Contig 001147:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032F16Sequence534001147 (5)gb|KJB57200.1|1e-04hypothetical protein B456_009G153300 [Gossypium raimondii]500001147 (5)gb|KJB57200.1|1e-04hypothetical protein B456_009G153300 [Gossypium raimondii]
JMFF034C16Sequence534001147 (5)gb|KJB57200.1|1e-04hypothetical protein B456_009G153300 [Gossypium raimondii]500001147 (5)gb|KJB57200.1|1e-04hypothetical protein B456_009G153300 [Gossypium raimondii]
JMFN013K05Sequence615001147 (5)gb|KJB57200.1|2e-04hypothetical protein B456_009G153300 [Gossypium raimondii]

Alignment

This contig is upended


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JMFN013K05+                        TTTTAACTAGTATTACATAATTAAGACAGTACATAAGACATTACATA
                      ____________________________________________________________
consensus                          TTTTAACTAGTATTACATAATTAAGACAGTACATAAGACATTACATA
 
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JMFN013K05+           ATTTTATAATTGCATGTTTCTTTCGCTACCCCAAAAGAGATACACTGATCCCCAAACCCC
                      ____________________________________________________________
consensus             ATTTTATAATTGCATGTTTCTTTCGCTACCCCAAAAGAGATACACTGATCCCCAAACCCC
 
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JMFN013K05+           CAAACACACGGTCTCTAGACCAAAAGTTAAGGAAAAATGTATATATAGCATGGTGTTACT
JMFF032F16+                            GACCAAAAGTTAAGGAAAAATGTATATATAGCATGGTGTTACT
JMFF034C16+                            GACCAAAAGTTAAGGAAAAATGTATATATAGCATGGTGTTACT
rJMFF032F16-                                                  ATATATAGCATGGTGTTACT
rJMFF034C16-                                                  ATATATAGCATGGTGTTACT
                      ____________________________________________________________
consensus             CAAACACACGGTCTCTAGACCAAAAGTTAAGGAAAAATGTATATATAGCATGGTGTTACT
 
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JMFN013K05+           GAAGAAAAATTGAAGCTTGGGGTAGCTCAAACATGTACACCTTATTAATTAAAATCTTGA
JMFF032F16+           GAAGAAAAATTGAAGCTTGGGGTAGCTCAAACATGTACACCTTATTAATTAAAATCTTGA
JMFF034C16+           GAAGAAAAATTGAAGCTTGGGGTAGCTCAAACATGTACACCTTATTAATTAAAATCTTGA
rJMFF032F16-          GAAGAAAAATTGAAGCTTGGGGTAGCTCAAACATGTACACCTTATTAATTAAAATCTTGA
rJMFF034C16-          GAAGAAAAATTGAAGCTTGGGGTAGCTCAAACATGTACACCTTATTAATTAAAATCTTGA
                      ____________________________________________________________
consensus             GAAGAAAAATTGAAGCTTGGGGTAGCTCAAACATGTACACCTTATTAATTAAAATCTTGA
 
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JMFN013K05+           AATGCGAAAAAACATTTCCAAAAAATGAGTAATTAACAGTTTTTATCTCACAATATTTCA
JMFF032F16+           AATGCGAAAAAACATTTCCGAAAAATGAGTAATTAACAGTTTTTATCTCACAATATTTCA
JMFF034C16+           AATGCGAAAAAACATTTCCGAAAAATGAGTAATTAACAGTTTTTATCTCACAATATTTCA
rJMFF032F16-          AATGCGAAAAAACATTTCCGAAAAATGAGTAATTAACAGTTTTTATCTCACAATATTTCA
rJMFF034C16-          AATGCGAAAAAACATTTCCGAAAAATGAGTAATTAACAGTTTTTATCTCACAATATTTCA
                      ____________________________________________________________
consensus             AATGCGAAAAAACATTTCCGAAAAATGAGTAATTAACAGTTTTTATCTCACAATATTTCA
 
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JMFN013K05+           ATGTACCTATTTATCAATGCATACGACACAAGAGAAAGAACCAGAGGAACCATGTAGAAT
JMFF032F16+           ATGTACCTATTTATCAATGCATACGACACAAGAGAAAGAACCAGAGGAACCATGTAGAAT
JMFF034C16+           ATGTACCTATTTATCAATGCATACGACACAAGAGAAAGAACCAGAGGAACCATGTAGAAT
rJMFF032F16-          ATGTACCTATTTATCAATGCATACGACACAAGAGAAAGAACCAGAGGAACCATGTAGAAT
rJMFF034C16-          ATGTACCTATTTATCAATGCATACGACACAAGAGAAAGAACCAGAGGAACCATGTAGAAT
                      ____________________________________________________________
consensus             ATGTACCTATTTATCAATGCATACGACACAAGAGAAAGAACCAGAGGAACCATGTAGAAT
 
