Contig 001113:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019D11+                                                            ATGGATGGGC
                      ____________________________________________________________
consensus                                                               ATGGATGGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019D11+          TTCTTCNTGCCACGGCTAGCACCAAGGGCACTTTGATAAGAATTTTCAATACAATGGATG
rJMFF023P05+                            GCACCAAGGGCACTTTGATAAGAATTTTCAATACAATGGATG
                      ____________________________________________________________
consensus             TTCTTCNTGCCACGGCTAGCACCAAGGGCACTTTGATAAGAATTTTCAATACAATGGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019D11+          GGACTCAGTTGCAAGAGGTACGCAGAGGTGTAGACAAAGCCGATATCTACAGTATAGCAC
rJMFF023P05+          GGACTCAGTTGCAAGAGGTACGCAGAGGTGTAGACAAAGCCGATATCTACAGTATAGCAC
                      ____________________________________________________________
consensus             GGACTCAGTTGCAAGAGGTACGCAGAGGTGTAGACAAAGCCGATATCTACAGTATAGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019D11+          TGTCACCAAATGTTCAGTGGTTGTCGGTTTCTAGTGACAAAGGTACTATTCATGTATACA
rJMFF023P05+          TGTCACCAAATGTTCAGTGGTTGTCGGTTTCTAGTGACAAAGGTACTATTCATGTATACA
                      ____________________________________________________________
consensus             TGTCACCAAATGTTCAGTGGTTGTCGGTTTCTAGTGACAAAGGTACTATTCATGTATACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019D11+          GCCTAAGAGTGCGAATTGTTGGGGAGGATGTTGCAACTGATAGCAGCACTGTTGGAAATC
rJMFF023P05+          GCCTAAGAGTGCGAATTGTTGGGGAGGATGTTGCAACTGATAGCAGCACTGTTGGAAATC
                      ____________________________________________________________
consensus             GCCTAAGAGTGCGAATTGTTGGGGAGGATGTTGCAACTGATAGCAGCACTGTTGGAAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019D11+          AAGCGCTGTTGTATCAACAGCATTCATCAACTGCACTTGATGCTCTTATTTCTCCGAGCA
rJMFF023P05+          AAGCGCTGTTGTATCAACAGCATTCATCAACTGCACTTGATGCTCTTATTTCTCCGAGCA
                      ____________________________________________________________
consensus             AAGCGCTGTTGTATCAACAGCATTCATCAACTGCACTTGATGCTCTTATTTCTCCGAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019D11+          CCGGTGCCAACCCTGGCTCATCATTGTCTTTCATGAGAGGGGTTTTACCAAGGTATTTTA
rJMFF023P05+          CCGGTGCCAACCCTGGCTCATCATTGTCTTTCATGAGAGGGGTTTTACCAAGGTATTTTA
                      ____________________________________________________________
consensus             CCGGTGCCAACCCTGGCTCATCATTGTCTTTCATGAGAGGGGTTTTACCAAGGTATTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019D11+          GCTCGGAGTGGTCATTTGCTCAGTTTCACTTGCCAGAGTGTACCCAATTCATCTCTGCAT
rJMFF023P05+          GCTCGGAGTGGTCATTTGCTCAGTTTCACTTGCCAGAGTGTACCCAATTCATCTCTGCAT
                      ____________________________________________________________
consensus             GCTCGGAGTGGTCATTTGCTCAGTTTCACTTGCCAGAGTGTACCCAATTCATCTCTGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019D11+          TTGGTTCTCAGAACACTGTTATTATCGCTGGCATGGACGGGAGTTTCTACAGGTGTAGCT
rJMFF023P05+          TTGGTTCTCAGAACACTGTTATTATCGCTGGCATGGACGGGAGTTTCTACAGGTGTAGCT
                      ____________________________________________________________
consensus             TTGGTTCTCAGAACACTGTTATTATCGCTGGCATGGACGGGAGTTTCTACAGGTGTAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019D11+          TTGACCCTGTGAATGGAGGGGCTATGGTGCAGCAAGAATATGTTTGCTTTCTGAAAACAG
rJMFF023P05+          TTGACCCTGTGAATGGAGGGGCTATGGTGCAGCAAGAATATGTTTGCTTTCTGAAAACAG
                      ____________________________________________________________
consensus             TTGACCCTGTGAATGGAGGGGCTATGGTGCAGCAAGAATATGTTTGCTTTCTGAAAACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019D11+          AGAGTAGACCTAGATAGTGCCCAACTTCAGTCATATGGAAATATGCTTATCATATCCTTC
rJMFF023P05+          AGAGTAGACCTAGATAGTGCCCAACTTCAGTCATATGGAAATATGCTTATCATATCCTTC
                      ____________________________________________________________
consensus             AGAGTAGACCTAGATAGTGCCCAACTTCAGTCATATGGAAATATGCTTATCATATCCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019D11+          CTCTGTATATACATCATTGCCTATTACTTTGGATGTAGAAAAAGGAAAAAAGGTCAGATG
rJMFF023P05+          CTCTGTATATACATCATTGCCTATTACTTTGGATGTAGAAAAAGGAAAAAAGGTCAGATG
                      ____________________________________________________________
consensus             CTCTGTATATACATCATTGCCTATTACTTTGGATGTAGAAAAAGGAAAAAAGGTCAGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019D11+          TTATTGGCTGCTGATATATACTTTAATAAGTGTACATAATTCTTTCAGTTTTTCAAAGAT
rJMFF023P05+          TTATTGGCTGCTGATATATACTTTAATAAGTGTACATAATTCTTTCAGTTTTTCAAAGAT
                      ____________________________________________________________
consensus             TTATTGGCTGCTGATATATACTTTAATAAGTGTACATAATTCTTTCAGTTTTTCAAAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF019D11+          CCAAAGTGTGTAGTAGGTGTGAGACTCTCTCTATAAGAAATCTGAAATAT          
rJMFF023P05+          CCAAAGTGTGTAGTAGGTGTGAGACTCTCTCTATAAGAAATCTGAAATATCGATCCTCTT
                      ____________________________________________________________
consensus             CCAAAGTGTGTAGTAGGTGTGAGACTCTCTCTATAAGAAATCTGAAATATCGATCCTCTT