Contig 001140:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006P05Sequence580011776 (5)ref|XP_009768347.1|2e-21PREDICTED: uncharacterized protein DDB_G0274915 isoform X1 [Nicotiana sylvestri800001140 (2)ref|XP_006360453.1|5e-80PREDICTED: nuclear pore complex protein Nup98-Nup96-like isoform X3 [Solanum tu
JMFF032E16Sequence580011776 (5)ref|XP_009768347.1|2e-21PREDICTED: uncharacterized protein DDB_G0274915 isoform X1 [Nicotiana sylvestri799001140 (2)ref|XP_006360453.1|4e-77PREDICTED: nuclear pore complex protein Nup98-Nup96-like isoform X3 [Solanum tu

Alignment

This contig is upended


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rJMFF006P05+                                            ATCCAAGAGCTGGCAGCAAAGGAAAG
rJMFF032E16+                                                   AGCTGGCAGCAAAGGAAAG
                      ____________________________________________________________
consensus                                               ATCCAAGAGCTGGCAGCAAAGGAAAG
 
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rJMFF006P05+          GGCTGAACCTGGGTTTTGCCGTCGCGTGAAAGATTTCATTGTGGGAAGGCATGGCTTTGG
rJMFF032E16+          GGCTGANCCTGGGTTTTGCCGTCGCGTGAAAGATTTCATTGTGGGAAGGCATGGCTTTGG
                      ____________________________________________________________
consensus             GGCTGAACCTGGGTTTTGCCGTCGCGTGAAAGATTTCATTGTGGGAAGGCATGGCTTTGG
 
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rJMFF006P05+          TAGCATAAAATTCATTGGGGAAACAGATGTACGAAGGCTTGATCTGGAGTCTATTGTTCA
rJMFF032E16+          TAGCATAAAATTCATTGGGGAAACAGATGTACGAAGGCTTGATCTGGAGTCTATTGTTCA
                      ____________________________________________________________
consensus             TAGCATAAAATTCATTGGGGAAACAGATGTACGAAGGCTTGATCTGGAGTCTATTGTTCA
 
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rJMFF006P05+          ATTCAACAATCGGGAGGTAGAAGTGTACATGGATGAGAGCAAAAAACCACCTGTTGGACA
rJMFF032E16+          ATTCAACAATCGGGAGGTAGAAGTGTACATGGATGAGAGCAAAAAACCACCTGTTGGACA
                      ____________________________________________________________
consensus             ATTCAACAATCGGGAGGTAGAAGTGTACATGGATGAGAGCAAAAAACCACCTGTTGGACA
 
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rJMFF006P05+          AGGTCTTAACAAACCTGCTGAGGTTACACTCCTCAACATAAAATGTCATGACAAGAAGAC
rJMFF032E16+          AGGTCTTAACAAACCTGCTGAGGTTACACTCCTCAACATAAAATGTCATGACAAGAAGAC
                      ____________________________________________________________
consensus             AGGTCTTAACAAACCTGCTGAGGTTACACTCCTCAACATAAAATGTCATGACAAGAAGAC
 
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rJMFF006P05+          TGGGCGTCACTTCACTGATGGGCCAATAGTTGAGAGGTATAAAAAGGTGCTTATAAGTAA
rJMFF032E16+          TGGGCGTCACTTCACTGATGGGCCAATAGTTGAGAGGTATAAAAAGGTGCTTATAAGTAA
                      ____________________________________________________________
consensus             TGGGCGTCACTTCACTGATGGGCCAATAGTTGAGAGGTATAAAAAGGTGCTTATAAGTAA
 
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rJMFF006P05+          GGCAGTGGATCAAGGTGCTGAATTTTTGTCCTTTGATCCAATCAAAGGAGAATGGAGGTT
rJMFF032E16+          GGCAGTGGATCAAGGTGCTGAATTTTTGTCCTTTGATCCAATCAAAGGAGAATGGAGGTT
                      ____________________________________________________________
consensus             GGCAGTGGATCAAGGTGCTGAATTTTTGTCCTTTGATCCAATCAAAGGAGAATGGAGGTT
 
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rJMFF006P05+          TAGGGTCAAACATTTCAGCAAATACTGGGTTCGAGATGAAGATGAGGAGAGTTGCATTAG
rJMFF032E16+          TAGGGTCAAACATTTCAGCAAATACTGGGTTCGAGATGAAGATGAGGAGAGTTGCATTAG
                      ____________________________________________________________
consensus             TAGGGTCAAACATTTCAGCAAATACTGGGTTCGAGATGAAGATGAGGAGAGTTGCATTAG
 
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rJMFF006P05+          TGTCTGTCTCAGTGATGCAGAGGAGGTAGAGTTAATCTCGAACCCAGACGAGGAGTGTTG
rJMFF032E16+          TGTCTGTCTCAGTGATGCAGAGGAGGTAGAGTTAATCTCGAACCCAGACGAGGAGTGTTG
                      ____________________________________________________________
consensus             TGTCTGTCTCAGTGATGCAGAGGAGGTAGAGTTAATCTCGAACCCAGACGAGGAGTGTTG
 
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rJMFF006P05+          CACTATTTTTAATCTCAGTGAAGCAGAGAAGCTAGAGTTAATTTTGGAACCATCTATCTC
rJMFF032E16+          CACTATTTTTAATCTCAGTGAAGCAGAGAAGCTAGAGTTAATTTTGGAACCATCTATCTC
                      ____________________________________________________________
consensus             CACTATTTTTAATCTCAGTGAAGCAGAGAAGCTAGAGTTAATTTTGGAACCATCTATCTC
 
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rJMFF006P05+          ATAGACTTTCAGTGATTGCAGTGTTGGAAGAACTTAATATCAATTTTTTGGTTTTTTTTC
rJMFF032E16+          ATAGACTTTCAGTGATTGCAGTGTTGGAAGAACTTAATATCAATTTTTTGGTTTTTTTTC
                      ____________________________________________________________
consensus             ATAGACTTTCAGTGATTGCAGTGTTGGAAGAACTTAATATCAATTTTTTGGTTTTTTTTC
 
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rJMFF006P05+          GGGTGAAATCCATTGGGGATGGCCGGACAGGGTACTGATCCTCATCGGTAATGCTTTGTT
rJMFF032E16+          GGGTGAAATCCATTGGGGATGGCCGGACAGGGTACTGATCCTCATCGGTAATGCTTTGTT
                      ____________________________________________________________
consensus             GGGTGAAATCCATTGGGGATGGCCGGACAGGGTACTGATCCTCATCGGTAATGCTTTGTT
 
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rJMFF006P05+          GTTGTTGGTCCCTCTCTTCTATACGCTTTCTTACCATTTTTCAGCTATTGGTTTAGGATT
rJMFF032E16+          GTTGTTGGTCCCTCTCTTCTATACGCTTTCTTACCATTTTTCAGCTATTGGTTTAGGATT
                      ____________________________________________________________
consensus             GTTGTTGGTCCCTCTCTTCTATACGCTTTCTTACCATTTTTCAGCTATTGGTTTAGGATT
 
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rJMFF006P05+          TGTATCGTTTCTGTACACAAAGATTTGTGTATATTGGACGCTTTTGGTGTGCAT      
rJMFF032E16+          TGTATCGTTTCTGTACACAAAGATTTGTGTATATTGGACGCTTTTGGTGTGCATTCAGTG
                      ____________________________________________________________
consensus             TGTATCGTTTCTGTACACAAAGATTTGTGTATATTGGACGCTTTTGGTGTGCATTCAGTG