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JMFN013K05+           ACTTTAGTGCCGCCGCTGCTGGTGATGCTGTTTCCGGCGCCGGTGGCGGCGGGCGACGGA
JMFF032F16+           ACTTTAGTGCCGCCGCTGCTGGTGATGCTGTTTCCGGCGCCGGTGGCGGCGGGCGACGGA
JMFF034C16+           ACTTTAGTGCCGCCGCTGCTGGTGATGCTGTTTCCGGCGCCGGTGGCGGCGGGCGACGGA
rJMFF032F16-          ACTTTAGTGCCGCCGCTGCTGGTGATGCTGTTTCCGGCGCCGGTGGCGGCGGGCGACGGA
rJMFF034C16-          ACTTTAGTGCCGCCGCTGCTGGTGATGCTGTTTCCGGCGCCGGTGGCGGCGGGCGACGGA
                      ____________________________________________________________
consensus             ACTTTAGTGCCGCCGCTGCTGGTGATGCTGTTTCCGGCGCCGGTGGCGGCGGGCGACGGA
 
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JMFN013K05+           AAATTCCCCTCTTCGAAGATGGTATCCAACGTGGGAACGTTGGAAATCTTCCGCGGAGTA
JMFF032F16+           AAATTCCCCTCTTCGAAGATGGTATCCAACGTGGGAACGTTGGAAATCTTCCGCGGAGTA
JMFF034C16+           AAATTCCCCTCTTCGAAGATGGTATCCAACGTGGGAACGTTGGAAATCTTCCGCGGAGTA
rJMFF032F16-          AAATTCCCCTCTTCGAAGATGGTATCCAACGTGGGAACGTTGGAAATCTTCCGCGGAGTA
rJMFF034C16-          AAATTCCCCTCTTCGAAGATGGTATCCAACGTGGGAACGTTGGAAATCTTCCGCGGAGTA
                      ____________________________________________________________
consensus             AAATTCCCCTCTTCGAAGATGGTATCCAACGTGGGAACGTTGGAAATCTTCCGCGGAGTA
 
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JMFN013K05+           ATCAGGGCCGACGGTGCAACCTCGAAAGTCCTTCGCCGGAACCTCATTATTAGCCTGCGA
JMFF032F16+           ATCAGGGCCGACGGTGCAACCTCGAAAGTCCTTCGCCGGAACCTCATTATTAGCCTGCGA
JMFF034C16+           ATCAGGGCCGACGGTGCAACCTCGAAAGTCCTTCGCCGGAACCTCATTATTAGCCTGCGA
rJMFF032F16-          ATCAGGGCCGACGGTGCAACCTCGAAAGTCCTTCGCCGGAACCTCATTATTAGCCTGCGA
rJMFF034C16-          ATCAGGGCCGACGGTGCAACCTCGAAAGTCCTTCGCCGGAACCTCATTATTAGCCTGCGA
                      ____________________________________________________________
consensus             ATCAGGGCCGACGGTGCAACCTCGAAAGTCCTTCGCCGGAACCTCATTATTAGCCTGCGA
 
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JMFN013K05+           TGCATGGTGATGATTGTCGTCGGAATATTGCTCCGGCTTTGGCGATCTTGCCACCCTCCT
JMFF032F16+           TGCATGGTGATGATTGTCGTCGGAATATTGCTCCGGCTTTGGCGATCTTGCCACCCTCCT
JMFF034C16+           TGCATGGTGATGATTGTCGTCGGAATATTGCTCCGGCTTTGGCGATCTTGCCACCCTCCT
rJMFF032F16-          TGCATGGTGATGATTGTCGTCGGAATATTGCTCCGGCTTTGGCGATCTTGCCACCCTCCT
rJMFF034C16-          TGCATGGTGATGATTGTCGTCGGAATATTGCTCCGGCTTTGGCGATCTTGCCACCCTCCT
                      ____________________________________________________________
consensus             TGCATGGTGATGATTGTCGTCGGAATATTGCTCCGGCTTTGGCGATCTTGCCACCCTCCT
 
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JMFN013K05+           CTCCGGAGAGAGTGTCCTCTGCTCTTCA                                
JMFF032F16+           CTCCGGAGAGAGTGTCCTCTGCTCTTCAGGGCAAATGACCGGAGAAGAGAAGACTTTGGC
JMFF034C16+           CTCCGGAGAGAGTGTCCTCTGCTCTTCAGGGCAAATGACCGGAGAAGAGAAGACTTTGGC
rJMFF032F16-          CTCCGGAGAGAGTGTCCTCTGCTCTTCAGGGCAAATGACCGGAGAAGAGAAGACTTTGGC
rJMFF034C16-          CTCCGGAGAGAGTGTCCTCTGCTCTTCAGGGCAAATGACCGGAGAAGAGAAGACTTTGGC
                      ____________________________________________________________
consensus             CTCCGGAGAGAGTGTCCTCTGCTCTTCAGGGCAAATGACCGGAGAAGAGAAGACTTTGGC