Contig 001138:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031O11Sequence486003489 (5)ref|XP_009623685.1|7e-54PREDICTED: cyclin-T1-5-like [Nicotiana tomentosiformis]798001138 (4)ref|XP_009623685.1|4e-19PREDICTED: cyclin-T1-5-like [Nicotiana tomentosiformis]
JMSF015L10Sequence584003489 (5)ref|XP_009623685.1|2e-73PREDICTED: cyclin-T1-5-like [Nicotiana tomentosiformis]776001138 (4)ref|XP_009623685.1|3e-19PREDICTED: cyclin-T1-5-like [Nicotiana tomentosiformis]
JMSF024O20Sequence666003489 (5)ref|XP_009623685.1|6e-89PREDICTED: cyclin-T1-5-like [Nicotiana tomentosiformis]777001138 (4)ref|XP_009623685.1|3e-19PREDICTED: cyclin-T1-5-like [Nicotiana tomentosiformis]
JMSF045N13Sequence829003489 (5)ref|XP_009623685.1|1e-126PREDICTED: cyclin-T1-5-like [Nicotiana tomentosiformis]741001138 (4)ref|XP_009623685.1|2e-19PREDICTED: cyclin-T1-5-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF015L10+                                                    AAAACAGCACTGCACAAT
                      ____________________________________________________________
consensus                                                       AAAACAGCACTGCACAAT
 
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rJMSF015L10+          CCAGCATCACTATTGATTCAGCCAAAGAGAATANTCAGAAAAAAGAGCTTCTGTCAATGT
rJMSF045N13+                                                 AAAAAGAGCTTCTGTCAATGT
rJMSF024O20+            AGCATCACTATTGATTCAGCCNAAGAGAATATTCAG-AAAAAGAGCTTCTGTCAATGT
rJMFF031O11+            AGCATCACTATTGATTCAGCCAAAGAGAATAATCAGAAAAAAGAGCTTCTGTCAATGT
                      ____________________________________________________________
consensus             CCAGCATCACTATTGATTCAGCCAAAGAGAATATTCAGAAAAAAGAGCTTCTGTCAATGT
 
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rJMSF015L10+          GTGGTGGATCTACTCAATCAGAAGCTGTGTCTCATAGCAAAAAGCCATGCATTTCAAGTA
rJMSF045N13+          GTGGTGGATCTACTCAATCAGAAGCTGTGTCTCATAGCAAAAAGCCATGCATTTCAAGTA
rJMSF024O20+          GTGGTGGATCTACTCAATCAGAAGCTGTGTCTCATAGCAAAAAGCCATGCATTTCAAGTA
rJMFF031O11+          GTGGTGGATCTACTCAATCAGAAGCTGTGTCTCATAGCAAAAAGCCATGCATTTCAAGTA
                      ____________________________________________________________
consensus             GTGGTGGATCTACTCAATCAGAAGCTGTGTCTCATAGCAAAAAGCCATGCATTTCAAGTA
 
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rJMSF015L10+          GTTCAGTTATTGCTCAGGATTCTAGCTGTACATCAACGGTGCAGACTGGAGTGCTTCCTA
rJMSF045N13+          GTTCAGTTATTGCTCAGGATTCTAGCTGTACATCAACGGTGCAGACTGGAGTGCTTCCTA
rJMSF024O20+          GTTCAGTTATTGCTCAGGATTCTAGCTGTACATCAACGGTGCAGACTGGAGTGCTTCCTA
rJMFF031O11+          GTTCAGTTATTGCTCAGGATTCTAGCTGTACATCAACGGTGCAGACTGGAGTGCTTCCTA
                      ____________________________________________________________
consensus             GTTCAGTTATTGCTCAGGATTCTAGCTGTACATCAACGGTGCAGACTGGAGTGCTTCCTA
 
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rJMSF015L10+          AAAGTGCGATCTCCAGAAACAGCAGTGAACCGTCAAACGCTGTTGTTGAGTCTATCTACG
rJMSF045N13+          AAAGTGCGATCTCCAGAAACAGCAGTGAACCGTCAAACGCTGTTGTTGAGTCTATCTACG
rJMSF024O20+          AAAGTGCGATCTCCAGAAACAGCAGTGAACCGTCAAACGCTGTTGTTGAGTCTATCTACG
rJMFF031O11+          AAAGTGCGATCTCCAGAAACAGCAGTGAACCGTCAAACGCTGTTGTTGAGTCTATCTACG
                      ____________________________________________________________
consensus             AAAGTGCGATCTCCAGAAACAGCAGTGAACCGTCAAACGCTGTTGTTGAGTCTATCTACG
 
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rJMSF015L10+          AGAAGGAGCATTTGGATATTAGTGATTGTGGTAGTGCAAATAGTGTAGTTGAGGATGGTA
rJMSF045N13+          AGAAGGAGCATTTGGATATTAGTGATTGTGGTAGTGCAAATAGTGTAGTTGAGGATGGTA
rJMSF024O20+          AGAAGGAGCATTTGGATATTAGTGATTGTGGTAGTGCAAATAGTGTAGTTGAGGATGGTA
rJMFF031O11+          AGAAGGAGCATTTGGATATTAGTGATTGTGGTAGTGCAAATAGTGTAGTTGAGGATGGTA
                      ____________________________________________________________
consensus             AGAAGGAGCATTTGGATATTAGTGATTGTGGTAGTGCAAATAGTGTAGTTGAGGATGGTA
 
