Contig 001109:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022P20Sequence544003700 (4)ref|NP_001234279.1|6e-29anti-PCD protein-like [Solanum lycopersicum] gb|ABA41597.1| putative anti-PCD pr767001109 (3)ref|XP_011022240.1|3e-58PREDICTED: thiol-disulfide oxidoreductase LTO1 isoform X2 [Populus euphratica]
JMFF038M04Sequence612003700 (4)ref|NP_001234279.1|1e-28anti-PCD protein-like [Solanum lycopersicum] gb|ABA41597.1| putative anti-PCD pr766001109 (3)ref|XP_011022240.1|3e-58PREDICTED: thiol-disulfide oxidoreductase LTO1 isoform X2 [Populus euphratica]
JMSF019E02Sequence313003700 (4)ref|XP_006340794.1|57.8PREDICTED: uncharacterized protein LOC102581146 [Solanum tuberosum]742001109 (3)ref|XP_011022240.1|1e-79PREDICTED: thiol-disulfide oxidoreductase LTO1 isoform X2 [Populus euphratica]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF019E02+ A
                      ____________________________________________________________
consensus A
 
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rJMSF019E02+ AGAGGCTAGCGGGCGATTTGTTTTACCTGGCACAACTACTTCTATGGCTGCTGCGAGTGC
                      ____________________________________________________________
consensus AGAGGCTAGCGGGCGATTTGTTTTACCTGGCACAACTACTTCTATGGCTGCTGCGAGTGC
 
. : . : . : . : . : . :
rJMSF019E02+ ATACTTTTTGTACATCCTAAGTACGAGATTCCCCGGGGAGTGGTGTTTATATTGTTTAAT
                      ____________________________________________________________
consensus ATACTTTTTGTACATCCTAAGTACGAGATTCCCCGGGGAGTGGTGTTTATATTGTTTAAT
 
. : . : . : . : . : . :
rJMSF019E02+ ATCTGCTGTCTTATCCTTCAGTTTGTTCTTCACTACTGTAAAGGGTTTGGGATTAGAGGA
rJMFF038M04+ CCTTCAGTTNGTTCTTCACTACTGTAAAGGGTTTGGGATTAGAGGA
rJMFF022P20+ CCTTCAGTTNGTTCTTCACTACTGTAAAGGGTTTGGGATTAGAGGA
                      ____________________________________________________________
consensus ATCTGCTGTCTTATCCTTCAGTTTGTTCTTCACTACTGTAAAGGGTTTGGGATTAGAGGA
 
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rJMSF019E02+ GGTAAAAAAAGAACTGGTTTTACAGCTATCTGTAGTGCTCTTGGTGGTTGCTGCCTTAAC
rJMFF038M04+ GGTAAAAAAAGAACTGGTTTTACAGCTATCTGTAGTGCTCTTGGTGGTTGCTGCCTTAAC
rJMFF022P20+ GGTAAAAAAAGAACTGGTTTTACAGCTATCTGTAGTGCTCTTGGTGGTTGCTGCCTTAAC
                      ____________________________________________________________
consensus GGTAAAAAAAGAACTGGTTTTACAGCTATCTGTAGTGCTCTTGGTGGTTGCTGCCTTAAC
 
. : . : . : . : . : . :
rJMSF019E02+ CAATTCATATAATGCTTCTCAGCCCACAAGTTCTGAGGTGACTGAGCTGCCATACTTTGC
rJMFF038M04+ CAATTCATATAATGCTTCTCAGCCCACAAGTTCTGAGGTGACTGAGCTGCCATACTTTGC
rJMFF022P20+ CAATTCATATAATGCTTCTCAGCCCACAAGTTCTGAGGTGACTGAGCTGCCATACTTTGC
                      ____________________________________________________________
consensus CAATTCATATAATGCTTCTCAGCCCACAAGTTCTGAGGTGACTGAGCTGCCATACTTTGC
 
. : . : . : . : . : . :
rJMSF019E02+ TACTGAGATCACAACACATTCAACTCCTTATGCTATTTCTTTAGCCAAGCATCTAAGTTC
rJMFF038M04+ TACTGAGATCACAACACATTCAACTCCTTATGCTATTTCTTTAGCCAAGCATCTAAGTTC
rJMFF022P20+ TACTGAGATCACAACACATTCAACTCCTTATGCTATTTCTTTAGCCAAGCATCTAAGTTC
                      ____________________________________________________________
consensus TACTGAGATCACAACACATTCAACTCCTTATGCTATTTCTTTAGCCAAGCATCTAAGTTC
 
. : . : . : . : . : . :
rJMSF019E02+ AATAGGAGCAAAAATGTATGGGGCTTTTTGGTGTTCACATTGTCAATATCAGAAGCAGAT
rJMFF038M04+ AATAGGAGCAAAAATGTATGGGGCTTTTTGGTGTTCACATTGTCAATATCAGAAGCAGAT
rJMFF022P20+ AATAGGAGCAAAAATGTATGGGGCTTTTTGGTGTTCACATTGTCAATATCAGAAGCAGAT
                      ____________________________________________________________
consensus AATAGGAGCAAAAATGTATGGGGCTTTTTGGTGTTCACATTGTCAATATCAGAAGCAGAT
 
