Contig 001125:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027B24Sequence673001125 (3)ref|XP_010914080.1|1e-22PREDICTED: serine/arginine-rich splicing factor RSZ21A isoform X2 [Elaeis guine
JMFS055C08Sequence495001125 (3)
JMSF020B02Sequence641001125 (3)

Alignment

This contig is upended


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JMFS055C08+                                 GACTCTTACTCAAAGAAACTTTTTTTTTTTTTTTTAAT
JMSF020B02+                                                          TTTTTTTTTTAAT
                      ____________________________________________________________
consensus                                   GACTCTTACTCAAAGAAACTTTTTTTTTTTTTTTTAAT
 
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JMFS055C08+           GATGCACGCATACAAGAACCACTTGATAAAATGGGAACAATGCAGACTAGAAAAAACAAC
JMSF020B02+           GATGCACGCATACAAGAACCACTTGATAAAATGGGAACAATGCNGACTAGAAAAAACAAC
                      ____________________________________________________________
consensus             GATGCACGCATACAAGAACCACTTGATAAAATGGGAACAATGCAGACTAGAAAAAACAAC
 
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JMFS055C08+           ATAAAAAGTTGTAACAACATAAAAAGTTATTCATGGAAGAAAGGCAGGCAATTTGTAGTT
JMSF020B02+           ATAAAAAGTTGTAACAACATAAAAAGTTATTCATGGAAGAAAGGCAGGCAATTTGTAGTT
                      ____________________________________________________________
consensus             ATAAAAAGTTGTAACAACATAAAAAGTTATTCATGGAAGAAAGGCAGGCAATTTGTAGTT
 
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JMFS055C08+           TCATATGATCCTTTTGCTGCTATTCACTCCATTATGAGCCTTAGCGTCTCGATTGGCACA
JMSF020B02+           TCATATGATCCTTTTGNTGCTATTCACTCCNTTATGAGCCTTAGCGTNTCGATTGGCACA
                      ____________________________________________________________
consensus             TCATATGATCCTTTTGCTGCTATTCACTCCATTATGAGCCTTAGCGTCTCGATTGGCACA
 
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JMFS055C08+           TCAAAACTCGATGTGGTTTAAGGAGAACATCAACTCCCCAACTAATGGCTGAACCATTTG
JMSF020B02+           TCAAAACTCGATGTGGTTTAAGGAGAACATCAACTCCCCAACTAATGGNTGAACCATTTG
                      ____________________________________________________________
consensus             TCAAAACTCGATGTGGTTTAAGGAGAACATCAACTCCCCAACTAATGGCTGAACCATTTG
 
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JMFS055C08+           AAGCTGCTTGTTGCTAAAACGAACTTAAAGTAACGCCACTATAAAGCTGAGGCGAGGAGC
JMSF020B02+           AAGCTGCTTGTTGCTAAAACGAACTTAAAGTAACGCCNCTATAAAGNTGAGGCGAGGAGC
                      ____________________________________________________________
consensus             AAGCTGCTTGTTGCTAAAACGAACTTAAAGTAACGCCACTATAAAGCTGAGGCGAGGAGC
 
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JMFS055C08+           ATAATAACTGCAGAGAATCACTCAAAGAAGAACATAGCAATGTGGGTAGCCGGGGTCAAC
JMSF020B02+           ATAATAACTGCAGAGAATCACTCAAAGAAGAACATAGCAATGTGGGTAGCCGGGGTCAAC
                      ____________________________________________________________
consensus             ATAATAACTGCAGAGAATCACTCAAAGAAGAACATAGCAATGTGGGTAGCCGGGGTCAAC
 
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JMFS055C08+           AATCAATCGAAATTGAAGATCCCACAGCTGGGCAGTGAAGAACGAAACCACAGGGGAGTG
JMSF020B02+           AATCAATNGAAATTGAAGATCCCACAGCTGGGCAGTGAAGAACGAAACCNCAGGGGAGTG
                      ____________________________________________________________
consensus             AATCAATCGAAATTGAAGATCCCACAGCTGGGCAGTGAAGAACGAAACCACAGGGGAGTG
 
