Contig 001110:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF042E06+                                                                    AA
                      ____________________________________________________________
consensus                                                                       AA
 
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rJMSF042E06+          CATCTGGACTCACTGCATCAATTGCTTTAGAAAAGGTTGCTCAAATGGAATCGGGAAAGG
                      ____________________________________________________________
consensus             CATCTGGACTCACTGCATCAATTGCTTTAGAAAAGGTTGCTCAAATGGAATCGGGAAAGG
 
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rJMSF042E06+          TGGTTCTTGTGACTGCTGCTGCTGGAGGGACAGGGCAGTTTGCTGTGCAGCTTGCAAAAT
rJMFF023D07+                                                   GCTGTGCAGCTTGCAAAAT
                      ____________________________________________________________
consensus             TGGTTCTTGTGACTGCTGCTGCTGGAGGGACAGGGCAGTTTGCTGTGCAGCTTGCAAAAT
 
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rJMSF042E06+          TAGCTGGAAATACAGTAGTTGCAACTTGTGGAGGTAATGAAAAGGCCAATCTTCTGAGAG
rJMFF023D07+          TAGCTGGAAATACAGTAGTTGCAACTTGTGGAGGTAATGAAAAGGCCAATCTTCTGAGAG
                      ____________________________________________________________
consensus             TAGCTGGAAATACAGTAGTTGCAACTTGTGGAGGTAATGAAAAGGCCAATCTTCTGAGAG
 
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rJMSF042E06+          ACTTGGGAGTTGACCGAGTAATTGACTACAAAAAAGAAGATATAAAATCTGTTCTGAAGG
rJMFF023D07+          ACTTGGGAGTTGACCGAGTAATTGACTACAAAAAAGAAGATATAAAATCTGTTCTGAAGG
                      ____________________________________________________________
consensus             ACTTGGGAGTTGACCGAGTAATTGACTACAAAAAAGAAGATATAAAATCTGTTCTGAAGG
 
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rJMSF042E06+          AGGAGTTTCCAAAAGGTGTTGATATTGTCTATGAGTCTGTTGGTGGTAAAATGTTCAACT
rJMFF023D07+          AGGAGTTTCCAAAAGGTGTTGATATTGTCTATGAGTCTGTTGGTGGTAAAATGTTCAACT
                      ____________________________________________________________
consensus             AGGAGTTTCCAAAAGGTGTTGATATTGTCTATGAGTCTGTTGGTGGTAAAATGTTCAACT
 
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rJMSF042E06+          TATGCATGAATGCATTGGCACGCTATGGGCGACTTGTTGTCATTGGAATGATTTCTCAGT
rJMFF023D07+          TATGCATGAATGCATTGGCACGCTATGGGCGACTTGTTGTCATTGGAATGATTTCTCAGT
                      ____________________________________________________________
consensus             TATGCATGAATGCATTGGCACGCTATGGGCGACTTGTTGTCATTGGAATGATTTCTCAGT
 
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rJMSF042E06+          ATCAAGGAGAACATGGATGGAAACCACAAAATTACCCAGGATTGTGTGAAAAGATTCTAG
rJMFF023D07+          ATCAAGGAGAACATGGATGGAAACCACAAAATTACCCAGGATTGTGTGAAAAGATTCTAG
                      ____________________________________________________________
consensus             ATCAAGGAGAACATGGATGGAAACCACAAAATTACCCAGGATTGTGTGAAAAGATTCTAG
 
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rJMSF042E06+          CTAAAAGTCAAACTGTGAGTGGGTTTTTCCTGATACATTATGCTCATCTGTGGGAAGAGC
rJMFF023D07+          CTAAAAGTCAAACTGTGAGTGGGTTTTTCCTGATACATTATGCTCATCTGTGGGAAGAGC
                      ____________________________________________________________
consensus             CTAAAAGTCAAACTGTGAGTGGGTTTTTCCTGATACATTATGCTCATCTGTGGGAAGAGC
 
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rJMSF042E06+          ATTTGAGCAGGTTGATTGATCTTTTTTCCTCTGGAAAGCTGAAAGTTGCCATAGACCCAA
rJMFF023D07+          ATTTGAGCAGGTTGATTGATCTTTTTTCCTCTGGAAAGCTGAAAGTTGCCATAGACCCAA
                      ____________________________________________________________
consensus             ATTTGAGCAGGTTGATTGATCTTTTTTCCTCTGGAAAGCTGAAAGTTGCCATAGACCCAA
 
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rJMSF042E06+          AAAGATTTTTAGGCGTTCATTCTGTTGCTGATGCTGTTGAGTATCTTTATTCTGGTAAAA
rJMFF023D07+          AAAGATTTTTAGGCGTTCATTCTGTTGCTGATGCTGTTGAGTATCTTTATTCTGGTAAAA
                      ____________________________________________________________
consensus             AAAGATTTTTAGGCGTTCATTCTGTTGCTGATGCTGTTGAGTATCTTTATTCTGGTAAAA
 
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rJMSF042E06+          GCACTGGCAAGGTTGTGGTTTGCATAGATCCTGCTTTCAACCAACAAGTTTCGAAGCTGT
rJMFF023D07+          GCACTGGCAAGGTTGTGGTTTGCATAGATCCTGCTTTCAACCAACAAGTTTCGAAGCTGT
                      ____________________________________________________________
consensus             GCACTGGCAAGGTTGTGGTTTGCATAGATCCTGCTTTCAACCAACAAGTTTCGAAGCTGT
 
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rJMSF042E06+          AACGCAAATCACAGATCAGTGCAACTGCCCACATTCTCTTTGCTCTACTTTATTTTATCA
rJMFF023D07+          AACGCAAATCACAGATCAGTGCAACTGCCCACATTCTCTTTGCTCTACTTTATTTTATCA
                      ____________________________________________________________
consensus             AACGCAAATCACAGATCAGTGCAACTGCCCACATTCTCTTTGCTCTACTTTATTTTATCA
 
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rJMSF042E06+          TTCAAATATAAAATAATTGTAATGTT                                  
rJMFF023D07+          TTCAAATATAAAATAATTGTAATGTTTGTCGTAAATCATATTAAATAATAAAACATTTGG
                      ____________________________________________________________
consensus             TTCAAATATAAAATAATTGTAATGTTTGTCGTAAATCATATTAAATAATAAAACATTTGG
 
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rJMFF023D07+          TGCAGAAAATACTTCTTTTTTTAGTATATGAGAACGGGTTTGACTGTATATACAATATAT
                      ____________________________________________________________
consensus             TGCAGAAAATACTTCTTTTTTTAGTATATGAGAACGGGTTTGACTGTATATACAATATAT