Contig 001124:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017J16Sequence639000575 (7)ref|XP_009762245.1|1e-102PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c753001124 (6)ref|XP_009759585.1|4e-72PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c
JMFF027A10Sequence617000575 (7)ref|XP_009762245.1|2e-103PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c734001124 (6)ref|XP_009759585.1|4e-86PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c
JMFF039D21Sequence484000575 (7)ref|XP_009762245.1|4e-74PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c632001124 (6)ref|XP_009759585.1|1e-72PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c
JMSF025N24Sequence667000575 (7)ref|XP_010320594.1|2e-110PREDICTED: dehydroquinate dehydratase/shikimate:NADP oxidoreductase isoform X2 730001124 (6)ref|XP_009759585.1|3e-72PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c
JMSF043P04Sequence712000575 (7)ref|XP_010320594.1|8e-124PREDICTED: dehydroquinate dehydratase/shikimate:NADP oxidoreductase isoform X2 483001124 (6)ref|XP_009759585.1|2e-66PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c
JMSF048N15Sequence719000575 (7)ref|XP_010320594.1|3e-122PREDICTED: dehydroquinate dehydratase/shikimate:NADP oxidoreductase isoform X2 508001124 (6)ref|XP_011071496.1|5e-71PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, c

Alignment

This contig is upended


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rJMSF025N24+                                       GGATGGCCTGCGAGGTTTATCATCTACCACC
rJMFF017J16+                                   TTGAGGATGNCCTGCGAGGTTTATCATCTACCACN
                      ____________________________________________________________
consensus                                      TTGAGGATGGCCTGCGAGGTTTATCATCTACCACC
 
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rJMSF025N24+          TAAAAAGTGAGGTCCTCAATAGATCTTAGAGTTTGATGTTTGAATTTCCAACATCTTTTC
rJMFF017J16+          TAAAAAGTGAGGTCCTCAATAGATCTTAGAGTTTGATGTTTGAATTTCCAACATCTTTTC
                      ____________________________________________________________
consensus             TAAAAAGTGAGGTCCTCAATAGATCTTAGAGTTTGATGTTTGAATTTCCAACATCTTTTC
 
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rJMSF025N24+          AGGTTTGCATCATACCCCAGTTGGCTCTTCACCCTTGGCTGGTAAATTATTTGTGGTAAT
rJMFF017J16+          AGGTTTGCATCATACCCCAGTTGGCTCTTCACCCTTGGCTGGTAAATTATTTGTGGTAAT
rJMFF039D21+                        CCCCAGTTGGCTCTTCACCCTTGGCTGGTAAATTATTTGTGGTAAT
rJMSF048N15+          AGGTTTGCATCATACCCCAGTTGGCTCTTCACCCTTGGCTGGTAAATTATTTGTGGTAAT
rJMSF043P04+                        CCCCAGTTGGCTGTTCACCCTTGNNTGGTAAATTATNTGTGGTAAT
rJMFF027A10+          AGGTTTGCATCATACCCCAGTTGGCTCTTCACCCTTGGCTGGTAAATTATTTGTGGTAAT
                      ____________________________________________________________
consensus             AGGTTTGCATCATACCCCAGTTGGCTCTTCACCCTTGGCTGGTAAATTATTTGTGGTAAT
 
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rJMSF025N24+          TGGTGCTGGTGGTGCTGGAAAGGCGCTGGCTTATGGTGCAAAAGAAAAAGGAGCTAGGGT
rJMFF017J16+          TGGTGCTGGTGGTGCTGGAAAGGCGCTGGCTTATGGTGCAAAAGAAAAAGGAGCTAGGGT
rJMFF039D21+          TGGTGCTGGTGGTGCTGGAAAGGCGCTGGCTTATGGTGCAAAAGAAAAAGGAGCTAGGGT
rJMSF048N15+          TGGTGCTGGTGGTGCTGGAAAGGCGCTGGCTTATGGTGCAAAAGAAAAAGGAGCTAGGGT
rJMSF043P04+          TGGTGCTGGTGGTGCTGGAAAGGCGCTGGCTTATGGTGCAAAAGAAAAAGGAGCTAGGGT
rJMFF027A10+          TGGTGCTGGTGGTGCTGGAAAGGCGCTGGCTTATGGTGCAAAAGAAAAAGGAGCTAGGGT
                      ____________________________________________________________
consensus             TGGTGCTGGTGGTGCTGGAAAGGCGCTGGCTTATGGTGCAAAAGAAAAAGGAGCTAGGGT
 
