Contig 001117:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025C22Sequence123001117 (6)608001117 (6)gb|KDP43450.1|1e-59hypothetical protein JCGZ_16737 [Jatropha curcas]
JMFF039L18Sequence562001117 (6)gb|KDP43450.1|6e-60hypothetical protein JCGZ_16737 [Jatropha curcas]608001117 (6)gb|KDP43450.1|1e-59hypothetical protein JCGZ_16737 [Jatropha curcas]
JMSF021E23Sequence630001117 (6)gb|KDP43450.1|2e-57hypothetical protein JCGZ_16737 [Jatropha curcas]600001117 (6)gb|KDP43450.1|2e-59hypothetical protein JCGZ_16737 [Jatropha curcas]

Alignment

This contig is upended


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rJMFF039L18-                                                                   AGT
rJMSF021E23-                                                                   AGT
rJMFF025C22-                                                              ACTATAGT
                      ____________________________________________________________
consensus                                                                 ACTATAGT
 
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rJMFF039L18-          GTCTGTTCTTCAATACAAGGAGCATCCTATATTCCTTGATGAAAGCAGTTATCTAATGCA
rJMSF021E23-          GTCTGTTCTTCAATACAAGGAGCATCCTATATTCCTTGATGAAAGCAGTTATCTAATGCA
JMFF039L18+                                                 ATGAAAGCAGTTATCTAATGCA
rJMFF025C22-          GTCTGTTCTTCAATACAAGGAGCATCCTATATTCCTTGATGAAAGCAGTTATCTAATGCA
                      ____________________________________________________________
consensus             GTCTGTTCTTCAATACAAGGAGCATCCTATATTCCTTGATGAAAGCAGTTATCTAATGCA
 
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rJMFF039L18-          AAAGACTACCACACCGGGCGGAATATACATAGTTCTTAAGGACACTGCAAAAACACGAAG
JMSF021E23+                                        TAGTTCTTAAGGACACTGCAAAAACACGAAG
rJMSF021E23-          AAAGACTACCACACCGGGCGGAATATACATAGTTCTTAAGGACACTGCAAAAACACGAAG
JMFF039L18+           AAAGACTACCACACCGGGCGGAATATACATAGTTCTTAAGGACACTGCAAAAACACGAAG
rJMFF025C22-          AAAGACTACCACACCGGGCGGAATATACATAGTTCTTAAGGACACTGCAAAAACACGAAG
                      ____________________________________________________________
consensus             AAAGACTACCACACCGGGCGGAATATACATAGTTCTTAAGGACACTGCAAAAACACGAAG
 
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rJMFF039L18-          CACAAACTGTTTTACAAACAGATGCGACATTCCTGGCGGCCCTATGCTCCATCTGGCTGG
JMSF021E23+           CACAAACTGTTTTACAAACAGATGCGACATTCCTGGCGGCCCTATGCTCCATCTGGCTGG
rJMSF021E23-          CACAAACTGTTTTACAAACAGATGCGACATTCCTGGCGGCCCTATGCTCCATCTGGCTGG
JMFF039L18+           CACAAACTGTTTTACAAACAGATGCGACATTCCTGGCGGCCCTATGCTCCATCTGGCTGG
rJMFF025C22-          CACAAACTGTTTTACAAACAGATGCGACATTCCTGGCGGCCCTATGCTCCATCTGGCTGG
                      ____________________________________________________________
consensus             CACAAACTGTTTTACAAACAGATGCGACATTCCTGGCGGCCCTATGCTCCATCTGGCTGG
 
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rJMFF039L18-          AGAAAAGGATTGGCAATCTCATCTGTGCCGTCAGTTGGCGCCACAAGCATAACTGCAGTC
JMSF021E23+           AGAAAAGGATTGGCAATNTCATCTGTGCCGTCAGTNGGCGCCACAAGCATAACTGCAGTC
rJMSF021E23-          AGAAAAGGATTGGCAATCTCATCTGTGCCGTCAGTTGGCGCCACAAGCATAACTGCAGTC
JMFF039L18+           AGAAAAGGATTGGCAATCTCATCTGTGCCGTCAGTTGGCGCCACAAGCATAACTGCAGTC
rJMFF025C22-          AGAAAAGGATTGGCAATCTCATCTGTGCCGTCAGTTGGCGCCACAAGCATAACTGCAGTC
                      ____________________________________________________________
consensus             AGAAAAGGATTGGCAATCTCATCTGTGCCGTCAGTTGGCGCCACAAGCATAACTGCAGTC
 
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rJMFF039L18-          CCCCTACAGACAATTAATCCAAGACGCCGTGTCTGATCTGTTGTCTTCAGGGGATCATCG
JMSF021E23+           CCCCTACAGACAATTAATCCAAGACGCCGNGTNTGATCTGTTGTCTTCAGAGGATCATCG
rJMSF021E23-          CCCCTACAGACAATTAATCCAAGACGCCGTGTCTGATCTGTTGTCTTCAGAGGATCATCG
JMFF039L18+           CCCCTACAGACAATTAATCCAAGACGCCGTGTCTGATCTGTTGTCTTCAGGGGATCATCG
rJMFF025C22-          CCCCTACAGACAATTAATCCAAGACGCCGTGTCTGATCTGTTGTCTTCAGGGGATCATCG
                      ____________________________________________________________
consensus             CCCCTACAGACAATTAATCCAAGACGCCGTGTCTGATCTGTTGTCTTCAGGGGATCATCG
 
