| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF016A14 | Sequence | 549 | 004966 (4) | ref|XP_009779974.1| | 5e-76 | PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Nico | 792 | 001084 (3) | ref|XP_009779974.1| | 9e-81 | PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Nico |
| JMFF037N05 | Sequence | 574 | 004966 (4) | ref|XP_009779975.1| | 5e-79 | PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X2 [Nico | 773 | 001084 (3) | ref|XP_009779974.1| | 3e-64 | PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Nico |
| JMSF007C06 | Sequence | 353 | 004966 (4) | ref|XP_009779975.1| | 2e-38 | PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X2 [Nico | 776 | 001084 (3) | ref|XP_009779974.1| | 7e-79 | PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X1 [Nico |
This contig is upended
. : . : . : . : . : . :
rJMFF016A14+ GTTGCCCTTGCGG
____________________________________________________________
consensus GTTGCCCTTGCGG
. : . : . : . : . : . :
rJMSF007C06+ TTTATCAAAGAACAAGATAAAGGATTGGCC-TAGTTCAATCTTGATCTCACTT
rJMFF037N05+ TTTATCAAAGACCAAGATAAAGGATTGGCCTTAGTTCAATCTTGATCTCACTT
rJMFF016A14+ CTTTAATTTTATCAAAGANCAAGATAAAGGATTGGCC-TAGTTCAATCTTGATCTCACTT
____________________________________________________________
consensus CTTTAATTTTATCAAAGACCAAGATAAAGGATTGGCC-TAGTTCAATCTTGATCTCACTT
. : . : . : . : . : . :
rJMSF007C06+ TCTAGACTTACTTGTTTGAGACTCGACAACAATCCTCTAAGAAAGATACCATCAGATGGC
rJMFF037N05+ TCTAGACTTACTTGTTTGAGACTCGACAACAATCCTCTAAGAAAGATACCATCAGATGGC
rJMFF016A14+ TCTAGACTTACTTGTTTGAGACTCGACAACAATCCTCTAAGAAAGATACCATCAGATGGC
____________________________________________________________
consensus TCTAGACTTACTTGTTTGAGACTCGACAACAATCCTCTAAGAAAGATACCATCAGATGGC
. : . : . : . : . : . :
rJMSF007C06+ TTTCAAGCTGTGGCCAAGCTTCAGATTCTGGACCTAACCGGCAATATAGGTTCTTTGCCA
rJMFF037N05+ TTTCAAGCTGTGGCCAAGCTTCAGATTCTGGACCTAACCGGCAATATAGGTTCTTTGCCA
rJMFF016A14+ TTTCAAGCTGTGGCCAAGCTTCAGATTCTGGACCTAACCGGCAATATAGGTTCTTTGCCA
____________________________________________________________
consensus TTTCAAGCTGTGGCCAAGCTTCAGATTCTGGACCTAACCGGCAATATAGGTTCTTTGCCA
. : . : . : . : . : . :
rJMSF007C06+ GAACATCCAGCATTTTCTTGCATGCCAGACTTGCAGGAGCTTTATTTGAGAAGGATGCAG
rJMFF037N05+ GAACATCCAGCATTTTCTTGCATGCCAGACTTGCAGGAGCTTTATTTGAGAAGGATGCAG
rJMFF016A14+ GAACATCCAGCATTTTCTTGCATGCCAGACTTGCAGGAGCTTTATTTGAGAAGGATGCAG
____________________________________________________________
consensus GAACATCCAGCATTTTCTTGCATGCCAGACTTGCAGGAGCTTTATTTGAGAAGGATGCAG
. : . : . : . : . : . :
rJMSF007C06+ ATATCTTTAGTCCCATCTGACATAATGAGCTTGAAGCATTTAAGAATTCTTGATTTGAGC
rJMFF037N05+ ATATCTTTAGTCCCATCTGACATAATGAGCTTGAAGCATTTAAGAATTCTTGATTTGAGC
rJMFF016A14+ ATATCTTTAGTCCCATCTGACATAATGAGCTTGAAGCATTTAAGAATTCTTGATTTGAGC
____________________________________________________________
consensus ATATCTTTAGTCCCATCTGACATAATGAGCTTGAAGCATTTAAGAATTCTTGATTTGAGC
. : . : . : . : . : . :
rJMSF007C06+ CAAAATTCCCTTCAATCAATTCCTGAGGGAATGAAAGATTTGAATTCTCTTACGGAGCTG
