clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF012F15 | Sequence | 467 | 000777 (7) | 764 | 001105 (6) | ref|XP_009792511.1| | 2e-106 | PREDICTED: tubby-like F-box protein 3 isoform X2 [Nicotiana sylvestris] | |||
JMFF021L04 | Sequence | 568 | 000777 (7) | 711 | 001105 (6) | ref|XP_009624999.1| | 2e-96 | PREDICTED: tubby-like F-box protein 3 isoform X2 [Nicotiana tomentosiformis] | |||
JMSF026I23 | Sequence | 620 | 000777 (7) | 736 | 001105 (6) | ref|XP_009792511.1| | 1e-102 | PREDICTED: tubby-like F-box protein 3 isoform X2 [Nicotiana sylvestris] | |||
JMSF029O13 | Sequence | 612 | 000777 (7) | 734 | 001105 (6) | ref|XP_009624993.1| | 8e-85 | PREDICTED: tubby-like F-box protein 3 isoform X1 [Nicotiana tomentosiformis] | |||
JMSF033G02 | Sequence | 631 | 000777 (7) | 753 | 001105 (6) | ref|XP_009792511.1| | 3e-109 | PREDICTED: tubby-like F-box protein 3 isoform X2 [Nicotiana sylvestris] | |||
JMSF053A07 | Sequence | 601 | 000777 (7) | 860 | 001105 (6) | ref|XP_009792511.1| | 2e-111 | PREDICTED: tubby-like F-box protein 3 isoform X2 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF053A07+ ATCGGGAAATTGAGGTCAAATTTTTCTGGGAACCAAGTT
____________________________________________________________
consensus ATCGGGAAATTGAGGTCAAATTTTTCTGGGAACCAAGTT
. : . : . : . : . : . :
rJMSF053A07+ CACAGTGTATGATGCTTCATTGGCGCATGCTGGAGTGAAAATGGTGAAAAAGTAGATCCA
rJMSF033G02+ A
____________________________________________________________
consensus CACAGTGTATGATGCTTCATTGGCGCATGCTGGAGTGAAAATGGTGAAAAAGTAGATCCA
. : . : . : . : . : . :
rJMSF053A07+ CTAGGCTTGTGGCCTTAAAGCAAATTGCTCCAAGAGTG-CCCGTTAGCAACTACGAAGTA
rJMSF033G02+ CTAGGCTTGTGGCCTTAAAGCAAATTGCTCCCAGAGTG-CCCGTTAGCAACTACGAAGTA
rJMSF026I23+ AAGCAAATTGCTCCAAGAGTGCCCCGTTAGCAACTACGAAGTA
rJMSF029O13+ AAGCAAATTGCTCCAAGAGTG-CCCGTTAGCAACTACGAAGTA
rJMFF012F15+ AAGCAAATTGCTCCAAGAGTG-CCCGTTAGCAACTACGAAGTA
____________________________________________________________
consensus CTAGGCTTGTGGCCTTAAAGCAAATTGCTCCAAGAGTG-CCCGTTAGCAACTACGAAGTA
. : . : . : . : . : . :
rJMSF053A07+ GCTCACATTTCATATGAGTTGAACGTGCTTGGAGCCAGGGGTCCAAGAAGAATGCAGTGT
rJMSF033G02+ GCTCACATTTCATATGAGTTGAACGTGCTTGGAGCCAGGGGTCCAAGAAGAATGCAGTGT
rJMSF026I23+ GCTCACATTTCATATGAGTTGAACGTGCTTGGAGCCAGGGGTCCAAGAAGAATGCAGTGT
