGATATAAAGAAAATGTACCAG
 
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rJMFF016F03+          CTCAAGANCAGCAAGAGCAGTTGGCGTTCATAGAGGAGATCAGTAGAACTGCACCTATAA
                      ____________________________________________________________
consensus             CTCAAGANCAGCAAGAGCAGTTGGCGTTCATAGAGGAGATCAGTAGAACTGCACCTATAA
 
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JMFS026C06+                                                         CTATCAGGAGTTCA
rJMFF016F03+          AATATCTCCATAAGTATCTGTCAGCAAAGCGTATGGTTTCTGAAAACTATCAGGAGTTCA
                      ____________________________________________________________
consensus             AATATCTCCATAAGTATCTGTCAGCAAAGCGTATGGTTTCTGAAAACTATCAGGAGTTCA
 
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JMFS026C06+           AGAGAATGCTGAAAAGTCTCTGGTTTGACCTTTATGGCCGTGGTGGTACATCTGGTTCTT
rJMFF016F03+          AGAGAATGCTGAAAAGTCTCTGGTTTGACCTTTATGGCCGTGGTGGTACATCTGGTTCTT
                      ____________________________________________________________
consensus             AGAGAATGCTGAAAAGTCTCTGGTTTGACCTTTATGGCCGTGGTGGTACATCTGGTTCTT
 
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JMFS026C06+           CTTCTGCTTTTGAACATGTTTTTGTTGGAGAAATCAAACAGCGCGGAGAGGAAGAAGTTT
rJMFF016F03+          CTTCTGCTTTTGAACATGTTTTTGTTGGAGAAATCAAACAGCGCGGAGAGGAAGAAGTTT
                      ____________________________________________________________
consensus             CTTCTGCTTTTGAACATGTTTTTGTTGGAGAAATCAAACAGCGCGGAGAGGAAGAAGTTT
 
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JMFS026C06+           CAGGTTTCCATAATTGGCTTCAGTTCTATTTAGAGGAAGCAAAGGGCAATGTAGACTATC
rJMFF016F03+          CAGGTTTCCATAATTGGCTTCAGTTCTATTTAGAGGAAGCAAAGGGCAATGTAGACTATC
rJMFF036A06+                              CAGTTCTATTTAGAGGAAGCAAAGGGCAATGTAGACTATC
                      ____________________________________________________________
consensus             CAGGTTTCCATAATTGGCTTCAGTTCTATTTAGAGGAAGCAAAGGGCAATGTAGACTATC
 
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JMFS026C06+           AAGGATACATCTTTCCTCGAAGGCGGGGTGAAATTCCTGACTCGGAGACTCAGTTGCTCA
rJMFF016F03+          AAGGATACATCTTTCCTCGAAGGCGGGGTGAAATTCCTGACTCGGAGACTCAGTTGCTCA
rJMFF036A06+          AAGGATACATCTTTCCTCGAAGGCGGGGTGAAATTCCTGACTCGGAGACTCAGTTGCTCA
                      ____________________________________________________________
consensus             AAGGATACATCTTTCCTCGAAGGCGGGGTGAAATTCCTGACTCGGAGACTCAGTTGCTCA
 
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JMFS026C06+           CAATTCAGTTTGAATGGAACGGTGTACTGAAATCTGTATCAAGCACTTTGGTTCGAGTGA
rJMFF016F03+          CAATTCAGTTTGAATGGAACGGTGTACTGAAATCTGTATCAAGCACTTTGGTTGGAGTGA
rJMFF036A06+          CAATTCAGTTTGAATGGAACGGTGTACTGAAATCTGTATCAAGCACTTTGGTTGGAGTGA
                      ____________________________________________________________
consensus             CAATTCAGTTTGAATGGAACGGTGTACTGAAATCTGTATCAAGCACTTTGGTTGGAGTGA
 
