| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF018A12 | Sequence | 776 | 001093 (8) | ref|XP_009606082.1| | 2e-37 | PREDICTED: small ubiquitin-related modifier 2 [Nicotiana tomentosiformis] | 925 | 001093 (8) | ref|XP_010241411.1| | 9e-26 | PREDICTED: ubiquitin-like protein pmt3/smt3 isoform X1 [Nelumbo nucifera] |
| JMFF044A19 | Sequence | 637 | 001093 (8) | ref|XP_009606082.1| | 3e-38 | PREDICTED: small ubiquitin-related modifier 2 [Nicotiana tomentosiformis] | 620 | 001093 (8) | ref|XP_003552121.1| | 2e-22 | PREDICTED: small ubiquitin-related modifier 2-like [Glycine max] gb|KHN10571.1| |
| JMFS056E04 | Sequence | 634 | 001093 (8) | ref|XP_010241411.1| | 1e-40 | PREDICTED: ubiquitin-like protein pmt3/smt3 isoform X1 [Nelumbo nucifera] | |||||
| JMFS088C12 | Sequence | 634 | 001093 (8) | ref|XP_010241411.1| | 2e-40 | PREDICTED: ubiquitin-like protein pmt3/smt3 isoform X1 [Nelumbo nucifera] | |||||
| JMSF008A09 | Sequence | 191 | 001093 (8) | ref|XP_009606082.1| | 2e-11 | PREDICTED: small ubiquitin-related modifier 2 [Nicotiana tomentosiformis] | 829 | 001093 (8) | ref|XP_008230020.1| | 1e-26 | PREDICTED: small ubiquitin-related modifier 1-like [Prunus mume] ref|XP_00823002 |
This contig is upended
. : . : . : . : . : . :
rJMFF044A19- GTCTGCTCACACTTTGCATTTGCAGTATATATAATCATACAAAAG
rJMSF008A09- AAAAG
rJMFF018A12- TTGCAGTATATATAATCATACAAAAG
____________________________________________________________
consensus GTCTGCTCACACTTTGCATTTGCAGTATATATAATCATACAAAAG
. : . : . : . : . : . :
rJMFF044A19- AGTTCATTCAAAAGCAATTTCAACCCGCTGAGAGGGGACAGCTTACAGTCTACACTGGCA
rJMSF008A09- AGTTCATTCAAAAGCAATTTCAACCCGCTGAGAGGGGACAGCTTACAGTCTACACTGGCA
rJMFF018A12- AGTTCATTCAAAAGCAATTTCAACCCGCTGAGAGGGGACAGCTTACAGTCTACACTGGCA
____________________________________________________________
consensus AGTTCATTCAAAAGCAATTTCAACCCGCTGAGAGGGGACAGCTTACAGTCTACACTGGCA
. : . : . : . : . : . :
rJMFF044A19- GTGAACAACTATCAGTAATACAGAAGAAGGTGAGTCTCATGGTTTTAGACAGCATTTCAT
rJMSF008A09- GTGAACAACTATCAGTAATACAGAAGAAGGTGAGTCTCATGGTTTTAGACAGCATTTCAT
rJMFF018A12- GTGAACAACTATCAGTAATACAGAAGAAGGTGAGTCTCATGGTTTTAGACAGCATTTCAT
____________________________________________________________
consensus GTGAACAACTATCAGTAATACAGAAGAAGGTGAGTCTCATGGTTTTAGACAGCATTTCAT
. : . : . : . : . : . :
rJMFF044A19- ACCTGCTCTCTTGTAACATATGTAAATGATGTAAATAGTCATCTTCTCAGTGGATAAATG
rJMSF008A09- ACCTGCTCTCTTGTAACATATGTAAATGATGTAAATAGTCATCTTCTCAGTGGATAAATG
rJMFF018A12- ACCTGCTCTCTTGTAACATATGTAAATGATGTAAATAGTCATCTTCTCAGTGGATAAATG
