| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP016G09 | Sequence | 611 | 001134 (7) | gb|ABR25526.1| | 4e-122 | 26S protease regulatory subunit 8 [Oryza sativa Indica Group] | |||||
| JMFF030F04 | Sequence | 381 | 013255 (6) | ref|XP_009599866.1| | 3e-60 | PREDICTED: 26S protease regulatory subunit 8 homolog A [Nicotiana tomentosiform | 741 | 001134 (7) | gb|ABR25526.1| | 2e-120 | 26S protease regulatory subunit 8 [Oryza sativa Indica Group] |
| JMFF030F15 | Sequence | 174 | 013255 (6) | ref|XP_006338168.1| | 9e-12 | PREDICTED: 26S protease regulatory subunit 8 homolog A-like [Solanum tuberosum] | 698 | 001134 (7) | gb|ABR25526.1| | 2e-115 | 26S protease regulatory subunit 8 [Oryza sativa Indica Group] |
| JMFF048K18 | Sequence | 440 | 013255 (6) | ref|XP_009599866.1| | 1e-58 | PREDICTED: 26S protease regulatory subunit 8 homolog A [Nicotiana tomentosiform | 253 | 001134 (7) | gb|EAZ01563.1| | 3e-04 | hypothetical protein OsI_23594 [Oryza sativa Indica Group] |
| JMSF009G10 | Sequence | 466 | 013255 (6) | ref|XP_009599866.1| | 6e-69 | PREDICTED: 26S protease regulatory subunit 8 homolog A [Nicotiana tomentosiform | 709 | 001134 (7) | gb|ABR25526.1| | 1e-130 | 26S protease regulatory subunit 8 [Oryza sativa Indica Group] |
| JMSF020I20 | Sequence | 663 | 013255 (6) | ref|XP_006338168.1| | 3e-105 | PREDICTED: 26S protease regulatory subunit 8 homolog A-like [Solanum tuberosum] | 773 | 001134 (7) | ref|XP_006287833.1| | 4e-149 | hypothetical protein CARUB_v10001052mg [Capsella rubella] gb|EOA20731.1| hypothe |
| JMSF044E23 | Sequence | 798 | 013255 (6) | ref|XP_009599866.1| | 1e-134 | PREDICTED: 26S protease regulatory subunit 8 homolog A [Nicotiana tomentosiform | 778 | 001134 (7) | gb|ABR25526.1| | 1e-129 | 26S protease regulatory subunit 8 [Oryza sativa Indica Group] |
This contig is upended
. : . : . : . : . : . :
rJMSF020I20+ CTGGAATTGCCCAACCAAAGGGAGTACTGCTTTATGG
____________________________________________________________
consensus CTGGAATTGCCCAACCAAAGGGAGTACTGCTTTATGG
. : . : . : . : . : . :
rJMSF020I20+ ACCTCCAGGAACTGGGAAACACTGTTGGCAAGAGCTGTTGCACATCATACTGATTGTACC
____________________________________________________________
consensus ACCTCCAGGAACTGGGAAACACTGTTGGCAAGAGCTGTTGCACATCATACTGATTGTACC
. : . : . : . : . : . :
rJMSF020I20+ TTCATTAGGGTTTCTGGCTCTGAACTAGTGCAAAAATATATTGGAGAAGGCTCTCGAATG