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JMFS026C06+           GCCCGGAGTTTGAACTCGCCATCTATACTCTGTGTTTCTTTGCGGGAGGGCAGGAGAACC
rJMFF016F03+          GCCCGGAGTTTGAACTCGCCATCTATACTCTGTGTTTCTTTGCGGGAGGGCAGGAGAACC
rJMFF036A06+          GCCCGGAGTTTGAACTCGCCATCTATACTCTGTGTTTCTTTGCGGGAGGGCAGGAGAACC
                      ____________________________________________________________
consensus             GCCCGGAGTTTGAACTCGCCATCTATACTCTGTGTTTCTTTGCGGGAGGGCAGGAGAACC
 
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JMFS026C06+           ATGTTGAGCTTGGTCCATACTCTGTCAATATCAAGTGCTATCACCTGGGAGACAAAATTG
rJMFF016F03+          ATGTTGAGCTTGGTCCATACTCTGTCAATATCAAGTGCTATCACCTGGGAGACAAAATTG
rJMFF036A06+          ATGTTGAGCTTGGTCCATACTCTGTCAATATCAAGTGCTATCACCTGGGAGACAAAATTG
                      ____________________________________________________________
consensus             ATGTTGAGCTTGGTCCATACTCTGTCAATATCAAGTGCTATCACCTGGGAGACAAAATTG
 
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JMFS026C06+           GATCTGCTTTCCCAGTGGCTGAATGTTGAATATAAGGTAATCATATTTTATACCGTGTGA
rJMFF016F03+          GATCTGCTTTCCCAGTGGCTGAATGTTGAATATAAGGTAATCATATTTTATACCGTGTGA
rJMFF036A06+          GATCTGCTTTCCCAGTGGCTGAATGTTGAATATAAGGTAATCATATTTTATACCGTGTGA
                      ____________________________________________________________
consensus             GATCTGCTTTCCCAGTGGCTGAATGTTGAATATAAGGTAATCATATTTTATACCGTGTGA
 
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JMFS026C06+           AAACATACATAATTTACATCCAGATTTATCAAACACTTGTAAGAATATGTATTTCAAGGA
rJMFF016F03+          AAACATACATAATTTACATCCAGATTTATCAAACACTTGTAAGAATATGTATTTCAAGGA
rJMFF036A06+          AAACATACATAATTTACATCCAGATTTATCAAACACTTGTAAGAATATGTATTTCAAGGA
                      ____________________________________________________________
consensus             AAACATACATAATTTACATCCAGATTTATCAAACACTTGTAAGAATATGTATTTCAAGGA
 
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JMFS026C06+           AAGGTGTTGGGGCTTTATCTTTTC                                    
rJMFF016F03+          AAGGTGTTGGGGCTTTATCTTTTCAGTAAACATTGTTGGAACTCATGGTTTATCACTAAA
rJMFF036A06+          AAGGTGTTGGGGCTTTATCTTTTCAGTAAACATTGTTGGAACTCATGGTTTATCACTAAA
                      ____________________________________________________________
consensus             AAGGTGTTGGGGCTTTATCTTTTCAGTAAACATTGTTGGAACTCATGGTTTATCACTAAA
 
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rJMFF016F03+          CTTTACATGACATGTAATCTAGAGAAGTATTTTGGATATCA                   
rJMFF036A06+          CTTTACATGACATGTAATCTAGAGAAGTATTTTGGATATCAATGGATTGTTGGTTTCAAT
                      ____________________________________________________________
consensus             CTTTACATGACATGTAATCTAGAGAAGTATTTTGGATATCAATGGATTGTTGGTTTCAAT
 
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rJMFF036A06+          TAGGTTCATGTTATTTAAGAATAGGTGTGTAATTACTGGATTGACAAATAATTTACCACA
                      ____________________________________________________________
consensus             TAGGTTCATGTTATTTAAGAATAGGTGTGTAATTACTGGATTGACAAATAATTTACCACA