____________________________________________________________
consensus ACCTGCTCTCTTGTAACATATGTAAATGATGTAAATAGTCATCTTCTCAGTGGATAAATG
. : . : . : . : . : . :
rJMFF044A19- CATATATTCCTTTCCATTCTCAGTGGATTTTTTTTGGTAACATTGTATCAATCTCATCAC
rJMSF008A09- CATATATTCCTTTCCATTCTCAGTGGATTTTTTTTGGTAACATTGTATCAATCTCATCAC
JMFS056E04+ CATTGCATCAATCTCATCAC
JMFS088C12+ CATTGCATCAATCTCATCAC
JMFF044A19+ TCTCATCAC
JMFF018A12+ ATCAATNTCATCAC
rJMFF018A12- CATATATTCCTTTCCATTCTCAGTGGATTTTTTTTGGTAACATTGTATCAATCTCATCAC
____________________________________________________________
consensus CATATATTCCTTTCCATTCTCAGTGGATTTTTTTTGGTAACATTGTATCAATCTCATCAC
. : . : . : . : . : . :
rJMFF044A19- CATCTTCCATCTCTAGCTCATCTGGAGTCTGCTCCCATCGAAGAAAGCGACCATGAAACA
rJMSF008A09- CATCTTCCATCTCTAGCTCATCTGGAGTCTGCTCCCATCGAAGAAAGCGACCATGAAACA
JMFS056E04+ CATCTTCCATCTCCAGCTCATCTGGAGTCTGCTCCCATCGAAGACGGCGACCATGAAACA
JMFS088C12+ CATCTTCCATCTCCAGCTCATCTGGAGTCTGCTCCCATCGAAGACGGCGACCATGAAACA
JMFF044A19+ CATCTTCCATCTCCAGCTCATCTGGAGTCTGCTCCCATCGAAGACGGCGACCATGAAACA
JMFF018A12+ CATNTTCCATCTCCAGCTCATCTGGAGTCTGCTCCCATCGAAGACGGCGACCATGAAACA
rJMFF018A12- CATCTTCCATCTCTAGCTCATCTGGAGTCTGCTCCCATCGAAGAAAGCGACCATGAAACA
____________________________________________________________
consensus CATCTTCCATCTCCAGCTCATCTGGAGTCTGCTCCCATCGAAGACGGCGACCATGAAACA
. : . : . : . : . : . :
rJMFF044A19- GGAAAGCTGTTGAATTAAGATCCATTGATTTGTGATCACAGTATGATTTCATGAGTCTCT
JMSF008A09+ ACAGTACGATTTCATGAGTCTCT
rJMSF008A09- GGAAAGCTGTTGAATTAAGATCCATTGATTTGTGATCACAGTATGATTTCATGAGTCTCT
JMFS056E04+ GGAAAGCTGTTGAATTAAGATCCATTGATTTGCGATCGCAGTATGATTTCATGAGTCTCT
JMFS088C12+ GGAAAGCTGTTGAATTAAGATCCATTGATTTGCGATCGCAGTATGATTTCATGAGTCTCT
JMFF044A19+ GGAAAGCTGTTGAATTAAGATCCATTGATTTGCGATCGCAGTATGATTTCATGAGTCTCT
JMFF018A12+ GGAAAGCTGTTGAATTAAGATCCATTGATTTGCGATCGCAGTATGATTTCATGAGTCTCN
rJMFF018A12- GGAAAGCTGTTGAATTAAGATCCATTGATTTGTGATCACAGTATGATTTCATGAGTCTCT
____________________________________________________________
consensus GGAAAGCTGTTGAATTAAGATCCATTGATTTGCGATCACAGTATGATTTCATGAGTCTCT
. : . : . : . : . : . :
rJMFF044A19- TCAGTCGGGTGCTTCTTTTCATCC-GAAAATCAGTTCCTCCCTTCGTCGTTTCTGTCCTT
JMSF008A09+ TCAGTCGGGTGCTTCTTTTCATCCTGAAAATCAGTTCCTCCCTTCGTCGTTTCTGTCCTC
rJMSF008A09- TCAGTCGGGTGCTTCTTTTCATCC-GAAAATCAGTTCCTCCCTTCGTCGTTTCTGTCCTT
JMFS056E04+ TCAGTCGGGTGCTTCTTTTCATCCTGAAAATCAGTTCCTCCCTTCGTCGTTTCTGTCCTT
JMFS088C12+ TCAGTCGGGTGCTTCTTTTCATCCTGAAAATCAGTTCCTCCCTTCGTCGTTTCTGTCCTT
JMFF044A19+ TCAGTCGGGTGCTTCTTTTCATCCTGAAAATCAGTTCCTCCCTTCGTCGTTTCTGTCCTT
