Contig 001098:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF032D12+                                            GCGGCCATCACATGNTTTACTCAGGT
                      ____________________________________________________________
consensus                                               GCGGCCATCACATGNTTTACTCAGGT
 
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rJMSF032D12+          GTTGTAGCTGGTGCCAGGGAGGCATTGTTTAGTGGTGTTCCATCCATATCAATATCTCTT
                      ____________________________________________________________
consensus             GTTGTAGCTGGTGCCAGGGAGGCATTGTTTAGTGGTGTTCCATCCATATCAATATCTCTT
 
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rJMSF032D12+          AATTGGAAGAGCAATGAAAGCCAGGAAAGTGATTTCAAGGATGCTGCAAGTGTTTGTTTA
                      ____________________________________________________________
consensus             AATTGGAAGAGCAATGAAAGCCAGGAAAGTGATTTCAAGGATGCTGCAAGTGTTTGTTTA
 
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rJMSF032D12+          CCTTTAATTACTGGAGCTATTAGGGATATAGAGAAGGGTGCTTTCCCCAAATTTTGCTCG
rJMSF003A17+                                                       CCCAAATTTTGCTCG
                      ____________________________________________________________
consensus             CCTTTAATTACTGGAGCTATTAGGGATATAGAGAAGGGTGCTTTCCCCAAATTTTGCTCG
 
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rJMSF032D12+          CTTAATGTGGAAATTCCAACCTCTCCTCTTGCTAACAAGGGATTCAAATTAACAAAGCAG
rJMSF003A17+          CTTAATGTGGAAATTCCAACCTCTCCTCTTGCTAACAAGGGATTCAAATTAACAAAGCAG
                      ____________________________________________________________
consensus             CTTAATGTGGAAATTCCAACCTCTCCTCTTGCTAACAAGGGATTCAAATTAACAAAGCAG
 
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rJMSF032D12+          AGTCTTTGGAGATCAACACTAAACTGGAATGCTATTCCAGCCAACAGGAATCTTGCTTCA
rJMSF003A17+          AGTCTTTGGAGATCAACACTAAACTGGAATGCTATTCCAGCCAACAGGAATCTTGCTTCA
                      ____________________________________________________________
consensus             AGTCTTTGGAGATCAACACTAAACTGGAATGCTATTCCAGCCAACAGGAATCTTGCTTCA
 
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rJMSF032D12+          TCGCGCTTTCTCTCTAATCAGCAAAGTCTTGGCTTGCAGCTTGCTCAGCTTGGCCGAGAT
rJMFF005I21+                                              CAGCTTGCTCAGCTTGGCCGAGAT
rJMSF003A17+          TCGCGCTTTCTCTCTAATCAGCAAAGTCTTGGCTTGCAGCTTGCTCAGCTTGGCCGAGAT
                      ____________________________________________________________
consensus             TCGCGCTTTCTCTCTAATCAGCAAAGTCTTGGCTTGCAGCTTGCTCAGCTTGGCCGAGAT
 
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rJMSF032D12+          GCTTCTGCTGCTGGTGCTGCGCGCCGCTTGACCACACAGAGGAAGAGTATAGAGGTTGTT
rJMFF005I21+          GCTTCTGCTGCTGGTGCTGCGCGCCGCTTGACCACACAGAGGAAGAGTATAGAGGTTGTT
rJMSF003A17+          GCTTCTGCTGCTGGTGCTGCGCGCCGCTTGACCACACAGAGGAAGAGTATAGAGGTTGTT
                      ____________________________________________________________
consensus             GCTTCTGCTGCTGGTGCTGCGCGCCGCTTGACCACACAGAGGAAGAGTATAGAGGTTGTT
 
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rJMSF032D12+          GAATCAGTTGGTGTTGCTGGAAAGTCTGATCCCAAACGGACTGTCAAGTACTTCAGATTG
rJMFF005I21+          GAATCAGTTGGTGTTGCTGGAAAGTCTGATCCCAAACGGACTGTCAAGTACTTCAGATTG
rJMSF003A17+          GAATCAGTTGGTGTTGCTGGAAAGTCTGATCCCAAACGGACTGTCAAGTACTTCAGATTG
                      ____________________________________________________________
consensus             GAATCAGTTGGTGTTGCTGGAAAGTCTGATCCCAAACGGACTGTCAAGTACTTCAGATTG
 
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rJMSF032D12+          GAGTTACTTGACAAGAAGCAGCAAGAAGGGGATGAGGATTTAGATTTCCAAGCACTTGAA
rJMFF005I21+          GAGTTACTTGACAAGAAGCAGCAAGAAGGGGATGAGGATTTAGATTTCCAAGCACTTGAA
rJMSF003A17+          GAGTTACTTGACAAGAAGCAGCAAGAAGGGGATGAGGATTTAGATTTCCAAGCACTTGAA
                      ____________________________________________________________
consensus             GAGTTACTTGACAAGAAGCAGCAAGAAGGGGATGAGGATTTAGATTTCCAAGCACTTGAA
 
