Contig 001085:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016B11Sequence508003554 (4)ref|XP_009799957.1|1e-50PREDICTED: cationic amino acid transporter 7, chloroplastic-like [Nicotiana syl751001085 (4)ref|XP_009799957.1|2e-44PREDICTED: cationic amino acid transporter 7, chloroplastic-like [Nicotiana syl
JMSF007A06Sequence259003554 (4)ref|XP_009591737.1|3e-11PREDICTED: cationic amino acid transporter 7, chloroplastic-like [Nicotiana tom776001085 (4)ref|XP_004250472.1|2e-148PREDICTED: cationic amino acid transporter 7, chloroplastic [Solanum lycopersic
JMSF017F13Sequence561003554 (4)ref|XP_009799957.1|2e-62PREDICTED: cationic amino acid transporter 7, chloroplastic-like [Nicotiana syl725001085 (4)ref|XP_004250472.1|3e-117PREDICTED: cationic amino acid transporter 7, chloroplastic [Solanum lycopersic
JMSF021M06Sequence661003554 (4)ref|XP_009799957.1|4e-78PREDICTED: cationic amino acid transporter 7, chloroplastic-like [Nicotiana syl664001085 (4)ref|XP_004250472.1|6e-102PREDICTED: cationic amino acid transporter 7, chloroplastic [Solanum lycopersic

Alignment

This contig is upended


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rJMSF007A06+                           TCAGCGAGGGGTCGCGAGGGTGGAGATGGGTGTCCAACGTCAT
                      ____________________________________________________________
consensus                              TCAGCGAGGGGTCGCGAGGGTGGAGATGGGTGTCCAACGTCAT
 
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rJMSF007A06+          AGGGGCGGGGGCCAGCTTCGGGATACTCACATCACTGTTGGTGGCGATGCTGGGGCAGGC
                      ____________________________________________________________
consensus             AGGGGCGGGGGCCAGCTTCGGGATACTCACATCACTGTTGGTGGCGATGCTGGGGCAGGC
 
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rJMSF007A06+          TCGGTACATGTGTGTGATCGGACGGTCAGGAGTGGTCCCCAACTGGTTCGCCAAGGTTCA
rJMSF017F13+                                                   ACTGGTTCGCCAAGGTTCA
                      ____________________________________________________________
consensus             TCGGTACATGTGTGTGATCGGACGGTCAGGAGTGGTCCCCAACTGGTTCGCCAAGGTTCA
 
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rJMSF007A06+          TCCTAGGACGTCCACGCCCGTCAACGCTTCCGTCTTCCTCGGGATCTTCACTGCAGCCAT
rJMSF017F13+          TCCTAGGACGTCCACGCCCGTCAACGCTTCCGTCTTCCTCGGGATCTTCACTGCAGCCAT
rJMSF021M06+                                                    GATCTTCACTGCAGCCAT
                      ____________________________________________________________
consensus             TCCTAGGACGTCCACGCCCGTCAACGCTTCCGTCTTCCTCGGGATCTTCACTGCAGCCAT
 
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rJMSF007A06+          TGCGCTTTTCACTGATTTACAAATCCTCTTGAACCTGGTGACAATCGGCACCCTCTTCGT
rJMSF017F13+          TGCGCTTTTCACTGATTTACAAATCCTCTTGAACCTGGTGACAATCGGCACCCTCTTCGT
rJMSF021M06+          TGCGCTTTTCACTGATTTACAAATCCTCTTGAACCTGGTGACAATCGGCACCCTCTTCGT
                      ____________________________________________________________
consensus             TGCGCTTTTCACTGATTTACAAATCCTCTTGAACCTGGTGACAATCGGCACCCTCTTCGT
 
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rJMSF007A06+          GTTCTACATGGTCGCAAATGCGGTGATCTACAAGCGCTATGTCACGGTGGGATCAACCAA
rJMSF017F13+          GTTCTACATGGTCGCAAATGCGGTGATCTACAAGCGCTATGTCACGGTGGGATCAACCAA
rJMSF021M06+          GTTCTACATGGTCGCAAATGCGGTGATCTACAAGCGCTATGTCACGGTGGGATCAACCAA
                      ____________________________________________________________
consensus             GTTCTACATGGTCGCAAATGCGGTGATCTACAAGCGCTATGTCACGGTGGGATCAACCAA
 