rJMSF044E23+ AAATATATTGGAGAAGGCTCTCGAATG
rJMSF009G10+ CAAAAATATATTGGAGAAGGCTCTCGAATG
____________________________________________________________
consensus TTCATTAGGGTTTCTGGCTCTGAACTAGTGCAAAAATATATTGGAGAAGGCTCTCGAATG
. : . : . : . : . : . :
rJMSF020I20+ GTGAGAGAACTTTTTGTAATGGCCAGAGAACATGCTCCGTCTATTATATTTATGGATGAA
JMCP016G09- GTGAGAGAACTTTTTGTAATGGCCAGAGAACATGCTCCGTCTATTATATTTATGGATGAA
rJMSF044E23+ GTGAGAGAACTTTTTGTAATGGCCAGAGAACATGCTCCGTCTATTATATTTATGGATGAA
rJMFF030F04+ GTGAGAGANCTTTTTGTAATGGCCAGAGAACATGCTCCGTCTATTATATTTATGGATGAA
rJMSF009G10+ GTGAGAGAACTTTTTGTAATGGCCAGAGAACATGCTCCGTCTATTATATTTATGGATGAA
rJMFF030F15+ CCAGAGAACATGCTCCGTCTATTATATTTATGGATGAA
____________________________________________________________
consensus GTGAGAGAACTTTTTGTAATGGCCAGAGAACATGCTCCGTCTATTATATTTATGGATGAA
. : . : . : . : . : . :
rJMSF020I20+ ATTGATAGCATTGGGTCAGCTAGAATGGAATCAGGAAGTGGGAATGGTGACAGTGAAGTG
JMCP016G09- ATTGATAGCATTGGGTCAGCTAGAATGGAATCAGGAAGTGGGAATGGTGACAGTGAAGTG
rJMSF044E23+ ATTGATAGCATTGGGTCAGCTAGAATGGAATCAGGAAGTGGGAATGGTGACAGTGAAGTG
rJMFF030F04+ ATTGATAGCATTGGGTCAGCTAGAATGGAATCAGGAAGTGGGAATGGTGACAGTGAAGTG
rJMSF009G10+ ATTGATAGCATTGGGTCAGCTAGAATGGAATCAGGAAGTGGGAATGGTGACAGTGAAGTG
rJMFF030F15+ ATTGATAGCATTGGGTCAGCTAGAATGGAATCAGGAAGTGGGAATGGTGACAGTGAAGTG
____________________________________________________________
consensus ATTGATAGCATTGGGTCAGCTAGAATGGAATCAGGAAGTGGGAATGGTGACAGTGAAGTG
. : . : . : . : . : . :
rJMSF020I20+ CAACGCACAATGCTTGAGCTCCTTAACCAGCTTGATGGATTTGAGGCATCAAACAAGATC
JMCP016G09- CAACGCACAATGCTTGAGCTCCTTAACCAGCTTGATGGATTTGAGGCATCAAACAAGATC
rJMSF044E23+ CAACGCACAATGCTTGAGCTCCTTAACCAGCTTGATGGATTTGAGGCATCAAACAAGATC
rJMFF030F04+ CAACGCACAATGCTTGAGCTCCTTAACCAGCTTGATGGATTTGAGGCATCAAACAAGATC
rJMSF009G10+ CAACGCACAATGCTTGAGCTCCTTAACCAGCTTGATGGATTTGAGGCATCAAACAAGATC
rJMFF030F15+ CAACGCACAATGCTTGAGCTCCTTAACCAGCTTGATGGATTTGAGGCATCAAACAAGATC
____________________________________________________________
consensus CAACGCACAATGCTTGAGCTCCTTAACCAGCTTGATGGATTTGAGGCATCAAACAAGATC
. : . : . : . : . : . :
rJMSF020I20+ AAGGTATTGATGGCCACAAACCGTATAGATATTCTGGATCAGGCCCTTCTCAGACCAGGA
JMCP016G09- AAGGTATTGATGGCCACAAACCGTATAGATATTCTGGATCAGGCCCTTCTCAGACCAGGA
rJMSF044E23+ AAGGTATTGATGGCCACAAACCGTATAGATATTCTGGATCAGGCCCTTCTCAGACCAGGA
rJMFF030F04+ AAGGTATTGATGGCCACAAACCGTATAGATATTCTGGATCAGGCCCTTCTCAGACCAGGA