rJMSF029O13+ GCTCACATTTCATATGAGTTGAACGTGCTTGGAGCCAGGGGTCCAAGAAGAATGCAGT-T
rJMFF012F15+ GCTCACATTTCATATGAGTTGAACGTGCTTGGAGCCAGGGGTCCAAGAAGAATGCAGTGT
rJMFF021L04+ TTCATATGAGTTGAACGTGCTTGGAGCCAGGGGTCCAAGAAGAATGCAGTGT
____________________________________________________________
consensus GCTCACATTTCATATGAGTTGAACGTGCTTGGAGCCAGGGGTCCAAGAAGAATGCAGTGT
. : . : . : . : . : . :
rJMSF053A07+ GTTATGGATAGCATCCCAGCTTGTGCCATTAAACCTGGGGGTGTGGCCCCAACACAGACT
rJMSF033G02+ GTTATGGATAGCATCCCAGCTTGTGCCATTAAACCTGGGGGTGTGGCCCCAACACAGACT
rJMSF026I23+ GTTATGGATAGCATCCCAGCTTGTGCCATTAAACCTGGGGGTGTGGCCCCAACACAGACT
rJMSF029O13+ GTTATGGATAGCATCCCAGCTTGTGCCATTAAACCTGGGGGTGTGGCCCCAACACAGACT
rJMFF012F15+ GTTATGGATAGCATCCCAGCTTGTGCCATTAAACCTGGGGGTGTGGCCCCAACACAGACT
rJMFF021L04+ GTTATGGATAGCATCCCAGCTTGTGCCATTAAACCTGGGGGTGTGGCCCCAACACAGACT
____________________________________________________________
consensus GTTATGGATAGCATCCCAGCTTGTGCCATTAAACCTGGGGGTGTGGCCCCAACACAGACT
. : . : . : . : . : . :
rJMSF053A07+ GATTTTCCAGTTAGCAATAATGATTCATTTTCAACAATACCGTTTTCCCGATCAAAATCA
rJMSF033G02+ GATTTTCCAGTTAGCAATAATGATTCATTTTCAACAATACCGTTTTCCCGATCAAAATCA
rJMSF026I23+ GATTTTCCAGTTAGCAATAATGATTCATTTTCAACAATACCGTTTTCCCGATCAAAATCA
rJMSF029O13+ GATTTTCCAGTTAGCAATAATGATTCATTTTCAACAATACCGTTTTCCCGATCAAAATCA
rJMFF012F15+ GATTTTCCAGTTAGCAATAATGATTCATTTTCAACAATACCGTTTTCCCGATCAAAATCA
rJMFF021L04+ GATTTTCCAGTTAGCAATAATGATTCATTTTCAACAATACCGTTTTCCCGATCAAAATCA
____________________________________________________________
consensus GATTTTCCAGTTAGCAATAATGATTCATTTTCAACAATACCGTTTTCCCGATCAAAATCA
. : . : . : . : . : . :
rJMSF053A07+ GCCAGTGTGGAGAAATCTTTATCTGGATCCCTGGAGAACCAAACAGAGGGAGCACTAGTT
rJMSF033G02+ GCCAGTGTGGAGAAATCTTTATCTGGATCCCTGGAGAACCAAACAGAGGGAGCACTAGTT
rJMSF026I23+ GCCAGTGTGGAGAAATCTTTATCTGGATCCCTGGAGAACCAAACAGAGGGAGCACTAGTT
rJMSF029O13+ GCCAGTGTGGAGAAATCTTTATCTGGATCCCTGGAGAACCAAACAGAGGGAGCACTAGTT
rJMFF012F15+ GCCAGTGTGGAGAAATCTTTATCTGGATCCCTGGAGAACCAAACAGAGGGAGCACTAGTT
rJMFF021L04+ GCCAGTGTGGAGAAATCTTTATCTGGATCCCTGGAGAACCAAACAGAGGGAGCACTAGTT
____________________________________________________________
consensus GCCAGTGTGGAGAAATCTTTATCTGGATCCCTGGAGAACCAAACAGAGGGAGCACTAGTT
. : . : . : . : . : . :
rJMSF053A07+ TTGAGAAACAAGGCTCCAAGATGGCATGAGCAACTCCAATGCTGGTGTTTGAACTTTCAT
rJMSF033G02+ TTGAGAAACAAGGCTCCAAGATGGCATGAGCAACTCCAATGCTGGTGTTTGAACTTTCAT