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rJMSF015L10+          GCAGTGAGCCTAGAATGGGACAGGCCAAACAAGAACCTTGCAACACTGTTTCTGCTGAAG
rJMSF045N13+          GCAGTGAGCCTAGAATGGGACAGGCCAAACAAGAACCTTGCAACACTGTTTCTGCTGAAG
rJMSF024O20+          GCAGTGAGCCTAGAATGGGACAGGCCAAACAAGAACCTTGCAACACTGTTTCTGCTGAAG
rJMFF031O11+          GCAGTGAGCCTAGAATGGGACAGGCCAAACAAGAACCTTGCAACACTGTTTCTGCTGAAG
                      ____________________________________________________________
consensus             GCAGTGAGCCTAGAATGGGACAGGCCAAACAAGAACCTTGCAACACTGTTTCTGCTGAAG
 
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rJMSF015L10+          AGCCCAAGAGGAAGATAGATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTGG
rJMSF045N13+          AGCCCAAGAGGAAGATAGATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTGG
rJMSF024O20+          AGCCCAAGAGGAAGATAGATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTGG
rJMFF031O11+          AGCCCAAGAGGAAGATAGATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTGG
                      ____________________________________________________________
consensus             AGCCCAAGAGGAAGATAGATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTGG
 
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rJMSF015L10+          ACAAAACTATGCACAAGAAAGTAGAGATGGACGATGAGATAGACAGTGAGGCGTGGATTG
rJMSF045N13+          ACAAAACTATGCACAAGAAAGTAGAGATGGACGATGAGATAGACAGTGAGGCGTGGATTG
rJMSF024O20+          ACAAAACTATGCACAAGAAAGTAGAGATGGACGATGAGATAGACAGTGAGGCGTGGATTG
rJMFF031O11+          ACAAAACTATGCACAAGAAAGTAGAGATGGACGATGAGATAGACAGTGAGGCGTGGATTG
                      ____________________________________________________________
consensus             ACAAAACTATGCACAAGAAAGTAGAGATGGACGATGAGATAGACAGTGAGGCGTGGATTG
 
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rJMSF015L10+          AGAGAGAACTTGAAAAACCTTGCAACATTGTTTGTGCTGAAGGCCCCAAGAGGAAGATAG
rJMSF045N13+          AGAGAGAACTTGAAAAACCTTGCAACATTGTTTGTGCTGAAGGCCCCAAGAGGAAGATAG
rJMSF024O20+          AGAGAGAACTTGAAAAACCTTGCAACATTGTTTGTGCTGAAGGCCCCAAGAGGAAGATAG
rJMFF031O11+          AGAGAGAACTTGAAAAACCTTGCAACATTGTTTGTGCTGAAGGCCCCAAGAGGAAGATAG
                      ____________________________________________________________
consensus             AGAGAGAACTTGAAAAACCTTGCAACATTGTTTGTGCTGAAGGCCCCAAGAGGAAGATAG
 
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rJMSF015L10+          ATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTTGACAGAACTACACACAAGA
rJMSF045N13+          ATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTTGACAGAACTACACACAAGA
rJMSF024O20+          ATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTTGACAGAACTACACACAAGA
rJMFF031O11+          ATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTTGACAGAACTACACACAAGA
                      ____________________________________________________________
consensus             ATGTTCATCGTATCAAAGAGACACTAAAGAGGAGAAAATTTGACAGAACTACACACAAGA
 
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rJMSF015L10+          AAGTAGTGATGGGCAATGAGATAGACAGCGAGGCATGGATTGAGAGAGAACTTGAAAATC
rJMSF045N13+          AAGTAGTGATGGGCAATGAGATAGACAGCGAGGCATGGATTGAGAGAGAACTTGAAAATC
rJMSF024O20+          AAGTAGTGATGGGCAATGAGATAGACAGCGAGGCATGGATTGAGAGAGAACTTGAAAATC
rJMFF031O11+          AAGTAGTGATGGGCAATGAGATAGACAGCGAGGCATGGATTGAGAGAGAACTTGAAAATC
                      ____________________________________________________________
consensus             AAGTAGTGATGGGCAATGAGATAGACAGCGAGGCATGGATTGAGAGAGAACTTGAAAATC
 
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rJMSF015L10+          TAGAATAGACCCTGATTTGAAATGTACATGTAAGCACGACAAGGGAAAAGCCCTGGTTTA
rJMSF045N13+          TAGAATAGACCCTGATTTGAAATGTACATGTAAGCACGACAAGGGAAAAGCCCTGGTTTA
rJMSF024O20+          TAGAATAGACCCTGATTTGAAATGTACATGTAAGCACGACAAGGGAAAAGCCCTGGTTTA
rJMFF031O11+          TAGAATAGACCCTGATTTGAAATGTACATGTAAGCACGACAAGGGAAAAGCCCTGGTTTA
                      ____________________________________________________________
consensus             TAGAATAGACCCTGATTTGAAATGTACATGTAAGCACGACAAGGGAAAAGCCCTGGTTTA
 
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rJMSF015L10+          GAATGTAC                                                    
rJMSF045N13+          GAATGTACACGTAAGCAGAAC                                       
rJMSF024O20+          GAATGTAC                                                    
rJMFF031O11+          GAATGTACACGTAAGCAGAACAAGAGTAACGTACAGATTGAGTTCTATGAGGAAATCAAT
                      ____________________________________________________________
consensus             GAATGTACACGTAAGCAGAACAAGAGTAACGTACAGATTGAGTTCTATGAGGAAATCAAT