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rJMSF007A06+          TCCGTGGCCAACCCTGTCTTACCTCTTCTGCTTCACCCTCACTTCGGTCTGGTTCACGCT
rJMSF017F13+          TCCGTGGCCAACCCTGTCTTACCTCTTCTGCTTCACCCTCACTTCGGTCTTGTTCACGCT
rJMSF021M06+          TCCGTGGCCAACCCTGTCTTACCTCTTCTGCTTCACCCTCACTTCGGTCTTGTTCACGCT
rJMFF016B11+                                       GCTTCACCCTCACTTCGGTCTTGTTCACGCT
                      ____________________________________________________________
consensus             TCCGTGGCCAACCCTGTCTTACCTCTTCTGCTTCACCCTCACTTCGGTCTTGTTCACGCT
 
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rJMSF007A06+          GCTGTGGCACTGCGCACCGCCAGGCAAGGCGAAGGCCTTGGTGCTGGGCGGTTGCACCCT
rJMSF017F13+          GCTGTGGCACTGCGCACCGCCAGGCAAGGCGAAGGCCTTGGTGCTGGGCGGTTGCACCCT
rJMSF021M06+          GCTGTGGCACTGCGCACCGCCAGGCAAGGCGAAGGCCTTGGTGCTGGGCGGTTGCACCCT
rJMFF016B11+          GCTGTGGCACTGCGCACCGCCAGGCAAGGCGAAGGCCTTGGTGCTGGGCGGTTGCACCCT
                      ____________________________________________________________
consensus             GCTGTGGCACTGCGCACCGCCAGGCAAGGCGAAGGCCTTGGTGCTGGGCGGTTGCACCCT
 
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rJMSF007A06+          CATCGCCATCGCCA-TTCTCCAGCTATTCCAGTATATGGTGCCCCAGGCGAAGAAACCCG
rJMSF017F13+          CATCGCCATCGCCA-TTCTCCAGCTATTCCAGTATATGGTGCCCCAGGCGAAGAAACCCG
rJMSF021M06+          CATCGCCATCGCCA-TTCTCCAGCTATTCCAGTATATGGTGCCCCAGGCGAAGAAACCCG
rJMFF016B11+          CATCGCCATCGCCATTTCTCCAGCTATTCCAGTATATGGTGCCCCAGGCGAAGAAACCCG
                      ____________________________________________________________
consensus             CATCGCCATCGCCA-TTCTCCAGCTATTCCAGTATATGGTGCCCCAGGCGAAGAAACCCG
 
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rJMSF007A06+          AGCTGTGGGGTGTCCCATTGATGCCATGGATTCCATCCATGTCCATCTTCCTCAATATAT
rJMSF017F13+          AGCTGTGGGGTGTCCCATTGATGCCATGGATTCCATCCATGTCCATCTTCCTCAATATAT
rJMSF021M06+          AGCTGTGGGGTGTCCCATTGATGCCATGGATTCCATCCATGTCCATCTTCCTCAATATAT
rJMFF016B11+          AGCTGTGGGGTGTCCCATTGATGCCATGGATTTCATCCATGTCCATCTTCCTCAATATAT
                      ____________________________________________________________
consensus             AGCTGTGGGGTGTCCCATTGATGCCATGGATTCCATCCATGTCCATCTTCCTCAATATAT
 
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rJMSF007A06+          TCCTGTTGGGTTCCCTTGACCGGCCATCCTATATCCGGTTCGGATTCTTTTCGGGCCTTG
rJMSF017F13+          TCCTGTTGGGTTCCCTTGACCGGCCATCCTATATCCGGTTCGGATTCTTTTCGGGCCTTG
rJMSF021M06+          TCCTGTTGGGTTCCCTTGACCGGCCATCCTATATCCGGTTCGGATTCTTTTCGGGCCTTG
rJMFF016B11+          TCCTGTTGGGTTCCCTTGACCGGCCATCCTATATCCGGTTCGGATTCTTTTCGGGCCTTG
                      ____________________________________________________________
consensus             TCCTGTTGGGTTCCCTTGACCGGCCATCCTATATCCGGTTCGGATTCTTTTCGGGCCTTG
 
