clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF035J01 | Sequence | 560 | 003582 (5) | emb|CDP19325.1| | 5e-66 | unnamed protein product [Coffea canephora] | 698 | 001150 (4) | ref|XP_006345040.1| | 1e-65 | PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum] |
JMFS037G12 | Sequence | 614 | 001150 (4) | ref|XP_006345040.1| | 2e-65 | PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum] | |||||
JMSF010N11 | Sequence | 170 | 003582 (5) | 769 | 001150 (4) | ref|XP_009623301.1| | 1e-90 | PREDICTED: RNA-dependent RNA polymerase 2 [Nicotiana tomentosiformis] | |||
JMSF013H05 | Sequence | 537 | 003582 (5) | emb|CDP19325.1| | 2e-63 | unnamed protein product [Coffea canephora] | 774 | 001150 (4) | ref|XP_009796585.1| | 4e-84 | PREDICTED: RNA-dependent RNA polymerase 2 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF010N11+ AAACAGGAGCTCCAGCTGAGATGCCGAGGTATTTGAANCC
rJMSF013H05+ CC
____________________________________________________________
consensus AAACAGGAGCTCCAGCTGAGATGCCGAGGTATTTGAANCC
. : . : . : . : . : . :
rJMSF010N11+ AAGGGAGTTACNGGATTTCCTGGAGAGATGGGACAAGCCAATGTACATCTCCAATGGTGC
rJMSF013H05+ AAGGGAGTTACCGGATTTCCNGGAGAGATGGGACAAGCCAATGTACATCTCCAATGGTGC
____________________________________________________________
consensus AAGGGAGTTACCGGATTTCCTGGAGAGATGGGACAAGCCAATGTACATCTCCAATGGTGC
. : . : . : . : . : . :
rJMSF010N11+ ACTGGGAAAACTTTATCGTGCTGTTAAGAAGTCAATCTTTAGTGGAGGAAGCTCAACCAA
rJMSF013H05+ ACTGGGAAAACTTTATCGTGCTGTTAAGAAGTCAATCTTTAGTGGAGGAAGCTCAACCAA
rJMFF035J01+ TGTTAAGAAGTCAATCTTTAGTGGAGGAAGCTCAACCAA
____________________________________________________________
consensus ACTGGGAAAACTTTATCGTGCTGTTAAGAAGTCAATCTTTAGTGGAGGAAGCTCAACCAA
. : . : . : . : . : . :
rJMSF010N11+ TCATACAACTACAGTGGCAGCCATTGAAAACGCTTATGATCATGATCTTATTGTGGATGG
rJMSF013H05+ TCATACAACTACAGTGGCAGCCATTGAAAACGCTTATGATCATGATCTTATTGTGGATGG
JMFS037G12- GTGGCAGCCATTGAAAACGCTTATGATCATGATCTTATTGTGGATGG
rJMFF035J01+ TCATACAANTACAGTGGCAGCCATTGAAAACGCTTATGATCATGATCTTATTGTGGATGG
____________________________________________________________
consensus TCATACAACTACAGTGGCAGCCATTGAAAACGCTTATGATCATGATCTTATTGTGGATGG
. : . : . : . : . : . :
rJMSF010N11+ TTATGAATCTTTCGTTCCAACTGCTGAAACTCACAAACAAATGTACATGGATAAACTGGG
rJMSF013H05+ TTATGAATCTTTCGTTCCAACTGCTGAAACTCACAAACAAATGTACATGGATAAACTGGG
JMFS037G12- TTATGAATCTTTCGTTCCAACTGCTGAAACTCACAAACAAATGTACATGGATAAACTGGG
rJMFF035J01+ TTATGAATCTTTCGTTCCAACTGCTGAAACTCACAAACAAATGTACATGGATAAACTGGG
____________________________________________________________
consensus TTATGAATCTTTCGTTCCAACTGCTGAAACTCACAAACAAATGTACATGGATAAACTGGG
. : . : . : . : . : . :
rJMSF010N11+ AAGCTTGCTGAACTACTATGGAGCAGAAACTGAAGTCGAGATACTGACTGGGAATTTGCG
rJMSF013H05+ AAGCTTGCTGAACTACTATGGAGCAGAAACTGAAGTCGAGATACTGACTGGGAATTTGCG
JMFS037G12- AAGCTTGCTGAACTACTATGGAGCAGAAACTGAAGTCGAGATACTGACTGGGAATTTGCG
rJMFF035J01+ AAGCTTGCTGAACTACTATGGAGCAGAAACTGAAGTCGAGATACTGACTGGGAATTTGCG
____________________________________________________________
consensus AAGCTTGCTGAACTACTATGGAGCAGAAACTGAAGTCGAGATACTGACTGGGAATTTGCG
. : . : . : . : . : . :
rJMSF010N11+ AAACAAGTCAACATATTTGCAGCGAGACAATAGGAGATTCTTTGAACTGAAGGATCGCAT
rJMSF013H05+ AAACAAGTCAACATATTTGCAGCGAGACAATAGGAGATTCTTTGAACTGAAGGATCGCAT
JMFS037G12- AAACAAGTCAACATATTTGCAGCGAGACAATAGGAGATTCTTTGAACTGAAGGATCGCAT
