Contig 001086:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034K09+                                 TAAGTTACCTCTGATTGAGCTGGAAGCAGAGACAGAA
                      ____________________________________________________________
consensus                                    TAAGTTACCTCTGATTGAGCTGGAAGCAGAGACAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034K09+          AAAGAAATTGAATTGAGATTGCTGCCAAAACTGGATATGCTTAGGGTGATAGACAAGAAG
rJMFF016D20+          AAAGAAATTGAATTGAGATTGCTGCCAAAACTGGATATGCTTAGGGTGATAGACAAGAAG
                      ____________________________________________________________
consensus             AAAGAAATTGAATTGAGATTGCTGCCAAAACTGGATATGCTTAGGGTGATAGACAAGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034K09+          GATAGAGGAACTGTTACAATTAAGGTGTTGTACCATGAATTTAACAAGGAAGAGCAGCAA
rJMFF016D20+          GATAGAGGAACTGTTACAATTAAGGTGTTGTACCATGAATTTAACAAGGAAGAGCAGCAA
                      ____________________________________________________________
consensus             GATAGAGGAACTGTTACAATTAAGGTGTTGTACCATGAATTTAACAAGGAAGAGCAGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034K09+          GCTGCTCTGGAGGAAGAGAAGAGGATCCTAGAAGAAAGAAAGAAGCTGAAGGAGGCTGGT
rJMFF016D20+          GCTGCTCTGGAGGAAGAGAAGAGGATCCTAGAAGAAAGAAAGAAGCTGAAGGAGGCTGGT
                      ____________________________________________________________
consensus             GCTGCTCTGGAGGAAGAGAAGAGGATCCTAGAAGAAAGAAAGAAGCTGAAGGAGGCTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034K09+          ATCATCGGGAGCACGATGGATGCTCTCGATGGGGCAGCATCTCTTGTCGGTTCCGGTGTT
rJMFF016D20+          ATCATCGGGAGCACGATGGATGCTCTCGATGGGGCAGCATCTCTTGTCGGTTCCGGTGTT
                      ____________________________________________________________
consensus             ATCATCGGGAGCACGATGGATGCTCTCGATGGGGCAGCATCTCTTGTCGGTTCCGGTGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034K09+          GGTATGGTGGGAACTGGCATTGGTGCAGGAGTGGGGCTCGTGGGAACCGGTGTTGGTGCA
rJMFF016D20+          GGTATGGTGGGAACTGGCATTGGTGCAGGAGTGGGGCTCGTGGGAACCGGTGTTGGTGCA
                      ____________________________________________________________
consensus             GGTATGGTGGGAACTGGCATTGGTGCAGGAGTGGGGCTCGTGGGAACCGGTGTTGGTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034K09+          GGAGTGGGGCTCGTGGGAACCGGTGTTGGTGCAGGGGTGGGACTCGTGGGAAGTGGCATA
rJMFF016D20+          GGAGTGGGGCTCGTGGGAACCGGTGTTGGTGCAGGGGTGGGACTCGTGGGAAGTGGCATA
                      ____________________________________________________________
consensus             GGAGTGGGGCTCGTGGGAACCGGTGTTGGTGCAGGGGTGGGACTCGTGGGAAGTGGCATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034K09+          GGTGCAGTTGGAAGCGGGCTAAGCAAAGCTGGAAAGTTTGTTGGTAGGACCTTTACTAGT
rJMFF016D20+          GGTGCAGTTGGAAGCGGGCTAAGCAAAGCTGGAAAGTTTGTTGGTAGGACCTTTACTAGT
                      ____________________________________________________________
consensus             GGTGCAGTTGGAAGCGGGCTAAGCAAAGCTGGAAAGTTTGTTGGTAGGACCTTTACTAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034K09+          TCTAGCAACCCCAAGAGCCAACAGGGTGACTCCTCCGCCCCTGCTCCGGCCCCGGCCCCC
rJMFF016D20+          TCTAGCAACCCCAAGAGCCAACAGGGTGACTCCTCCGCCCCTGCTCCGGCCCCGGCCCCC
                      ____________________________________________________________
consensus             TCTAGCAACCCCAAGAGCCAACAGGGTGACTCCTCCGCCCCTGCTCCGGCCCCGGCCCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034K09+          GCCCCCGCCCCAAGCCCTGAAGAAGACAGTGGTGCTAAGCCACTCTAGGTTTGCGCATAA
rJMFF016D20+          GCCCCCGCCCCAAGCCCTGAAGAAGACAGTGGTGCTAAGCCACTCTAGGTTTGCGCATAA
                      ____________________________________________________________
consensus             GCCCCCGCCCCAAGCCCTGAAGAAGACAGTGGTGCTAAGCCACTCTAGGTTTGCGCATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034K09+          ACTCACTCACTCTTATCTGTATCCCGCCATTAATTGCCTGTGTATTTAGAGTTTGTTGAT
rJMFF016D20+          ACTCACTCACTCTTATCTGTATCCCGCCATTAATTGCCTGTGTATTTAGAGTTTGTTGAT
                      ____________________________________________________________
consensus             ACTCACTCACTCTTATCTGTATCCCGCCATTAATTGCCTGTGTATTTAGAGTTTGTTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034K09+          TATAGCCTACTTTTAGATTGGATTTCGTTTAAAGTTTTACTGTGTAGCTGGTTTGTGAGT
rJMFF016D20+          TATAGCCTACTTTTAGATTGGATTTCGTTTAAAGTTTTACTGTGTA-CTGGTTTGTGAGT
                      ____________________________________________________________
consensus             TATAGCCTACTTTTAGATTGGATTTCGTTTAAAGTTTTACTGTGTAGCTGGTTTGTGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF034K09+          TGAAACAT                                                    
rJMFF016D20+          TGAAACATTCACTGTTCATATTTAGTAAAATGCCCTACTGCAGTAAAATTTAGTCACCCT
                      ____________________________________________________________
consensus             TGAAACATTCACTGTTCATATTTAGTAAAATGCCCTACTGCAGTAAAATTTAGTCACCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF016D20+          AAGATGGCACAGATTTGTTTTCTGAACTCCTTGTAAAAATTCACCTAAGATAAAAAGTCA
                      ____________________________________________________________
consensus             AAGATGGCACAGATTTGTTTTCTGAACTCCTTGTAAAAATTCACCTAAGATAAAAAGTCA