JMFF018A12+ TCAGTCGGGTGCTTCTTTTCATCCTGAAAATCAGTTCCTCCNTTCGTCGTTTCTGTCCTT
rJMFF018A12- TCAGTCGGGTGCTTCTTTTCATCC-GAAAATCAGTTCCTCCCTTCGTCGTTTCTGTCCTT
____________________________________________________________
consensus TCAGTCGGGTGCTTCTTTTCATCCTGAAAATCAGTTCCTCCCTTCGTCGTTTCTGTCCTT
. : . : . : . : . : . :
rJMFF044A19- TGACTTTAAGGTTGATATGAGCGGCCTGGTCGCCGCAGACGGGCATCTTGTCTTCCTCTG
JMSF008A09+ TGACTTTAAGGTTGATATGAGCGGCCAGATCGCCGCCGACGGGCATCTTGTCTTCCTCTG
rJMSF008A09- TGACTTTAAGGTTGATATGAGCGGCCTGGTCGCCGCAGACGGGCATCTTGTCTTCCTCTG
JMFS056E04+ TGACTTTAAGGTTGATATGAGTGGCCTGGTTGCTGCAGACGGACATCTTGTCTTCCTCTG
JMFS088C12+ TGACTTTAAGGTTGATATGAGTGGCCTGGTTGCTGCAGACGGACATCTTGTCTTCCTCTG
JMFF044A19+ TGACTTTAAGGTTGATATGAGTGGCCTGGTTGCTGCAGACGGACATCTTGTCTTCCTCTG
JMFF018A12+ TGACTTTAAGGTTGATATGAGTGGCCTGGTTGCTGCAGACGGACATCTTGTCTTCCTCTG
rJMFF018A12- TGACTTTAAGGNTGATATGAGCGGCCTGGTCGCCGCAGACGGGCATCTTGTCTTCCTCTG
____________________________________________________________
consensus TGACTTTAAGGTTGATATGAGCGGCCTGGTCGCCGCAGACGGGCATCTTGTCTTCCTCTG
. : . : . : . : . : . :
rJMFF044A19- CTCCGGCCGACATCTCTCTTCTGTCTTTGTGCACAATAAATTGCTTATGCACAGTTTGGT
JMSF008A09+ CTCCGGCCGACATCTCACTTCTGTCTTCGTGCACAATAA
rJMSF008A09- CTCCGGCCGACATCTCTCTTCTGTCTTTGTGCACAATAAATTGCTTATGCACAGTTTGGT
JMFS056E04+ CTCTGGCCGACATCTCTCTTCTGTCTTCGTGCACAATAAATTGCTTATGCACAGTTTGGT
JMFS088C12+ CTCTGGCCGACATCTCTCTTCTGTCTTCGTGCACAATAAATTGCTTATGCACAGTTTGGT
JMFF044A19+ CTCTGGCCGACATCTCTCTTCTGTCTTCGTGCACAATAAATTGCTTATGCACAGTTTGGT
JMFF018A12+ CTCTGGCCGACATCTCTCTTCTGTCTTCGTGCACAATAAATTGCTTATGCACAGTTTGGT
rJMFF018A12- CTCCGGCCGACATCTCTCTTCTGTCTTTGTGCACAATAAATTGCTTATGCACAGTTTGGT
____________________________________________________________
consensus CTCCGGCCGACATCTCTCTTCTGTCTTCGTGCACAATAAATTGCTTATGCACAGTTTGGT
. : . : . : . : . : . :
rJMFF044A19- GTAGCATTGCATCAATCTCATCACCATCTTCCATCT
rJMSF008A09- GTAGCATTGCATCAATCTCATCACCATCTTCCATCTCCAGCTCATCCGGAGTCTGCTCCC
JMFS056E04+ GTAGCATTGCATCAATCTCATCACCATCTTCCATCTCCAGCTCATCTGGAGTCTGCTCCC
JMFS088C12+ GTAGCATTGCATCAATCTCATCACCATCTTCCATCTCCAGCTCATCTGGAGTCTGCTCCC
JMFF044A19+ GTAGCATTGCATCAATCTCATCACCATCTTCCATCTCCAGCTCATCTGGAGTCTGCTCCC
JMFF018A12+ GTAGCATTGCATCAATCTCATCACCATCTTCCATCTCCAGCTCATCTGGAGTCTGCTCCC
rJMFF018A12- GTAGCATTGCATCAATCTCATCACCATCTTCCATCTCCAGCTCATCCGGAGTCTGCTCCC
____________________________________________________________
consensus GTAGCATTGCATCAATCTCATCACCATCTTCCATCTCCAGCTCATCTGGAGTCTGCTCCC
. : . : . : . : . : . :