. : . : . : . : . : . :
rJMSF019E02+ GTTTGGGCAAGAAGCAGCAGAGCTATTGAACTATGTGGAATGCTTTCCTAATGGGTTCAA
rJMFF038M04+ GTTTGGGCAAGAAGCAGCAGAGCTATTGAACTATGTGGAATGCTTTCCTAATGGGTTCAA
rJMFF022P20+ GTTTGGGCAAGAAGCAGCAGAGCTATTGAACTATGTGGAATGCTTTCCTAATGGGTTCAA
                      ____________________________________________________________
consensus GTTTGGGCAAGAAGCAGCAGAGCTATTGAACTATGTGGAATGCTTTCCTAATGGGTTCAA
 
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rJMSF019E02+ GAAAGGAACTAATATGGCTTTGGAATGTGCCCTTGTTAAGATCGAAGGGTTCCCAATGTG
rJMFF038M04+ GAAAGGAACTAATATGGCTTTGGAATGTGCCCTTGTTAAGATCGAAGGGTTCCCAATGTG
rJMFF022P20+ GAAAGGAACTAATATGGCTTTGGAATGTGCCCTTGTTAAGATCGAAGGGTTCCCAATGTG
                      ____________________________________________________________
consensus GAAAGGAACTAATATGGCTTTGGAATGTGCCCTTGTTAAGATCGAAGGGTTCCCAATGTG
 
. : . : . : . : . : . :
rJMSF019E02+ GGTGATCAATGGACAGGTTCTAAATGGAGATCAGGAGCTTTCTGAGCTGGCTAAGGTGTC
rJMFF038M04+ GGTGATCAATGGACAGGTTCTAAATGGAGATCAGGAGCTTTCTGAGCTGGCTAAGGTGTC
rJMFF022P20+ GGTGATCAATGGACAGGTTCTAAATGGAGATCAGGAGCTTTCTGAGCTGGCTAAGGTGTC
                      ____________________________________________________________
consensus GGTGATCAATGGACAGGTTCTAAATGGAGATCAGGAGCTTTCTGAGCTGGCTAAGGTGTC
 
. : . : . : . : . : . :
rJMSF019E02+ GGGATTCAAATATGATGCATCTAGTGTAGCAAACTGACCTTTATTCATGGAACTAACGTT
rJMFF038M04+ GGGATTCAAATATGATGCATCTAGTGTAGCAAACTGACCTTTATTCATGGAACTAACGTT
rJMFF022P20+ GGGATTCAAATATGATGCATCTAGTGTAGCAAACTGACCTTTATTCATGGAACTAACGTT
                      ____________________________________________________________
consensus GGGATTCAAATATGATGCATCTAGTGTAGCAAACTGACCTTTATTCATGGAACTAACGTT
 
. : . : . : . : . : . :
rJMSF019E02+ GCGATTTGCTCTGTATTCCTATAGTCAATGAGGGAATTCCCTGTTTTTTTCACTTTCCCA
rJMFF038M04+ GCGATTTGCTCTGTATTCCTATAGTCAATGAGGGAATTCCCTGTTTTTTTCACTTTCCCA
rJMFF022P20+ GCGATTTGCTCTGTATTCCTATAGTCAATGAGGGAATTCCCTGTTTTTTTCACTTTCCCA
                      ____________________________________________________________
consensus GCGATTTGCTCTGTATTCCTATAGTCAATGAGGGAATTCCCTGTTTTTTTCACTTTCCCA
 
. : . : . : . : . : . :
rJMSF019E02+ TGTAAAGTAGTTCACCACTTT
rJMFF038M04+ TGTAAAGTAGTTCACCACTTTGTATACTTGTTTTAAGCTATTCTTAATTAGAGACGGAGA
rJMFF022P20+ TGTAAAGTAGTTCACCACTTTGTATACTTGTTTTAAGCTATTCTTAATTAGAGACGGAGA
                      ____________________________________________________________
consensus TGTAAAGTAGTTCACCACTTTGTATACTTGTTTTAAGCTATTCTTAATTAGAGACGGAGA
 
. : . : . : . : . : . :
rJMFF038M04+ GGGTGGATTGGAGGATGGGTAGTGGTGTGTGTTAATCTTCAGAGTCAGCTATTTGTCATT
rJMFF022P20+ GGGTGGATTGGAGGATGGGTAGTGGTGTGTGTTAATCTTCAGAGTCAGCTATTTGTCATT
                      ____________________________________________________________
consensus GGGTGGATTGGAGGATGGGTAGTGGTGTGTGTTAATCTTCAGAGTCAGCTATTTGTCATT
 
. : . : . : . : . : . :
rJMFF038M04+ TTGTCCCAGTACTAGATTCTAATTTTCCCCCAAAAAACAAAAATAAATGCGTATAAATAT
rJMFF022P20+ TTGTCCCAGTACTAGATTCTAATTTTCCCCCAAAAAACAAAAATAAATGCGTATAAATAT
                      ____________________________________________________________
consensus TTGTCCCAGTACTAGATTCTAATTTTCCCCCAAAAAACAAAAATAAATGCGTATAAATAT