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rJMSF032D12+          AATGGCTTTGTTGCAGTCACTCCAATATCTCTTTC                         
rJMFF005I21+          AATGGCTTTGTTGCAGTCACTCCAATATCTCTTTCATCGCATGAACAGGACATCCGGTCA
rJMSF003A17+          AATGGCTTTGTTGCAGTCACTCCAATATCTCTTTCATCGCATGAACAGGACATCCGGTCA
                      ____________________________________________________________
consensus             AATGGCTTTGTTGCAGTCACTCCAATATCTCTTTCATCGCATGAACAGGACATCCGGTCA
 
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rJMFF005I21+          GCTGCTTCAGAGTGGATATCGACTGCCTTACAAGAAGAGCGGCAATAGACTTGTTAACCT
rJMSF003A17+          GCTGCTTCAGAGTGGATATCGACTGCCTTACAAGAAGAGCGACAATAGACTTGTTAACCT
                      ____________________________________________________________
consensus             GCTGCTTCAGAGTGGATATCGACTGCCTTACAAGAAGAGCGGCAATAGACTTGTTAACCT
 
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rJMFF005I21+          CGCTATATTTAATTCTTTTGTACATTTAAAGGTGAAGTGTTTCATTGAGGTGTTCAAAGT
rJMSF003A17+          CGCTATATTTAATTCTTTTGTACATTTAAAGGTGAAGTGTTTCATTGAGGTGTTCAAAGT
                      ____________________________________________________________
consensus             CGCTATATTTAATTCTTTTGTACATTTAAAGGTGAAGTGTTTCATTGAGGTGTTCAAAGT
 
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rJMFF005I21+          GTGCCGGGTTGTAACATTGGTGCCGTGGCTATTTATCCTTTGCCCTTTCCTATACGAACT
rJMSF003A17+          GTGCCGGGTTGTAACATTGGTGCCGTGGCTATTTATCCTTTGCCCTTTCCTATACGAACT
                      ____________________________________________________________
consensus             GTGCCGGGTTGTAACATTGGTGCCGTGGCTATTTATCCTTTGCCCTTTCCTATACGAACT
 
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rJMFF005I21+          TCCCCAATCTTTTACACTTCTGTGTTGAAGCCAATGCTTCCCTTTTTAATTTAAAAT   
rJMSF003A17+          TCCCCAATCTTTTACACTTCTGTGTTGAAGCCAATGCTTCCCTTTTTAATTTAAAATTTG
rJMFF020A16+                                                TCCCTTTTTAATTTAAAATTNG
                      ____________________________________________________________
consensus             TCCCCAATCTTTTACACTTCTGTGTTGAAGCCAATGCTTCCCTTTTTAATTTAAAATTTG
 
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rJMSF003A17+          GCAGCATGTTTGTAAAATAGTAGTAAAGTACCTTCCACCCCCCCTCTGATTTTCTCCTGA
rJMFF020A16+          GCAGCANGNTTGTAAAATAGTAGTAAAGTACCTTCCACCCCCCCTCTGATTTTCTCCTGA
                      ____________________________________________________________
consensus             GCAGCATGTTTGTAAAATAGTAGTAAAGTACCTTCCACCCCCCCTCTGATTTTCTCCTGA
 
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rJMSF003A17+          GGATGGTAAAAGTGGTTTGGCTGGGTTGAGATTCTCTTATATTTCC              
rJMFF020A16+          GGATGGTAAAAGTGGTTTGGCTGGGTTGAGATTCTCTTATATTTCCTGTCGGTTTTGGTT
                      ____________________________________________________________
consensus             GGATGGTAAAAGTGGTTTGGCTGGGTTGAGATTCTCTTATATTTCCTGTCGGTTTTGGTT
 
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rJMFF020A16+          GACAGATTTGGTGATGTGAGTTTGTTTGTTTAATCAACATTCTTGTAAGCAGAAAGAAGG
                      ____________________________________________________________
consensus             GACAGATTTGGTGATGTGAGTTTGTTTGTTTAATCAACATTCTTGTAAGCAGAAAGAAGG
 
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rJMFF020A16+          CAGGTCTAATTTATTATAGGTCCTGTGCGCTTCCTAGAGAGTTGAATGTACTGCATCTTT
                      ____________________________________________________________
consensus             CAGGTCTAATTTATTATAGGTCCTGTGCGCTTCCTAGAGAGTTGAATGTACTGCATCTTT