Contig 001129:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029D08Sequence481001129 (2)ref|XP_009798302.1|3e-44PREDICTED: CASP-like protein 5C1 [Nicotiana sylvestris]799001129 (2)ref|XP_006423156.1|2e-61hypothetical protein CICLE_v10029477mg [Citrus clementina] ref|XP_006479356.1| P

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF029D08-                                   TTTGGGATCATGAAGGCGTGGTGGAGCTTGTGAAAG
                      ____________________________________________________________
consensus                                     TTTGGGATCATGAAGGCGTGGTGGAGCTTGTGAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF029D08-           TTGGAGTCACAGGCCGATGCGGACGACGTGGAATGCGATTGCTGTTGCCGCCATCATATC
                      ____________________________________________________________
consensus             TTGGAGTCACAGGCCGATGCGGACGACGTGGAATGCGATTGCTGTTGCCGCCATCATATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF029D08-           ACTCTCGTCTTCACCGTCGATCAGTTAAAATTCTGCAGCGAATTTATATTTATATCGCGT
rJMFF029D08+                                                   ATTTATATTTATATCGCGT
                      ____________________________________________________________
consensus             ACTCTCGTCTTCACCGTCGATCAGTTAAAATTCTGCAGCGAATTTATATTTATATCGCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF029D08-           ACGTAGGTTCTGGTAGGGTATGGCGATGAATGAAGACGTACCGGGCGCTGTGGGGACAGG
rJMFF029D08+          ACGTAGGTTTTGGTAGGGTATGGCGATGAATGAAGACGTACCGGGCGCTGTGGGGACAGG
                      ____________________________________________________________
consensus             ACGTAGGTTTTGGTAGGGTATGGCGATGAATGAAGACGTACCGGGCGCTGTGGGGACAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF029D08-           AGCGAGCTTTGCTTTGAGATTGGGGCAGGCCGCCTTCTCAACCGCCTCTCTTCTTTTCAT
rJMFF029D08+          AGCGAGCTTTGCTTTGAGATTGGGGCAGGCCGCCTTCTCAACCGCCTCTCTTCTTTTCAT
                      ____________________________________________________________
consensus             AGCGAGCTTTGCTTTGAGATTGGGGCAGGCCGCCTTCTCAACCGCCTCTCTTCTTTTCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF029D08-           GTCTTTAGGAGTTGAATTCTATAGTTACACTGCCTTCTGCTTCTTGGTAACAATCATGGG
rJMFF029D08+          GTCTTTAGGAGTTGAATTCTATAGTTACACTGCCTTCTGCTTCTTGGTAACAATCATGGG
                      ____________________________________________________________
consensus             GTCTTTAGGAGTTGAATTCTATAGTTACACTGCCTTCTGCTTCTTGGTAACAATCATGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF029D08-           TTTGGTCATTCCCTGGAGTGTCACTTTGGCACTGGTTGATGGATACTCTCTGCTCATCAA
rJMFF029D08+          TTTGGTCATTCCCTGGAGTGTCACTTTGGCACTGGTTGATGGATACTCTCTGCTCATCAA
                      ____________________________________________________________
consensus             TTTGGTCATTCCCTGGAGTGTCACTTTGGCACTGGTTGATGGATACTCTCTGCTCATCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF029D08-           GTGCCCCATTCGTCAGCTGGGAATTCTGCTGGTCATCATCCTGGGAGATTGGGCGTTATC
rJMFF029D08+          GTGCCCCATTCGTCAGCTGGGAATTCTGCTGGTCATCATCCTGGGAGATTGGGCGTTATC
                      ____________________________________________________________
consensus             GTGCCCCATTCGTCAGCTGGGAATTCTGCTGGTCATCATCCTGGGAGATTGGGCGTTATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF029D08-           GNTCCTCACCCTGGCGGCAGCTAGC                                   
rJMFF029D08+          GTTCCTCACCCTGGCGGCAGCTAGCTCCACTGCGGGTGTTGTGGATCTTCTCTTGAAAAC
                      ____________________________________________________________
consensus             GTTCCTCACCCTGGCGGCAGCTAGCTCCACTGCGGGTGTTGTGGATCTTCTCTTGAAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029D08+          GGATGAAGCATTGTGTCCTTCAAAGCTATGCAATAGATATCAAATATCTGCAGCAATGGC
                      ____________________________________________________________
consensus             GGATGAAGCATTGTGTCCTTCAAAGCTATGCAATAGATATCAAATATCTGCAGCAATGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029D08+          CTTCCTTACATGGTTTCTTTCCATGACTTCATCACTTTCCAATCTTTGGCTACTTCCTTC
                      ____________________________________________________________
consensus             CTTCCTTACATGGTTTCTTTCCATGACTTCATCACTTTCCAATCTTTGGCTACTTCCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029D08+          CTTGTGATGATTGTTAGTTGATTTTGTACACCTCACTAATTTACACCCAAAATGTATTCT
                      ____________________________________________________________
consensus             CTTGTGATGATTGTTAGTTGATTTTGTACACCTCACTAATTTACACCCAAAATGTATTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029D08+          TCTTGCGCACAAACTTTGCAGAAGTCGGGAGAAACTAGGAAAAAAAACAACACACACACA
                      ____________________________________________________________
consensus             TCTTGCGCACAAACTTTGCAGAAGTCGGGAGAAACTAGGAAAAAAAACAACACACACACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029D08+          GACAATTGTATGTCGAGATTTTGCCTGGTAACAAGAAATGGCTCCTATTAGATGTCTTTG
                      ____________________________________________________________
consensus             GACAATTGTATGTCGAGATTTTGCCTGGTAACAAGAAATGGCTCCTATTAGATGTCTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029D08+          GGTGCCCAAAATGCAAAATCCATATGGATCATTGTATATTTGTACGCAGTCAAATTATTC
                      ____________________________________________________________
consensus             GGTGCCCAAAATGCAAAATCCATATGGATCATTGTATATTTGTACGCAGTCAAATTATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF029D08+          TTGATTGTTGTAAAGATACTTTCAAATCCCCGGTAAACGGCGCCGTTTTATCAATCCAAT
                      ____________________________________________________________
consensus             TTGATTGTTGTAAAGATACTTTCAAATCCCCGGTAAACGGCGCCGTTTTATCAATCCAAT