Contig 001122:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038O13+                       CCAAGAGATGTTATATGACTCCAGAAGACGACGATTCAGCTAAATCT
                      ____________________________________________________________
consensus                          CCAAGAGATGTTATATGACTCCAGAAGACGACGATTCAGCTAAATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038O13+          CCAAACAAACTAGTTAGGCGCCCTTCCAGGGCGGTCAGGCAGATCTTTGACACTCCAGTG
rJMFF026G15+                                             CAGGCAGATCTTTGACACTCCAGTG
                      ____________________________________________________________
consensus             CCAAACAAACTAGTTAGGCGCCCTTCCAGGGCGGTCAGGCAGATCTTTGACACTCCAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038O13+          AAGAACGAAGGTAGTGAGACCGAAAGACTTTCAGCTCGTGATGATGTATATGATCTCCCC
rJMFF026G15+          AAGAACGAAGGTAGTGAGACCGAAAGACTTTCAGCTCGTGATGATGTATATGATCTCCCC
                      ____________________________________________________________
consensus             AAGAACGAAGGTAGTGAGACCGAAAGACTTTCAGCTCGTGATGATGTATATGATCTCCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038O13+          GAGGATCTCCTGGAATCAATAAGAGAAAAGGAAAGGAAAGCGCTCGAGGAAAAAGATCCC
rJMFF026G15+          GAGGATCTCCTGGAATCAATAAGAGAAAAGGAAAGGAAAGCGCTCGAGGAAAAAGATCCC
                      ____________________________________________________________
consensus             GAGGATCTCCTGGAATCAATAAGAGAAAAGGAAAGGAAAGCGCTCGAGGAAAAAGATCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038O13+          GCCATCTCACAAGCAAAATGGAGGAAACAAATGCTTGCAGGGCTACCGAAACTGTTTGAC
rJMFF026G15+          GCCATCTCACAAGCAAAATGGAGGAAACAAATGCTTGCAGGGCTACCGAAACTGTTTGAC
                      ____________________________________________________________
consensus             GCCATCTCACAAGCAAAATGGAGGAAACAAATGCTTGCAGGGCTACCGAAACTGTTTGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038O13+          ACAATTTATTTCCTGTTTCAATCGATCAGACGCTCTGTCATCACCAAGGAGGAATTTATG
rJMFF026G15+          ACAATTTATTTCCTGTTTCAATCGATCAGACGCTCTGTCATCACCAAGGAGGAATTTATG
                      ____________________________________________________________
consensus             ACAATTTATTTCCTGTTTCAATCGATCAGACGCTCTGTCATCACCAAGGAGGAATTTATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038O13+          CACAAGATCGTTTCAAGCCACCTAGGAACTGTTGATACTAGAGAAATCGAAGAGCAACTC
rJMFF026G15+          CACAAGATCGTTTCAAGCCACCTAGGAACTGTTGATACTAGAGAAATCGAAGAGCAACTC
                      ____________________________________________________________
consensus             CACAAGATCGTTTCAAGCCACCTAGGAACTGTTGATACTAGAGAAATCGAAGAGCAACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038O13+          AGATTACTGCATGAACTAGCGCCAGAATGGATCCATGAAAAGCCAGCATCAAGTGGCGAT
rJMFF026G15+          AGATTACTGCATGAACTAGCGCCAGAATGGATCCATGAAAAGCCAGCATCAAGTGGCGAT
                      ____________________________________________________________
consensus             AGATTACTGCATGAACTAGCGCCAGAATGGATCCATGAAAAGCCAGCATCAAGTGGCGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038O13+          CTCCTCATATGTGTTAACAAGATCCCGGGCCCTGAATCAATACGCTTGAGACTTGCAGAT
rJMFF026G15+          CTCCTCATATGTGTTAACAAGATCCCGGGCCCTGAATCAATACGCTTGAGACTTGCAGAT
                      ____________________________________________________________
consensus             CTCCTCATATGTGTTAACAAGATCCCGGGCCCTGAATCAATACGCTTGAGACTTGCAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038O13+          GCAAAGTGAAATCGGGGAGGATGAAGTAACAGTTGTAGATAATCTTGTTTGAGGCTTATT
rJMFF026G15+          GCAAAGTGAAATCGGGGAGGGTGAAGTAACAGTTGTAGATAATCTTGTTTGAGGCTTATT
                      ____________________________________________________________
consensus             GCAAAGTGAAATCGGGGAGGGTGAAGTAACAGTTGTAGATAATCTTGTTTGAGGCTTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038O13+          AAATGGGGCTACCATGGAAGAAGAAGAAGAAGAAGAAGAATGCAGCCTTGATGGCTTGCT
rJMFF026G15+          AAATGGGGCTACCATGGAAGAAGAAGAAGAAGAAGAAGAATGCAGCCTTGATGGCTTGCT
                      ____________________________________________________________
consensus             AAATGGGGCTACCATGGAAGAAGAAGAAGAAGAAGAAGAATGCAGCCTTGATGGCTTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038O13+          AACTTAAATTTTACTTTTTGTTTCAATATTTATTGTAGTGGTAAGCTTATTGTGAAGTTG
rJMFF026G15+          AACTTAAATTTTACTTTTTGTTTCAATATTTATTGTAGTGGTAAGCTTATTGTCAAGTTG
                      ____________________________________________________________
consensus             AACTTAAATTTTACTTTTTGTTTCAATATTTATTGTAGTGGTAAGCTTATTGTGAAGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038O13+          ATAGTAGATCAAGGTTAACTTTGTTGTAAGTAATTACTTGCCAGCTTTTGTAATTTTGAA
rJMFF026G15+          ATAGTAGATCAAGGTTAACTTTGTTGTAAGTAATTACTTGCCAGCTTTTGTAATTTTGAA
                      ____________________________________________________________
consensus             ATAGTAGATCAAGGTTAACTTTGTTGTAAGTAATTACTTGCCAGCTTTTGTAATTTTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF038O13+          GTTTTTACCCATTTGGGACAATGGGTACCAAATTTGCAAGT                   
rJMFF026G15+          GTTTTTACCCATTTGGGACAATGGGTACCAAATTTGCAAGTTGCAACATTCTCAAAANAA
                      ____________________________________________________________
consensus             GTTTTTACCCATTTGGGACAATGGGTACCAAATTTGCAAGTTGCAACATTCTCAAAANAA