rJMSF009G10+ AAGGTATTGATGGCCACAAACCGTATAGATATTCTGGATCAGGCCCTTCTCAGACCAGGA
rJMFF030F15+ AAGGTATTGATGGCCACAAACCGTATAGATATTCTGGATCAGGCCCTTCTCAGACCAGGA
____________________________________________________________
consensus AAGGTATTGATGGCCACAAACCGTATAGATATTCTGGATCAGGCCCTTCTCAGACCAGGA
. : . : . : . : . : . :
rJMSF020I20+ AGAATTGACCGAAAAATTGAATTTCCAAATCCGAATGAAGAGTCTCGCTGGGATATCTTG
JMCP016G09- AGAATTGACCGAAAAATTGAATTTCCAAATCCGAATGAAGAGTCTCGCTGGGATATCTTG
rJMSF044E23+ AGAATTGACCGAAAAATTGAATTTCCAAATCCGAATGAAGAGTCTCGCTGGGATATCTTG
rJMFF030F04+ AGAATTGACCGAAAAATTGAATTTCCAAATCCGAATGAAGAGTCTCGCTGGGATATCTTG
rJMSF009G10+ AGAATTGACCGAAAAATTGAATTTCCAAATCCGAATGAAGAGTCTCGCTGGGATATCTTG
rJMFF030F15+ AGAATTGACCGAAAAATTGAATTTCCAAATCCGAATGAAGAGTCTCGCTGGGATATCTTG
____________________________________________________________
consensus AGAATTGACCGAAAAATTGAATTTCCAAATCCGAATGAAGAGTCTCGCTGGGATATCTTG
. : . : . : . : . : . :
rJMSF020I20+ AAGATTCATTCTAGGAAAATGAACTTGATGCGTGGGATTGATCTAAAGAAGATAGCAGAA
JMCP016G09- AAGATTCATTCTAGGAAAATGAACTTGATGCGTGGGATTGATCTAAAGAAGATAGCAGAA
rJMSF044E23+ AAGATTCATTCTAGGAAAATGAACTTGATGCGTGGGATTGATCTAAAGAAGATAGCAGAA
rJMFF030F04+ AAGATTCATTCTAGGAAAATGAACTTGATGCGTGGGATTGATCTAAAGAAGATAGCAGAA
rJMSF009G10+ AAGATTCATTCTAGGAAAATGAACTTGATGCGTGGGATTGATCTAAAGAAGATAGCAGAA
rJMFF030F15+ AAGATTCATTCTAGGAAAATGAACTTGATGCGTGGGATTGATCTAAAGAAGATAGCAGAA
____________________________________________________________
consensus AAGATTCATTCTAGGAAAATGAACTTGATGCGTGGGATTGATCTAAAGAAGATAGCAGAA
. : . : . : . : . : . :
rJMSF020I20+ AAGATGAATGGTGCTTCTGGTGCCGAACTTAAGGCTGTTTGTACTGAAGCGGGGATGTTT
JMCP016G09- AAGATGAATGGTGCTTCTGGTGCCGAACTTAAGGCTGTTTGTACTGAAGCGGGGATGTTT
rJMSF044E23+ AAGATGAATGGTGCTTCTGGTGCCGAACTTAAGGCTGTTTGTACTGAAGCGGGGATGTTT
rJMFF030F04+ AAGATGAATGGTGCTTCTGGTGCCGAACTTAAGGCTGTTTGTACTGAAGCGGGGATGTTT
rJMSF009G10+ AAGATGAATGGTGCTTCTGGTGCCGAACTTAAGGCTGTTTGTACTGAAGCGGGGATGTTT
rJMFF030F15+ AAGATGAATGGTGCTTCTGGTGCCGAACTTAAGGCTGTTTGTACTGAAGCGGGGATGTTT
____________________________________________________________
consensus AAGATGAATGGTGCTTCTGGTGCCGAACTTAAGGCTGTTTGTACTGAAGCGGGGATGTTT
. : . : . : . : . : . :
rJMSF020I20+ GCTCTACGAGAAAGGAGGGTCCACGTGACACAGGAAGATTTTGAGATGGCAGTGGCGAAG
JMCP016G09- GCTCTACGAGAAAGGAGGGTCCACGTGACACAGGAAGATTTTGAGATGGCAGTGGCGAAG
rJMSF044E23+ GCTCTACGAGAAAGGAGGGTCCACGTGACACAGGAAGATTTTGAGATGGCAGTGGCGAAG