rJMSF026I23+ TTGAGAAACAAGGCTCCAAGATGGCATGAGCAACTCCAATGCTGGTGTTTGAACTTTCAT
rJMSF029O13+ TTGAGAAACAAGGCTCCAAGATGGCATGAGCAACTCCAATGCTGGTGTTTGAACTTTCAT
rJMFF012F15+ TTGAGAAACAAGGCTCCAAGATGGCATGAGCAACTCCAATGCTGGTGTTTGAACTTTCAT
rJMFF021L04+ TTGAGAAACAAGGCTCCAAGATGGCATGAGCAACTCCAATGCTGGTGTTTGAACTTTCAT
____________________________________________________________
consensus TTGAGAAACAAGGCTCCAAGATGGCATGAGCAACTCCAATGCTGGTGTTTGAACTTTCAT
. : . : . : . : . : . :
rJMSF053A07+ GGACGGGTAACAGTTGCATCAGTAAAAAATTTTCAGTTGGTGGCTGCTCCTGAAAATGGG
rJMSF033G02+ GGACGGGTAACAGTTGCATCAGTAAAAAATTTTCAGTTGGTGGCTGCTCCTGAAAATGGG
rJMSF026I23+ GGACGGGTAACAGTTGCATCAGTAAAAAATTTTCAGTTGGTGGCTGCTCCTGAAAATGGG
rJMSF029O13+ GGACGGGTAACAGTTGCATCAGTAAAAAATTTTCAGTTGGTGGCTGCTCCTGAAAATGGG
rJMFF012F15+ GGACGGGTAACAGTTGCATCAGTAAAAAATTTTCAGTTGGTGGCTGCTCCTGAAAATGGG
rJMFF021L04+ GGACGGGTAACAGTTGCATCAGTAAAAAATTTTCAGTTGGTGGCTGCTCCTGAAAATGGG
____________________________________________________________
consensus GGACGGGTAACAGTTGCATCAGTAAAAAATTTTCAGTTGGTGGCTGCTCCTGAAAATGGG
. : . : . : . : . : . :
rJMSF053A07+ GTGAGTGGGCCAGAGCATGAGAAAGTCATTCTACAGTTTGGGAAAGTAGCCAAGGATGTA
rJMSF033G02+ GTGAGTGGGCCAGAGCATGAGAAAGTCATTCTACAGTTTGGGAAAGTAGCCAAGGATGTA
rJMSF026I23+ GTGAGTGGGCCAGAGCATGAGAAAGTCATTCTACAGTTTGGGAAAGTAGCCAAGGATGTA
rJMSF029O13+ GTGAGTGGGCCAGAGCATGAGAAAGTCATTCTACAGTTTGGGAAAGTAGCCAAGGATGTA
rJMFF012F15+ GTGAGTGGGCCAGAGCATGAGAAAGTCATTCTACAGTTTGGGAAAGTAGCCAAGGATGTA
rJMFF021L04+ GTGAGTGGGCCAGAGCATGAGAAAGTCATTCTACAGTTTGGGAAAGTAGCCAAGGATGTA
____________________________________________________________
consensus GTGAGTGGGCCAGAGCATGAGAAAGTCATTCTACAGTTTGGGAAAGTAGCCAAGGATGTA
. : . : . : . : . : . :
rJMSF053A07+ TTTACTATGGATTTCCGCTACCCATTGTCAGCATTCCAGGCATTTGCCATCTGTCTTAGC
rJMSF033G02+ TTTACTATGGATTTCCGCTACCCATTGTCAGCATTCCAGGCATTTGCCATCTGTCTTAGC
rJMSF026I23+ TTTACTATGGATTTCCGCTACCCATTGTCAGCATTCCAGGCATTTGCCATCTGTCTTAGC
rJMSF029O13+ TTTACTATGGATTTCCGCTACCCATTGTCAGCATTCCAGGCATTTGCCATCTGTCTTAGC
rJMFF012F15+ TTTACTATGGATTTCCGCTACCCATTGTCAGCATTCCAGGCATTTGCCATCTGTCTTAGC
rJMFF021L04+ TTTACTATGGATTTCCGCTACCCATTGTCAGCATTCCAGGCATTTGCCATCTGTCTTAGC
____________________________________________________________
consensus TTTACTATGGATTTCCGCTACCCATTGTCAGCATTCCAGGCATTTGCCATCTGTCTTAGC
. : . : . : . : . : . :