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rJMFF039L18-          GAATCTCTAAGATACTCAATGGCTTCATCCAAGACAAGATTCAGCAATTGGTCATAGCCT
JMSF021E23+           GAATCTCTAAGATACTCAATGGCTTCATCCAAGACAAGATTCAGCAATTGGTCATAGCCT
rJMSF021E23-          GAATCTCTAAGATACTCAATGGCTTCATCCAAGACAAGATTCAGCAATTGGTCATAGCCT
JMFF039L18+           GAATCTCTAAGATACTCAATGGCTTCATCCAAGACAAGATTCAGCAATTGGTCATAGCCT
rJMFF025C22-          GAATCTCTAAGATACTCAATGGCTTCATCCAAGACAAGATTCAGCAATTGGTCATAGCCT
                      ____________________________________________________________
consensus             GAATCTCTAAGATACTCAATGGCTTCATCCAAGACAAGATTCAGCAATTGGTCATAGCCT
 
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rJMFF039L18-          TTTAGTGTTCCCACAACTTGTCTGCCACCAGTAAGCTTTACTTGCACACCCTTGTCAACG
JMSF021E23+           TTTAGTGTTCCCACAACTTGTCTGCCACCAGTAAGCTTTACTTGCACACCCTTGTCAACG
rJMSF021E23-          TTTAGTGTTCCCACAACTTGTCTGCCACCAGTAAGCTTTACTTGCACACCCTTGTCAACG
JMFF039L18+           TTTAGTGTTCCCACAACTTGTCTGCCACCAGTAAGCTTTACTTGCACACCCTTGTCAACG
rJMFF025C22-          TTTAGTGTTCCCACAACTTGTCTGCCACCAGTAAGCTTTACTTGCACACCCTTGTCAACG
                      ____________________________________________________________
consensus             TTTAGTGTTCCCACAACTTGTCTGCCACCAGTAAGCTTTACTTGCACACCCTTGTCAACG
 
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rJMFF039L18-          AACTTTGCCAAATCTAGAACTGTTTCTTTCCTACCTGACATTCTAATCTTTATTCGATCG
JMSF021E23+           AACTTTGCCAAATCTAGAACTGTTTCTTTCCTACCTGACATTCTAATCTTTATTCGATCG
rJMSF021E23-          AACTTTGCCAAATCTAGAACTGTTTCTTTCCTACCTGACATTCTAATCTTTATTCGATCG
JMFF039L18+           AACTTTGCCAAATCTAGAACTGTTTCTTTCCTACCTGACATTCTAATCTTTATTCGATCG
JMFF025C22+                                                                    TCG
rJMFF025C22-          AACTTTGCCAAATCTAGAACTGTTTCTTTCCTACCTGACATTCTAATCTTTATTCGATCG
                      ____________________________________________________________
consensus             AACTTTGCCAAATCTAGAACTGTTTCTTTCCTACCTGACATTCTAATCTTTATTCGATCG
 
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rJMFF039L18-          TACACAAATTCGTTGCAATACTCCCCAGTTAAACAGCAAAACAACACCCTTTCGGAGCTC
JMSF021E23+           TACACAAATT--TTGCAATACTCCCCAGTTAAACAGCAAAACAACACCCTTTCGGAGCTC
rJMSF021E23-          TACACAAATT--TTGCAATACTCCCCAGTTAAACAGCAAAACAACACCCTTTCGGAGCTC
JMFF039L18+           TACACAAATTCGTTGCAATACTCCCCAGTTAAACAGCAAAACAACACCCTTTCGGAGCTC
JMFF025C22+           TACACAAATTCGTTGCAATACTCCCCAGTTAAACAGCAAAACAACACCCTTTCGGAGCTC
rJMFF025C22-          TACACAAATTCGTTGCAATACTCCCCAGTTAAACAGCAAAACAACACCCTTTCGGAGCTC
                      ____________________________________________________________
consensus             TACACAAATTCGTTGCAATACTCCCCAGTTAAACAGCAAAACAACACCCTTTCGGAGCTC
 
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rJMFF039L18-          AAAAGCTGTGCCCTAACTTCTCTTCCCCTTCTCTCTCTCTTCTTTCCCGCTAAGTCTTGC
JMSF021E23+           AAAAGCTGTGCCCTAACTTCTCTTCCCCTTCTCTCTCTCTTCTTTCCCGCTAAGTCTT  
rJMSF021E23-          AAAAGCTGTGCCCTAACTTCTCTTCCCCTTCTCTCTCTCTTCTTTCCCGCTAAGTCTT  
JMFF039L18+           AAAAGCTGTGCCCTAACTTCTCTTCCCCTTCTCTCTCTCTTCTTTCCCGCTAAGTCTTGC
JMFF025C22+           AAAAGCTGTGCCCTAACTTCTCTTCCCCTTCTCTCTCTCTTCTTTCCCGCTAAGTCTTGC
rJMFF025C22-          AAAAGCTGTGCCCTAACTTCTCTTCCCCTTCTCTCTCTCTTCTTTCCCGCTAAGTCTTGC
                      ____________________________________________________________
consensus             AAAAGCTGTGCCCTAACTTCTCTTCCCCTTCTCTCTCTCTTCTTTCCCGCTAAGTCTTGC