rJMFF035J01+ AAACAAGTCAACATATTTGCAGCGAGACAATAGGAGATTCTTTGAACTGAAGGATCGCAT
____________________________________________________________
consensus AAACAAGTCAACATATTTGCAGCGAGACAATAGGAGATTCTTTGAACTGAAGGATCGCAT
. : . : . : . : . : . :
rJMSF010N11+ CTTGGTTTCTGCCAAGAGCCTACACAAGGAGGCCAAAGGGTGGTTTCACAGCAGCTGCGA
rJMSF013H05+ CTTGGTTTCTGCCAAGAGCCTACACAAGGAGGCCAAAGGGTGGTTTCACAGCAGCTGCGA
JMFS037G12- CTTGGTTTCTGCCAAGAGCCTACACAAGGAGGCCAAAGGGTGGTTTCACAGCAGCTGCGA
rJMFF035J01+ CTTGGTTTCTGCCAAGAGCCTACACAAGGAGGCCAAAGGGTGGTTTCACAGCAGCTGCGA
____________________________________________________________
consensus CTTGGTTTCTGCCAAGAGCCTACACAAGGAGGCCAAAGGGTGGTTTCACAGCAGCTGCGA
. : . : . : . : . : . :
rJMSF010N11+ CGAGAGCAGTGAATCTAAGAAACTGGCATCAGCTTGGTATTTTGTGACATATCACCCCAG
rJMSF013H05+ CGAGAGCAGTGAATCTAAGAAACTGGCATCAGCTTGGTATTTTGTGACATATCACCCCAG
JMFS037G12- CGAGAGCAGTGAATCTAAGAAACTGGCATCAGCTTGGTATTTTGTGACATATCACCCCAG
rJMFF035J01+ CGAGAGCAGTGAATCTAAGAAACTGGCATCAGCTTGGTATTTTGTGACATATCACCCCAG
____________________________________________________________
consensus CGAGAGCAGTGAATCTAAGAAACTGGCATCAGCTTGGTATTTTGTGACATATCACCCCAG
. : . : . : . : . : . :
rJMSF010N11+ CTATTGTAAAACAAGTGCTAATTGTCTTGGCTTTCCCTGGATTGTTGGTGATATTTTGCT
rJMSF013H05+ CTATTGTAAAACAAGTGCTAATTGTCTTGGCTTTCCCTGGATTGTTGGTGATATTTTGCT
JMFS037G12- CTATTGTAAAACAAGTGCTAATTGTCTTGGCTTTCCCTGGATTGTTGGTGATATTTTGCT
rJMFF035J01+ CTATTGTAAAACAAGTGCTAATTGTCTTGGCTTTCCCTGGATTGTTGGTGATATTTTGCT
____________________________________________________________
consensus CTATTGTAAAACAAGTGCTAATTGTCTTGGCTTTCCCTGGATTGTTGGTGATATTTTGCT
. : . : . : . : . : . :
rJMSF010N11+ GGAAATCAAGTCACTTAAAAGCTGAACCAAGCTCTGCTCTGCTCCTAGGATGGATATCTA
rJMSF013H05+ GGAAATCAAGTCACTTAAAAGCTGAACCAAGCTCTGCTCTGCTCCTAGGATGGATATCTA
JMFS037G12- GGAAATCAAGTCACTTAAAAGCTGAACCAAGCTCTGCTCTGCTCCTAGGATGGATATCTA
rJMFF035J01+ GGAAATCAAGTCACTTAAAAGCTGAACCAAGCTCTGCTCTGCTCCTAGGATGGATATCTA
____________________________________________________________
consensus GGAAATCAAGTCACTTAAAAGCTGAACCAAGCTCTGCTCTGCTCCTAGGATGGATATCTA
. : . : . : . : . : . :
rJMSF010N11+ GTAGACATTGCAACTTCATCACTATGAAGGAATAACTATTAACCTTATCTGTTGTATCTT
rJMSF013H05+ GTAGACATTGCAACTTCATCACTATGAAGGAATAACTATTAACCTTATCTGTTGTATCTT
JMFS037G12- GTAGACATTGCAACTTCATCACTATGAAGGAATAACTATTAACCTTATCTGTTGTATCTT
rJMFF035J01+ GTAGACATTGCAACTTCATCACTATGAAGGAATAACTATTAACCTTATCTGTTGTATCTT
____________________________________________________________
consensus GTAGACATTGCAACTTCATCACTATGAAGGAATAACTATTAACCTTATCTGTTGTATCTT
. : . : . : . : . : . :
rJMSF010N11+ GTGTTTGCTCTAAGTATGACTCTTGTTATTATGTTGTAATAATATTAGAGTGAAAACCCA
rJMSF013H05+ GTGTTTGCTCTAAGTATGACTCTTGTTATTATGTTGTAATAATATTAGAGTGAAAACCCA
JMFS037G12- GTGTTTGCTCTAAGTATGACTCTTGTTATTATGTTGTAATAATATTAGAGTGAAAACCCA
rJMFF035J01+ GTGTTTGCTCTAAGTATGACTCTTGTTATTATGTTGTAATAATATTAGAGTGAAAACCCA
____________________________________________________________
consensus GTGTTTGCTCTAAGTATGACTCTTGTTATTATGTTGTAATAATATTAGAGTGAAAACCCA
. : . : . : . : . : . :
rJMSF010N11+ TCAAATGTT
rJMSF013H05+ TCAAATGTTCTAANCATGGGTGAATTGGGATATTAAAAATCGATATCCA
JMFS037G12- TCAAATGTTCTAA
rJMFF035J01+ TCAAATGTTCTAA-CATGGGTGAATTGGGATATTAAAAATCGATATCCAAGTGCTTAGGT
____________________________________________________________
consensus TCAAATGTTCTAANCATGGGTGAATTGGGATATTAAAAATCGATATCCAAGTGCTTAGGT