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rJMSF025N24+          GGTGATTGCTAACCGTACATATGGTCGAGCCAAAGAGCTGGCTGATTCAATTGGAGCACA
rJMFF017J16+          GGTGATTGCTAACCGTACATATGGTCGAGCCAAAGAGCTGGCTGATTCAATTGGAGCACA
rJMFF039D21+          GGTGATTGCTAACCGTACATATGGTCGAGCCAAAGAGCTGGCTGATTCAATTGGAGCACA
rJMSF048N15+          GGTGATTGCTAACCGTACATATGGTCGAGCCAAAGAGCTGGCTGATTCAATTGGAGCACA
rJMSF043P04+          GGTGATTGCTAACCGTACATATGGTCGAGCCAAAGAGCTGGCTGATTCAATTGGAGCACA
rJMFF027A10+          GGTGATTGCTAACCGTACATATGGTCGAGCCAAAGAGCTGGCTGATTCAATTGGAGCACA
                      ____________________________________________________________
consensus             GGTGATTGCTAACCGTACATATGGTCGAGCCAAAGAGCTGGCTGATTCAATTGGAGCACA
 
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rJMSF025N24+          GGCTTTGTCTCTTGCCGAGCTTAATAGTTTCCATCCAGAAAAAGGCATGATTCTTGCAAA
rJMFF017J16+          GGCTTTGTCTCTTGCCGAGCTTAATAGTTTCCATCCAGAAAAAGGCATGATTCTTGCAAA
rJMFF039D21+          GGCTTTGTCTCTTGCCGAGCTTAATAGTTTCCATCCAGAAAAAGGCATGATTCTTGCAAA
rJMSF048N15+          GGCTTTGTCTCTTGCCGAGCTTAATAGTTTCCATCCAGAAAAAGGCATGATTCTTGCAAA
rJMSF043P04+          GGCTTTGTCTCTTGCCGAGCTTAATAGTTTCCATCCAGAAAAAGGCATGATTCTTGCAAA
rJMFF027A10+          GGCTTTGTCTCTTGCCGAGCTTAATAGTTTCCATCCAGAAAAAGGCATGATTCTTGCAAA
                      ____________________________________________________________
consensus             GGCTTTGTCTCTTGCCGAGCTTAATAGTTTCCATCCAGAAAAAGGCATGATTCTTGCAAA
 
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rJMSF025N24+          CACCACCTCCATCGGGATGCAACCAAAAGTTGATGAGACACCAGTTGCTAAGGAAGCTTT
rJMFF017J16+          CACCACCTCCATCGGGATGCAACCAAAAGTTGATGAGACACCAGTTGCTAAGGAAGCTTT
rJMFF039D21+          CACCACCTCCATCGGGATGCAACCAAAAGTTGATGAGACACCAGTTGCTAAGGAAGCTTT
rJMSF048N15+          CACCACCTCCATCGGGATGCAACCAAAAGTTGATGAGACACCAGTTGCTAAGGAAGCTTT
rJMSF043P04+          CACCACCTCCATCGGGATGCAACCAAAAGTTGATGAGACACCAGTTGCTAAGGAAGCTTT
rJMFF027A10+          CACCACCTCCATCGGGATGCAACCAAAAGTTGATGAGACACCAGTTGCTAAGGAAGCTTT
                      ____________________________________________________________
consensus             CACCACCTCCATCGGGATGCAACCAAAAGTTGATGAGACACCAGTTGCTAAGGAAGCTTT
 
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rJMSF025N24+          GCAATACTATTCCCTTGTCTTCGATGCCGTCTATACCCCAAAGATAACTAGATTGTTGAG
rJMFF017J16+          GCAATACTATTCCCTTGTCTTCGATGCCGTCTATACCCCAAAGATAACTAGATTGTTGAG
rJMFF039D21+          GCAATACTATTCCCTTGTCTTCGATGCCGTCTATACCCCAAAGATAACTAGATTGTTGAG
rJMSF048N15+          GCAATACTATTCCCTTGTCTTCGATGCCGTCTATACCCCAAAGATAACTAGATTGTTGAG
rJMSF043P04+          GCAATACTATTCCCTTGTCTTCGATGCCGTCTATACCCCAAAGATAACTAGATTGTTGAG
rJMFF027A10+          GCAATACTATTCCCTTGTCTTCGATGCCGTCTATACCCCAAAGATAACTAGATTGTTGAG
                      ____________________________________________________________
consensus             GCAATACTATTCCCTTGTCTTCGATGCCGTCTATACCCCAAAGATAACTAGATTGTTGAG
 