rJMFF030F04+ GCTCTACGAGAAAGGAGGGTCCACGTGACACAGGAAGATTTTGAGATGGCAGTGGCGAAG
rJMSF009G10+ GCTCTACGAGAAAGGAGGGTCCACGTGACACAGGAAGATTTTGAGATGGCAGTGGCGAAG
rJMFF048K18+ GATGGCAGTGGCGAAG
rJMFF030F15+ GCTCTACGAGAAAGGAGGGTCCACGTGACACAGGAAGATTTTGAGATGGCAGTGGCGAAG
____________________________________________________________
consensus GCTCTACGAGAAAGGAGGGTCCACGTGACACAGGAAGATTTTGAGATGGCAGTGGCGAAG
. : . : . : . : . : . :
rJMSF020I20+ GTGATGAAGAAGGATACAGAGAAGAACATGTCATTGCGCAAGCTATGGAAGTAAGTAATT
JMCP016G09- GTGATGAAGAAGGATACAGAGAAGAACATGTCATTGCGCAAGCTATGGAAGTAAGTAATT
rJMSF044E23+ GTGATGAAGAAGGATACAGAGAAGAACATGTCATTGCGCAAGCTATGGAAGTAA
rJMFF030F04+ GTGATGAAGAAGGATACAGAGAAGAACATGTCATTGCGCAAGCTATGGAAGTAA
rJMSF009G10+ GTGATGAAGAAGGATACAGAGAAGAACATGTCATTGCGCAAGCTATGGAAGTAAGTAATT
rJMFF048K18+ GTGATGAAGAAGGATACAGAGAAGAACATGTCATTGCGCAAGCTATGGAAGTAAGTAATT
rJMFF030F15+ GTGATGAAGAAGGATACAGAGAAGAACATGTCATTGCGCAAGCTATGGAAGTAAGTAATT
____________________________________________________________
consensus GTGATGAAGAAGGATACAGAGAAGAACATGTCATTGCGCAAGCTATGGAAGTAAGTAATT
. : . : . : . : . : . :
rJMSF020I20+ GAGACGTAGGTCGTCCCAGTTGTCATCTGGCAACACCGAATGCTTGCTAGTTTTTGAGTC
JMCP016G09- GAGACGTAGGTCGTCCCAGTTGTCATCTGGCAACACCGAATGCTTGCTAGTTTTTGAGTC
rJMSF009G10+ GAGACGTAGGTCGTCCCAGTTGTCATCTGGCAACACCGAATGCTTGCTAGTTTTTGAGTC
rJMFF048K18+ GAGACGTAGGTCGTCCCAGTTGTCATCTGGCAACACCGAATGCTTGCTAGTTTTTGAGTC
rJMFF030F15+ GAGACGTAGGTCGTCCCAGTTGTCATCTGGCAACACCGAATGCTTGCTAGTTTTTGAGTC
____________________________________________________________
consensus GAGACGTAGGTCGTCCCAGTTGTCATCTGGCAACACCGAATGCTTGCTAGTTTTTGAGTC
. : . : . : . : . : . :
rJMSF020I20+ AGACTTGGAAGAAATT
JMCP016G09- AGACTTGGAAG
rJMSF009G10+ AGACTTGGAAGAAATTGTGTATGTTTTTACGATGCATAACGCACGAATGTACCCGTCCTA
rJMFF048K18+ AGACTTGGAAGAAATTGTGTATGTTTTTACGATGCATAACGCACGAATGTACCCGTCCTA
rJMFF030F15+ AGACTTGGAAGAAATTGTGTATGTTTTTACGATGCATAACGCACGAATGTACCCGTCCTA
____________________________________________________________
consensus AGACTTGGAAGAAATTGTGTATGTTTTTACGATGCATAACGCACGAATGTACCCGTCCTA
. : . : . : . : . : . :
rJMSF009G10+ TTAAATAC
rJMFF048K18+ TTAAATACAGTTTTACACTTCTTGTTAACTGCTCACAAAACAATCAAAACGTTACGC
rJMFF030F15+ TTAAATACAGTTTTACACTTCTTGTTAACTGCTCACAAAACAATCNAAACGTTACGCAAA
____________________________________________________________
consensus TTAAATACAGTTTTACACTTCTTGTTAACTGCTCACAAAACAATCAAAACGTTACGCAAA