Contig 001109:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022P20Sequence544003700 (4)ref|NP_001234279.1|6e-29anti-PCD protein-like [Solanum lycopersicum] gb|ABA41597.1| putative anti-PCD pr767001109 (3)ref|XP_011022240.1|3e-58PREDICTED: thiol-disulfide oxidoreductase LTO1 isoform X2 [Populus euphratica]
JMFF038M04Sequence612003700 (4)ref|NP_001234279.1|1e-28anti-PCD protein-like [Solanum lycopersicum] gb|ABA41597.1| putative anti-PCD pr766001109 (3)ref|XP_011022240.1|3e-58PREDICTED: thiol-disulfide oxidoreductase LTO1 isoform X2 [Populus euphratica]
JMSF019E02Sequence313003700 (4)ref|XP_006340794.1|57.8PREDICTED: uncharacterized protein LOC102581146 [Solanum tuberosum]742001109 (3)ref|XP_011022240.1|1e-79PREDICTED: thiol-disulfide oxidoreductase LTO1 isoform X2 [Populus euphratica]

Alignment

This contig is upended


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rJMSF019E02+                                                                     A
                      ____________________________________________________________
consensus                                                                        A
 
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rJMSF019E02+          AGAGGCTAGCGGGCGATTTGTTTTACCTGGCACAACTACTTCTATGGCTGCTGCGAGTGC
                      ____________________________________________________________
consensus             AGAGGCTAGCGGGCGATTTGTTTTACCTGGCACAACTACTTCTATGGCTGCTGCGAGTGC
 
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rJMSF019E02+          ATACTTTTTGTACATCCTAAGTACGAGATTCCCCGGGGAGTGGTGTTTATATTGTTTAAT
                      ____________________________________________________________
consensus             ATACTTTTTGTACATCCTAAGTACGAGATTCCCCGGGGAGTGGTGTTTATATTGTTTAAT
 
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rJMSF019E02+          ATCTGCTGTCTTATCCTTCAGTTTGTTCTTCACTACTGTAAAGGGTTTGGGATTAGAGGA
rJMFF038M04+                        CCTTCAGTTNGTTCTTCACTACTGTAAAGGGTTTGGGATTAGAGGA
rJMFF022P20+                        CCTTCAGTTNGTTCTTCACTACTGTAAAGGGTTTGGGATTAGAGGA
                      ____________________________________________________________
consensus             ATCTGCTGTCTTATCCTTCAGTTTGTTCTTCACTACTGTAAAGGGTTTGGGATTAGAGGA
 
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rJMSF019E02+          GGTAAAAAAAGAACTGGTTTTACAGCTATCTGTAGTGCTCTTGGTGGTTGCTGCCTTAAC
rJMFF038M04+          GGTAAAAAAAGAACTGGTTTTACAGCTATCTGTAGTGCTCTTGGTGGTTGCTGCCTTAAC
rJMFF022P20+          GGTAAAAAAAGAACTGGTTTTACAGCTATCTGTAGTGCTCTTGGTGGTTGCTGCCTTAAC
                      ____________________________________________________________
consensus             GGTAAAAAAAGAACTGGTTTTACAGCTATCTGTAGTGCTCTTGGTGGTTGCTGCCTTAAC
 
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rJMSF019E02+          CAATTCATATAATGCTTCTCAGCCCACAAGTTCTGAGGTGACTGAGCTGCCATACTTTGC
rJMFF038M04+          CAATTCATATAATGCTTCTCAGCCCACAAGTTCTGAGGTGACTGAGCTGCCATACTTTGC
rJMFF022P20+          CAATTCATATAATGCTTCTCAGCCCACAAGTTCTGAGGTGACTGAGCTGCCATACTTTGC
                      ____________________________________________________________
consensus             CAATTCATATAATGCTTCTCAGCCCACAAGTTCTGAGGTGACTGAGCTGCCATACTTTGC
 
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rJMSF019E02+          TACTGAGATCACAACACATTCAACTCCTTATGCTATTTCTTTAGCCAAGCATCTAAGTTC
rJMFF038M04+          TACTGAGATCACAACACATTCAACTCCTTATGCTATTTCTTTAGCCAAGCATCTAAGTTC
rJMFF022P20+          TACTGAGATCACAACACATTCAACTCCTTATGCTATTTCTTTAGCCAAGCATCTAAGTTC
                      ____________________________________________________________
consensus             TACTGAGATCACAACACATTCAACTCCTTATGCTATTTCTTTAGCCAAGCATCTAAGTTC
 
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rJMSF019E02+          AATAGGAGCAAAAATGTATGGGGCTTTTTGGTGTTCACATTGTCAATATCAGAAGCAGAT
rJMFF038M04+          AATAGGAGCAAAAATGTATGGGGCTTTTTGGTGTTCACATTGTCAATATCAGAAGCAGAT
rJMFF022P20+          AATAGGAGCAAAAATGTATGGGGCTTTTTGGTGTTCACATTGTCAATATCAGAAGCAGAT
                      ____________________________________________________________
consensus             AATAGGAGCAAAAATGTATGGGGCTTTTTGGTGTTCACATTGTCAATATCAGAAGCAGAT
 