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JMFS055C08+           CAGAAGCAGAAAACCAAGGAAGCAGACAAGC                             
JMSF020B02+           CAGAAGCAGAAAACCAAGGAAGCAGACAAGCNGTNGACACCTCAACNCAAAAAACAAAAA
                      ____________________________________________________________
consensus             CAGAAGCAGAAAACCAAGGAAGCAGACAAGCNGTNGACACCTCAACNCAAAAAACAAAAA
 
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JMSF020B02+           ACATAAACNTGCTNCCNTGAGATCCAACGACCTAAATTCAAAATAAGTAGTTCCTAGATA
rJMFF027B24-                           TGAGATCCAACGACCTAAATTCAAAATAAGTAGTTCCTAGATA
                      ____________________________________________________________
consensus             ACATAAACNTGCTNCCNTGAGATCCAACGACCTAAATTCAAAATAAGTAGTTCCTAGATA
 
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JMSF020B02+           GAAGCCNCAAGATTAAAAAAAAAATACACTCGGAATCATAACCAGTAACCAATCCACCAG
rJMFF027B24-          GAAGCCACAAGATTAAAAAAAAAATACACTCGGAATCATAACCAGTAACCAATCCACCAG
                      ____________________________________________________________
consensus             GAAGCCACAAGATTAAAAAAAAAATACACTCGGAATCATAACCAGTAACCAATCCACCAG
 
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JMSF020B02+           ATGAAGTAAAGGGGGCGGCCCCACTTAC                                
rJMFF027B24-          ATGAAGTAAAGGGGGCGGCCCCACTTACACAGTTGTGGATCATGTCCAATGATATTAGAT
                      ____________________________________________________________
consensus             ATGAAGTAAAGGGGGCGGCCCCACTTACACAGTTGTGGATCATGTCCAATGATATTAGAT
 
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rJMFF027B24-          ACACAACTTCAAAAGGTTCAAGACTGCATCTGGCAATTATCTTCCCACTCTTGAGCTCCT
                      ____________________________________________________________
consensus             ACACAACTTCAAAAGGTTCAAGACTGCATCTGGCAATTATCTTCCCACTCTTGAGCTCCT
 
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rJMFF027B24-          GCTTATGTGGCGATCCCCGAGGCTTTTTCCATTAGTATAAGAAACTTCATCTCTTCCACG
                      ____________________________________________________________
consensus             GCTTATGTGGCGATCCCCGAGGCTTTTTCCATTAGTATAAGAAACTTCATCTCTTCCACG
 
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rJMFF027B24-          GTATGGGGATCGGCTGGAGTTGCGGTCACGAGGTGACAAACTGCGGCGCCTAGGANAATG
                      ____________________________________________________________
consensus             GTATGGGGATCGGCTGGAGTTGCGGTCACGAGGTGACAAACTGCGGCGCCTAGGANAATG
 
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rJMFF027B24-          ACCACGAGGGCTGGAAGTCCTTTGACCATAGCTTGGGCTCCTCCGATATCTAGGGGGAGT
                      ____________________________________________________________
consensus             ACCACGAGGGCTGGAAGTCCTTTGACCATAGCTTGGGCTCCTCCGATATCTAGGGGGAGT
 
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rJMFF027B24-          GCGGACTCCGACGTTTTCCTGCACCTCCACGCTGCCGGCACTCACGAGCAAAATGGCCTG
                      ____________________________________________________________
consensus             GCGGACTCCGACGTTTTCCTGCACCTCCACGCTGCCGGCACTCACGAGCAAAATGGCCTG
 
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rJMFF027B24-          GTTCACCACACTCATAGCACTTCGAGTCGGAACCACCANAGTGACCGCGACCATGCCCAC
                      ____________________________________________________________
consensus             GTTCACCACACTCATAGCACTTCGAGTCGGAACCACCANAGTGACCGCGACCATGCCCAC
 
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rJMFF027B24-          GCCCACCCCCACCTCCACCTCTAGAATTGTGAGAGAGTTCAATTTTCCAACCATTCTTAC
                      ____________________________________________________________
consensus             GCCCACCCCCACCTCCACCTCTAGAATTGTGAGAGAGTTCAATTTTCCAACCATTCTTAC
 
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rJMFF027B24-          CATCTAGTTCACGGATTGCATCTTGAGCATCTCTTCGGTCATCAAAATCAATGAAAGCAT
                      ____________________________________________________________
consensus             CATCTAGTTCACGGATTGCATCTTGAGCATCTCTTCGGTCATCAAAATCAATGAAAGCAT