rJMSF008A09- ATCGAAGACGGCGACCATGAAACAGGAAAGCTGTTGAATTAAGANCCACTGATTTGTGAT
JMFS056E04+ ATCGAAGACGGCGACCATGAAACAGGAAAGCTGTTGAATTAAGATCCATTGATTTGCGAT
JMFS088C12+ ATCGAAGACGGCGACCATGAAACAGGAAAGCTGTTGAATTAAGATCCATTGATTTGCGAT
JMFF044A19+ ATCGAAGACGGCGACCATGAAACAGGAAAGCTGTTGAATTAAGATTCATTGATTTGCGAT
JMFF018A12+ ATCGAAGACGGCGACCATGAAACAGGAAAGCTGTTGAATTAAGATTCATTGATTTGCGAT
rJMFF018A12- ATCGAAGACGGCAACCATGAAACAGGAAAGCTGTTGAATTAAGATCCACTGATTTGTGAT
____________________________________________________________
consensus ATCGAAGACGGCGACCATGAAACAGGAAAGCTGTTGAATTAAGATCCATTGATTTGCGAT
. : . : . : . : . : . :
rJMSF008A09- CACAGTATGATTTCATGAGTTTCTTCAGTCGGGTGCTTCTTCTCATCCTGAAAATCAGTT
JMFS056E04+ CACAGTACGATTTCATGAGTCTCTTCAGTCGGGTGCTTCTTTTCATCCTGAAAATCAGTT
JMFS088C12+ CACAGTACGATTTCATGAGTCTCTTCAGTCGGGTGCTTCTTTTCATCCTGAAAATCAGTT
JMFF044A19+ CACAGTACGATTTCATGAGTCTCTTCAGTCGGGTGCTTCTTTTCATCCTGAAAATCAGTT
JMFF018A12+ CACAGTACGATTTCATGAGTCTCTTCAGTCGGGTGCTTCTTTTCATCCTGAAAATCAGTT
rJMFF018A12- CACAGTATGATTTCATGAGTTTCTTCAGTCGGGTGCTTCTTCTCATCCTGAAAATCAGTT
____________________________________________________________
consensus CACAGTACGATTTCATGAGTCTCTTCAGTCGGGTGCTTCTTTTCATCCTGAAAATCAGTT
. : . : . : . : . : . :
rJMSF008A09- CCTCCCTTCGTCGTTTCTGTCCTTGGACTTTAAGGTTGATATGA
JMFS056E04+ CCTCCCTTCGTCGTTTCTGTCCTCTGACTTTAAGGTTGATATGAGCGGCCAGATCGCCGC
JMFS088C12+ CCTCCCTTCGTCGTTTCTGTCCTCTGACTTTAAGGTTGATATGAGCGGCCAGATCGCCGC
JMFF044A19+ CCTCCCTTCGTCGTTTCTGTCCTCTGACTTTAAGGTTGATATGAGCGGCCAGATCGCCGC
JMFF018A12+ CCTCCCTTCGTCGTTTCTGTCCTCTGACTTTAAGGTTGATATGAGCGGCCAGATCGCCGC
rJMFF018A12- CCTCCCTTCGTCGNTTCTGTCCTTTGACTTTAAGGGTGATATGAGNGGGCCTGGTTGCTG
____________________________________________________________
consensus CCTCCCTTCGTCGTTTCTGTCCTCTGACTTTAAGGTTGATATGAGCGGCCAGATCGCCGC
. : . : . : . : . : . :
JMFS056E04+ CGACGGGCATCTTGTC-TTCCTCTG
JMFS088C12+ CGACGGGCATCTTGTC-TTCCTCTGCTCCGGCCGACATCTCACTTCTG
JMFF044A19+ CGACGGGCATCTTGTC-TTCCTCTGCTCCGGCCGACATCTCACTTCTGTCTTCGTGCACA
JMFF018A12+ CGACGGGCATCTTGTC-TTCCTCTGCTCCGGCCGACATCTCACTTCTGTCTTCGTGCACA
rJMFF018A12- CAAANNAAATCTTGTCTTTCCTCTGCTCCGGCCGAATTTTCTCTTCTGNANTGCTAAGCC
____________________________________________________________
consensus CGACGGGCATCTTGTC-TTCCTCTGCTCCGGCCGACATCTCACTTCTGTCTTCGTGCACA
. : . : . : . : . : . :
JMFF044A19+ ATAA
JMFF018A12+ ATAA
rJMFF018A12- ACAGATTTGGNGNAGNATTGNATNAANTCCNNCNCATCTTCCANTTCCCGNTCNTCNNGA
____________________________________________________________
consensus ATAAATTTGGNGNAGNATTGNATNAANTCCNNCNCATCTTCCANTTCCCGNTCNTCNNGA