rJMFF037N05+ CAAAATTCCCTTCAATCAATTCCTGAGGGAATGAAAGATTTGAATTCTCTTACGGAGCTG
rJMFF016A14+ CAAAATTCCCTTCAATCAATTCCTGAGGGAATGAAAGATTTGAATTCTCTTACGGAGCTG
____________________________________________________________
consensus CAAAATTCCCTTCAATCAATTCCTGAGGGAATGAAAGATTTGAATTCTCTTACGGAGCTG
. : . : . : . : . : . :
rJMSF007C06+ GACCTTTCAGACAATAATATTTCTTCACTTCCACCCGAACTAGGTTTACTGGAACCCAGC
rJMFF037N05+ GACCTTTCAGACAATAATATTTCTTCACTTCCACCCGAACTAGGTTTACTGGAACCCAGC
rJMFF016A14+ GACCTTTCAGACAATAATATTTCTTCACTTCCACCCGAACTAGGTTTACTGGAACCCAGC
____________________________________________________________
consensus GACCTTTCAGACAATAATATTTCTTCACTTCCACCCGAACTAGGTTTACTGGAACCCAGC
. : . : . : . : . : . :
rJMSF007C06+ CTGCAAGTGTTAAAAGTTGAGGGAAACCCACTGCGGAGCATCCGAAGGACAATTTTGGAT
rJMFF037N05+ CTGCAAGTGTTAAAAGTTGAGGGAAACCCACTGCGGAGCATCCGAAGGACAATTTTGGAT
rJMFF016A14+ CTGCAAGTGTTAAAAGTTGAGGGAAACCCACTGCGGAGCATCCGAAGGACAATTTTGGAT
____________________________________________________________
consensus CTGCAAGTGTTAAAAGTTGAGGGAAACCCACTGCGGAGCATCCGAAGGACAATTTTGGAT
. : . : . : . : . : . :
rJMSF007C06+ AGAGGAACAAAAGCTATTTTGAAATACTTAAAGGACAAAATTATTGAGCATTAACACCTT
rJMFF037N05+ AGAGGAACAAAAGCTATTTTGAAATACTTAAAGGACAAAATTATTGAGCATTAACACCTT
rJMFF016A14+ AGAGGAACAAAAGCTATTTTGAAATACTTAAAGGACAAAATTATTGAGCATTAACACCTT
____________________________________________________________
consensus AGAGGAACAAAAGCTATTTTGAAATACTTAAAGGACAAAATTATTGAGCATTAACACCTT
. : . : . : . : . : . :
rJMSF007C06+ TAATCTGGTCTGAGTTCTTTTTGGAGCTTTACTTTTTGGGTCAATGTGAAAGTAAAAATT
rJMFF037N05+ TAATCTGGTCTGAGTTCTTTTTGGAGCTTTACTTTTTGGGTCAATGTGAAAGTAAAAATT
rJMFF016A14+ TAATCTGGTCTGAGTTCTTTTTGGAGCTTTACTTTTTGGGTCAATGTGAAAGTAAAAATT
____________________________________________________________
consensus TAATCTGGTCTGAGTTCTTTTTGGAGCTTTACTTTTTGGGTCAATGTGAAAGTAAAAATT
. : . : . : . : . : . :
rJMSF007C06+ GTATCTTTAGCCTTGTATCTTTTATGACCAAGTTTCATATCAAAGACCATCTGCAACTTC
rJMFF037N05+ GTATCTTTAGCCTTGTATCTTTTATGACCAAGTTTCATATCAAAGACCATCTGCAACTTC
rJMFF016A14+ GTATCTTTAGCCTTGTATCTTTTATGACCAAGTTTCATATCAAAGACCATCTGCAACTTC
____________________________________________________________
consensus GTATCTTTAGCCTTGTATCTTTTATGACCAAGTTTCATATCAAAGACCATCTGCAACTTC
. : . : . : . : . : . :
rJMSF007C06+ CTTTTAAACTATTGATGTATCTTTCCTGTGTGATTGTTTGGGAAAATAGATAACTATTAA
rJMFF037N05+ CTTTTAAACTATTGATGTATCTTTCCTGTGTGATTGTTTGGGAAAATAGATAACTATTAA
rJMFF016A14+ CTTTTAAACTATTGATGTATCTTTCCTGTGTGATTGTTTGGGAAAATAGATAACTATTAA
____________________________________________________________
consensus CTTTTAAACTATTGATGTATCTTTCCTGTGTGATTGTTTGGGAAAATAGATAACTATTAA
. : . : . : . : . : . :
rJMSF007C06+ TGTTGTTGTAATTGGTGTACTATGTACTGAAGTTCAATATGAGAATAT
rJMFF037N05+ TGTTGTTGTAATTGGTGTACTATGTACTGAAGTTCAATATGAGAATATTGCTGATGCCTT
rJMFF016A14+ TGTTGTTGTAATTGGTGTACTATGTACTGAAGTTCAATATGAGAATATTGCTGATGCCTT
____________________________________________________________
consensus TGTTGTTGTAATTGGTGTACTATGTACTGAAGTTCAATATGAGAATATTGCTGATGCCTT