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rJMSF025N24+          AGAGGCCGAAGAATGTGGATCGAAAATTGTTACTGGAGTAGAAATGTTCATTGGGCAAGC
rJMFF017J16+          AGAGGCCGAAGAATGTGGATCGAAAATTGTTACTGGAGTAGAAATGTTCATTGGGCAAGC
rJMFF039D21+          AGAGGCCGAAGAATGTGGATCGAAAATTGTTACTGGAGTAGAAATGTTCATTGGGCAAGC
rJMSF048N15+          AGAGGCCGAAGAATGTGGATCGAAAATTGTTACTGGAGTAGAAATGTTCATTGGGCAAGC
rJMSF043P04+          AGAGGCCGAAGAATGTGGATCGAAAATTGTTACTGGAGTAGAAATGTTCATTGGGCAAGC
rJMFF027A10+          AGAGGCCGAAGAATGTGGATCGAAAATTGTTACTGGAGTAGAAATGTTCATTGGGCAAGC
                      ____________________________________________________________
consensus             AGAGGCCGAAGAATGTGGATCGAAAATTGTTACTGGAGTAGAAATGTTCATTGGGCAAGC
 
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rJMSF025N24+          ATATGAACAATATGAAAGGTTCACAGGATTGCCTGCTCCAAAGGAACTATTTAAAAGTAT
rJMFF017J16+          ATATGAACAATATGAAAGGTTCACAGGATTGCCTGCTCCAAAGGAACTATTTAAAAGTAT
rJMFF039D21+          ATATGAACAATATGAAAGGTTCACAGGATTGCCTGCTCCAAAGGAACTATTTAAAAGTAT
rJMSF048N15+          ATATGAACAATATGAAAGGTTCACAGGATTGCCTGCTCCAAAGGAACTATTTNAAAGTAT
rJMSF043P04+          ATATGAACAATATGAAAGGTTCACAGGATTGCCTGCTCCAAAGGAA              
rJMFF027A10+          ATATGAACAATATGAAAGGTTCACAGGATTGCCTGCTCCAAAGGAACTATTTAAAAGTAT
                      ____________________________________________________________
consensus             ATATGAACAATATGAAAGGTTCACAGGATTGCCTGCTCCAAAGGAACTATTTAAAAGTAT
 
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rJMSF025N24+          CATGGCAGCATATTGAAAGCAAGCGTTTGCCGGCTTCACTACCATGTCCTCACTAATCCC
rJMFF017J16+          CATGGCAGCATATTGAAAGCAAGCGTTTGCCGGCTTCACTACCATGTCCTCACTAATCCC
rJMFF039D21+          CATGGCAGCATATTGAAAGCAAGCGTTTGCCGGCTTCACTACCATGTCCTCACTAATCCC
rJMSF048N15+          CACGGCAGCAT                                                 
rJMFF027A10+          CATGGCAGCATATTGAAAGCAAGCGTTTGCCGGCTTCACTACCATGTCCTCACTAATCCC
                      ____________________________________________________________
consensus             CATGGCAGCATATTGAAAGCAAGCGTTTGCCGGCTTCACTACCATGTCCTCACTAATCCC
 
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rJMSF025N24+          ATTTATTTTTGTATTCCTTGATAATCATGCTATGTTCTTAGTCTATATTTTCTAGTGTCG
rJMFF017J16+          ATTTATTTTTGTATTCCTTGATAATCATGCTATGTTCTTAGTCTATATTTTCTAGTGTCG
rJMFF039D21+          ATTTATTTTTGTATTCCTTGATAATCATGCTATGTTCTTAGTCTATATTTTCTAGTGTCG
rJMFF027A10+          ATTTATTTTTGTATTCCTTGATAATCATGCTATGTTCTTAGTCTATATTTTCTAGTGTCG
                      ____________________________________________________________
consensus             ATTTATTTTTGTATTCCTTGATAATCATGCTATGTTCTTAGTCTATATTTTCTAGTGTCG
 
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rJMSF025N24+          CGTCACTTGTACCCCAC                                           
rJMFF017J16+          CGTCACTTGTACCCCACATGTAAACTGTTCGCGTCTGTTAGGACATGTCTTATGAAAC  
rJMFF039D21+          CGTCACTTGTACCCCACATGTAAACTGTTTGCGTCTGTTAGGACAT              
rJMFF027A10+          CGTCACTTGTACCCCACATGTAAACTGTTTGCGTCTGTTAGGACATGTCTTATGAAACTT
                      ____________________________________________________________
consensus             CGTCACTTGTACCCCACATGTAAACTGTTTGCGTCTGTTAGGACATGTCTTATGAAACTT