Contig 001091:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017E17Sequence566017344ref|XP_009619839.1|2e-85PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Nicotiana tomentosiform744001091 (2)ref|XP_003606450.1|9e-130Isovaleryl-CoA dehydrogenase [Medicago truncatula] gb|AES88647.1| acyl-CoA dehyd
JMFN015L04Sequence582001091 (2)ref|XP_003538049.1|1e-101PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial-like [Glycine max]

Alignment

This contig is upended


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rJMFF017E17-                                              TTATTATTCTTTTGCAATTGTTCA
                      ____________________________________________________________
consensus                                                 TTATTATTCTTTTGCAATTGTTCA
 
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JMFN015L04+                                            AAAGCTGCCATTGTGTTAACCTTCAAC
rJMFF017E17-          TTACAATCAAACAAGGCCTTATTAGTGGGCAGAAAAGCTGCCATTGTGTTAACCTTCAAC
                      ____________________________________________________________
consensus             TTACAATCAAACAAGGCCTTATTAGTGGGCAGAAAAGCTGCCATTGTGTTAACCTTCAAC
 
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JMFN015L04+           TCTCAGCAAGACAAAGCTGCTTCAATTCCACTGCGTGAGAAGAACTCGTATCATAACGTG
rJMFF017E17-          TCTCAGCAAGACAAAGCTGCTTCAATTCCACTGCGTGAGAAGAACTCGTATCATAACGTG
                      ____________________________________________________________
consensus             TCTCAGCAAGACAAAGCTGCTTCAATTCCACTGCGTGAGAAGAACTCGTATCATAACGTG
 
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JMFN015L04+           GTAAATGGTAATTCCTCGTTCATTGCTCTTTAAAGAGCTCGCGACCAATTATCATTCTTC
rJMFF017E17-          GTAAATGGTAATTCCTCGTTCATTGCTCTTTAAAGAGCTCGCGACCAATTATCATTCTTC
                      ____________________________________________________________
consensus             GTAAATGGTAATTCCTCGTTCATTGCTCTTTAAAGAGCTCGCGACCAATTATCATTCTTC
 
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JMFN015L04+           TAATCTCGCTAGTGCCTGCCCCAATCTCGTAGAGTTTGGCATCGCGAAGGAAGCGCCCAG
rJMFF017E17-          TAATCTCGCTAGTGCCTGCCCCAATCTCGTAGAGTTTGGCATCGCGAAGGAAGCGCCCAG
                      ____________________________________________________________
consensus             TAATCTCGCTAGTGCCTGCCCCAATCTCGTAGAGTTTGGCATCGCGAAGGAAGCGCCCAG
 
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JMFN015L04+           TCGGGTACTCGTTTACATACCCATTACCGCCAAGACACTGAATAGCCTGAAGAGCAACTT
rJMFF017E17-          TCGGGTACTCGTTTACATACCCATTACCGCCAAGACACTGAATAGCCTGAAGAGCAACTT
                      ____________________________________________________________
consensus             TCGGGTACTCGTTTACATACCCATTACCGCCAAGACACTGAATAGCCTGAAGAGCAACTT
 
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JMFN015L04+           GAGTGGCTCTTTCAGCTGCACAGAGTATTACACCTGCACAATCCTTTGGATCAACCTTCC
rJMFF017E17-          GAGTGGCTCTTTCAGCTGCACAGAGTATTACACCTGCACAATCCTTTGGATCAACCTTCC
                      ____________________________________________________________
consensus             GAGTGGCTCTTTCAGCTGCACAGAGTATTACACCTGCACAATCCTTTGGATCAACCTTCC
 
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JMFN015L04+           CGTTGTCACAGTCTCTGGCAACCGAATAGACATATGATCTTGAGGACTGTAATGCAGTAT
rJMFF017E17-          CGTTGTCACAGTCTCTGGCAACCGAATAGACATATGATCTTGAGGACTGTAATGCAGTAT
                      ____________________________________________________________
consensus             CGTTGTCACAGTCTCTGGCAACCGAATAGACATATGATCTTGAGGACTGTAATGCAGTAT
 
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JMFN015L04+           ACATGTCGGCAATTTTGCCCTGTATAAATTGATGTTCGCCAATGGCCCTCCCGAATTGCT
rJMFF017E17-          ACATGTCGGCAATTTTGCCCTGTATAAATTGATGTTCGCCAATGGCCCTCCCGAATTGCT
                      ____________________________________________________________
consensus             ACATGTCGGCAATTTTGCCCTGTATAAATTGATGTTCGCCAATGGCCCTCCCGAATTGCT
 
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JMFN015L04+           CTCGTTGACGAACATATGGAAGTACCACATCAAGACATGCTTGCATGATTCCAAGAGGTC
rJMFF017E17-          CTCGTTGACGAACATATGGAAGTACCACATCAAGACATGCTTGCATGATTCCAAGAGGTC
                      ____________________________________________________________
consensus             CTCGTTGACGAACATATGGAAGTACCACATCAAGACATGCTTGCATGATTCCAAGAGGTC
 
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JMFN015L04+           CGGAAGCCAGAACAAGTCTTTCCAAATCCAGGCCCGACATCATGACATAAACTCCTTTCC
rJMFF017E17-          CGGAAGCCAGAACAAGTCTTTCCAAATCCAGGCCCGACATCATGACATAAACTCCTTTCC
                      ____________________________________________________________
consensus             CGGAAGCCAGAACAAGTCTTTCCAAATCCAGGCCCGACATCATGACATAAACTCCTTTCC
 
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JMFN015L04+           CTTCCTCTCCCAGAA                                             
rJMFF017E17-          CTTCCTCTCCCAGAACATTTTCTTCCGGAACAAAGCAATTTTCAAACACAAGCTCACACG
                      ____________________________________________________________
consensus             CTTCCTCTCCCAGAACATTTTCTTCCGGAACAAAGCAATTTTCAAACACAAGCTCACACG
 
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rJMFF017E17-          TATCACTTCCTCTCATCCCAAGTTTGTCTAATTTCTGGGCAGTACTGAAACCTGGCATTC
                      ____________________________________________________________
consensus             TATCACTTCCTCTCATCCCAAGTTTGTCTAATTTCTGGGCAGTACTGAAACCTGGCATTC