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rJMSF007A06+          CAGTGATTGTGTATGTGCTATACAGTGTCCATGCTAGCTTTGATGCTGGGGAACAAAAAA
rJMSF017F13+          CAGTGATTGTGTATGTGCTATACAGTGTCCATGCTAGCTTTGATGCTGGGGAACAAAAAA
rJMSF021M06+          CAGTGATTGTGTATGTGCTATACAGTGTCCATGCTAGCTTTGATGCTGGGGAACAAAAAA
rJMFF016B11+          CAGTGATTGTGTATGTGCTATACAGTGTCCATGCTAGCTTTGATGCTGGGGAACAAAAAA
                      ____________________________________________________________
consensus             CAGTGATTGTGTATGTGCTATACAGTGTCCATGCTAGCTTTGATGCTGGGGAACAAAAAA
 
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rJMSF007A06+          CACTTGGTCAAGAGAATATTGAGATGGGGAAGGAATATAATGTACCCCGGGACCATTCTC
rJMSF017F13+          CACTTGGTCAAGAGAATATTGAGATGGGGAAGGAATATAATGTACCCCGGGACCATTCTC
rJMSF021M06+          CACTTGGTCAAGAGAATATTGAGATGGGGAAGGAATATAATGTACCCCGGGACCATTCTC
rJMFF016B11+          CACTTGGTCAAGAGAATATTGAGATGGGGAAGGAATATAATGTACCCCGGGACCATTCTC
                      ____________________________________________________________
consensus             CACTTGGTCAAGAGAATATTGAGATGGGGAAGGAATATAATGTACCCCGGGACCATTCTC
 
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rJMSF007A06+          TCAAAGTATAAATG                                              
rJMSF017F13+          TCAAAGTATAAATGTGTAATGGCTCATATATTTTAACCTTTTTCTTTTGCTTAGCTTCTT
rJMSF021M06+          TCAAAGTATAAATGTGTAATGGCTCATATATTTTAACCTTTTTCTTTTGCTTAGCTTCTT
rJMFF016B11+          TCAAAGTATAAATGTGTAATGGCTCATATATTTTAACCTTTTTCTTTTGCTTAGCTTCTT
                      ____________________________________________________________
consensus             TCAAAGTATAAATGTGTAATGGCTCATATATTTTAACCTTTTTCTTTTGCTTAGCTTCTT
 
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rJMSF017F13+          ACATGGAATAGAGAAGTCCAGTGGGATAGGCTGCAATTTTGCAGCAC             
rJMSF021M06+          ACATGGAATAGAGAAGTCCAGTGGGATAGGCTGCAATTTTGCAGCAC             
rJMFF016B11+          ACATGGAATAGAGAAGTCCAGTGGGATAGGCTGCAATTTTGCAGCACTTGGCAACTTGTA
                      ____________________________________________________________
consensus             ACATGGAATAGAGAAGTCCAGTGGGATAGGCTGCAATTTTGCAGCACTTGGCAACTTGTA
 
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rJMFF016B11+          TAGTTTGATTCCCAGTATTATTATTGGACTTCCGTTCAACATCTCCAAAATGCTAATTTT
                      ____________________________________________________________
consensus             TAGTTTGATTCCCAGTATTATTATTGGACTTCCGTTCAACATCTCCAAAATGCTAATTTT
 
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rJMFF016B11+          AAGTCAACTATTGTTGGGGTTAGCTAGTTTCTTTCATACATTTTAGCTAATTTTAATGGG
                      ____________________________________________________________
consensus             AAGTCAACTATTGTTGGGGTTAGCTAGTTTCTTTCATACATTTTAGCTAATTTTAATGGG
 
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rJMFF016B11+          ATCGAGAAGATGATAACAGGTCACTTTGTTTTATGAAATTTCGTTAAAATCTTGCTGGCA
                      ____________________________________________________________
consensus             ATCGAGAAGATGATAACAGGTCACTTTGTTTTATGAAATTTCGTTAAAATCTTGCTGGCA
 
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rJMFF016B11+          GGTTGTCGGAACTCGAATGACCTATGAATCAATTTTTGGGCTTCATTTAACAAAATAAAT
                      ____________________________________________________________
consensus             GGTTGTCGGAACTCGAATGACCTATGAATCAATTTTTGGGCTTCATTTAACAAAATAAAT