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rJMSF019E02+          GTTTGGGCAAGAAGCAGCAGAGCTATTGAACTATGTGGAATGCTTTCCTAATGGGTTCAA
rJMFF038M04+          GTTTGGGCAAGAAGCAGCAGAGCTATTGAACTATGTGGAATGCTTTCCTAATGGGTTCAA
rJMFF022P20+          GTTTGGGCAAGAAGCAGCAGAGCTATTGAACTATGTGGAATGCTTTCCTAATGGGTTCAA
                      ____________________________________________________________
consensus             GTTTGGGCAAGAAGCAGCAGAGCTATTGAACTATGTGGAATGCTTTCCTAATGGGTTCAA
 
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rJMSF019E02+          GAAAGGAACTAATATGGCTTTGGAATGTGCCCTTGTTAAGATCGAAGGGTTCCCAATGTG
rJMFF038M04+          GAAAGGAACTAATATGGCTTTGGAATGTGCCCTTGTTAAGATCGAAGGGTTCCCAATGTG
rJMFF022P20+          GAAAGGAACTAATATGGCTTTGGAATGTGCCCTTGTTAAGATCGAAGGGTTCCCAATGTG
                      ____________________________________________________________
consensus             GAAAGGAACTAATATGGCTTTGGAATGTGCCCTTGTTAAGATCGAAGGGTTCCCAATGTG
 
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rJMSF019E02+          GGTGATCAATGGACAGGTTCTAAATGGAGATCAGGAGCTTTCTGAGCTGGCTAAGGTGTC
rJMFF038M04+          GGTGATCAATGGACAGGTTCTAAATGGAGATCAGGAGCTTTCTGAGCTGGCTAAGGTGTC
rJMFF022P20+          GGTGATCAATGGACAGGTTCTAAATGGAGATCAGGAGCTTTCTGAGCTGGCTAAGGTGTC
                      ____________________________________________________________
consensus             GGTGATCAATGGACAGGTTCTAAATGGAGATCAGGAGCTTTCTGAGCTGGCTAAGGTGTC
 
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rJMSF019E02+          GGGATTCAAATATGATGCATCTAGTGTAGCAAACTGACCTTTATTCATGGAACTAACGTT
rJMFF038M04+          GGGATTCAAATATGATGCATCTAGTGTAGCAAACTGACCTTTATTCATGGAACTAACGTT
rJMFF022P20+          GGGATTCAAATATGATGCATCTAGTGTAGCAAACTGACCTTTATTCATGGAACTAACGTT
                      ____________________________________________________________
consensus             GGGATTCAAATATGATGCATCTAGTGTAGCAAACTGACCTTTATTCATGGAACTAACGTT
 
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rJMSF019E02+          GCGATTTGCTCTGTATTCCTATAGTCAATGAGGGAATTCCCTGTTTTTTTCACTTTCCCA
rJMFF038M04+          GCGATTTGCTCTGTATTCCTATAGTCAATGAGGGAATTCCCTGTTTTTTTCACTTTCCCA
rJMFF022P20+          GCGATTTGCTCTGTATTCCTATAGTCAATGAGGGAATTCCCTGTTTTTTTCACTTTCCCA
                      ____________________________________________________________
consensus             GCGATTTGCTCTGTATTCCTATAGTCAATGAGGGAATTCCCTGTTTTTTTCACTTTCCCA
 
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rJMSF019E02+          TGTAAAGTAGTTCACCACTTT                                       
rJMFF038M04+          TGTAAAGTAGTTCACCACTTTGTATACTTGTTTTAAGCTATTCTTAATTAGAGACGGAGA
rJMFF022P20+          TGTAAAGTAGTTCACCACTTTGTATACTTGTTTTAAGCTATTCTTAATTAGAGACGGAGA
                      ____________________________________________________________
consensus             TGTAAAGTAGTTCACCACTTTGTATACTTGTTTTAAGCTATTCTTAATTAGAGACGGAGA
 
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rJMFF038M04+          GGGTGGATTGGAGGATGGGTAGTGGTGTGTGTTAATCTTCAGAGTCAGCTATTTGTCATT
rJMFF022P20+          GGGTGGATTGGAGGATGGGTAGTGGTGTGTGTTAATCTTCAGAGTCAGCTATTTGTCATT
                      ____________________________________________________________
consensus             GGGTGGATTGGAGGATGGGTAGTGGTGTGTGTTAATCTTCAGAGTCAGCTATTTGTCATT
 
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rJMFF038M04+          TTGTCCCAGTACTAGATTCTAATTTTCCCCCAAAAAACAAAAATAAATGCGTATAAATAT
rJMFF022P20+          TTGTCCCAGTACTAGATTCTAATTTTCCCCCAAAAAACAAAAATAAATGCGTATAAATAT
                      ____________________________________________________________
consensus             TTGTCCCAGTACTAGATTCTAATTTTCCCCCAAAAAACAAAAATAAATGCGTATAAATAT