rJMSF053A07+ AGCTTTGATACCAAGATTGCTTGTGAATAACATGGATTCAGAGGAACGGAAGGAAAGATT
rJMSF033G02+ AGCTTTGATACCAAGATTGCTTGTGAATAACATGGATTCAGAGGAACGGAAGGAAAGATT
rJMSF026I23+ AGCTTTGATACCAAGATTGCTTGTGAATAACATGGATTCAGAGGAACGGAAGGAAAGATT
rJMSF029O13+ AGCTTTGATACCAAGATTGCTTGTGAATAACATGGATTCAGAGGAACGGAAGGAAAGATT
rJMFF012F15+ AGCTTTGATACCAAGATTGCTTGTGAATAACATGGATTCAGAGGAACGGAAGGAAAGATT
rJMFF021L04+ AGCTTTGATACCAAGATTGCTTGTGAATAACATGGATTCAGAGGAACGGAAGGAAAGATT
____________________________________________________________
consensus AGCTTTGATACCAAGATTGCTTGTGAATAACATGGATTCAGAGGAACGGAAGGAAAGATT
. : . : . : . : . : . :
rJMSF053A07+ GTTTGGCAAAACCAAATAAACAGTCTGAAGTGGTTGCTTGCATTGCGGAGCTAGCTAGCA
rJMSF033G02+ GTTTGGCAAAACCAAATAAACAGTCTGAAGTGGTTGCTTGCATTGCGGAGCTAGCTAGCA
rJMSF026I23+ GTTTGGCAAAACCAAATAAACAGTCTGAAGTGGTTGCTTGCATTGCGGAGCTAGCTAGCA
rJMSF029O13+ GTTTGGCAAAACCAAATAAACAGTCTGAAGTGGTTGCTTGCATTGCGGAGCTAGCTAGCA
rJMFF012F15+ GTTTGGCAAAACCAAATAAACAGTCTGAAGTGGTTGCTTGCATTGCGGAGCTAGCTAGCA
rJMFF021L04+ GTTTGGCAAAACCAAATAAACAGTCTGAAGTGGTTGCTTGCATTGCGGAGCTAGCTAGCA
____________________________________________________________
consensus GTTTGGCAAAACCAAATAAACAGTCTGAAGTGGTTGCTTGCATTGCGGAGCTAGCTAGCA
. : . : . : . : . : . :
rJMSF053A07+ TGATATGATGTTATTCACAATTTACCTTCAAATGTTTTCTTAATACAAAGACTAGTCAGT
rJMSF033G02+ TGATATGATGTTATTCACAATTTACCTTCAAATGTTTTCTTAATACAAAGACTAGTCAGT
rJMSF026I23+ TGATATGATGTTATTCACAATTTACCTTCAAATGTTTTCTTAATACAAAGACTAGTCAGT
rJMSF029O13+ TGATATGATGTTATTCACAATTTACCTTCAAATGTTTTCTTAATACAAAGACTAGTCAGT
rJMFF012F15+ TGATATGATGTTATTCACAATTTACCTTCAAATGTTTTCTTAATACAAAGACTAGTCAGT
rJMFF021L04+ TGATATGATGTTATTCACAATTTACCTTCAAATGTTTTCTTAATACAAAGACTAGTCAGT
____________________________________________________________
consensus TGATATGATGTTATTCACAATTTACCTTCAAATGTTTTCTTAATACAAAGACTAGTCAGT
. : . : . : . : . : . :
rJMSF053A07+ GA-TGGTTGTATGTTTAATTAGGGGCATTGG
rJMSF033G02+ GA-TGGTTGTATGTTTAATTAGGGGCATTGGCTG
rJMSF026I23+ GA-TGGTTGTATGTTTAATTAGGGGCATTGGCTG
rJMSF029O13+ GACTGGTTGTATGTTTAATTAGGGGCATTGGCT
rJMFF012F15+ GA-TGGTTGTATGTTTAATTAGGGGCATTGGCTGTTGTTCATTAATTTGTCTACATTACT
rJMFF021L04+ GA-TGGTTGTATGTTTAATTAGGGGCATTGGCTGTTGTTCATTAATTTGTCTACATTACT
____________________________________________________________
consensus GA-TGGTTGTATGTTTAATTAGGGGCATTGGCTGTTGTTCATTAATTTGTCTACATTACT