| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014N11 | Sequence | 541 | 007337 (7) | emb|CDO97271.1| | 1e-30 | unnamed protein product [Coffea canephora] | 758 | 001082 (7) | ref|XP_011088066.1| | 9e-72 | PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, ch |
| JMFF034E04 | Sequence | 525 | 007337 (7) | emb|CDO97271.1| | 3e-38 | unnamed protein product [Coffea canephora] | 707 | 001082 (7) | ref|XP_011088066.1| | 1e-66 | PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, ch |
| JMSF004L14 | Sequence | 402 | 007746 (5) | ref|XP_006471911.1| | 3e-18 | PREDICTED: putative phytosulfokines 6-like isoform X1 [Citrus sinensis] | 277 | 001082 (7) | |||
| JMSF004N16 | Sequence | 237 | 007337 (7) | 314 | 001082 (7) | ||||||
| JMSF005G10 | Sequence | 392 | 001082 (7) | ref|XP_011088066.1| | 6e-09 | PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, ch | |||||
| JMSF008D08 | Sequence | 304 | 007337 (7) | 794 | 001082 (7) | ref|XP_009759258.1| | 3e-75 | PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, ch | |||
| JMSF025L19 | Sequence | 361 | 011868 (7) | 763 | 001082 (7) | ref|XP_009759258.1| | 1e-89 | PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, ch | |||
This contig is upended
. : . : . : . : . : . :
rJMSF025L19+ CAGCCGTTAGTGAGCTTCTTGTTGCTCAATTTTTGTGGTTGGATTATGA
rJMSF008D08+ TACCAGCCGTTAGTGAGCTTCTTGTTGCTCAATTTTTGTGGTTGGATTATGA
____________________________________________________________
consensus TACCAGCCGTTAGTGAGCTTCTTGTTGCTCAATTTTTGTGGTTGGATTATGA
. : . : . : . : . : . :
rJMSF025L19+ TAATCC-TTCAAAGCCTATATATCTCTACATAAATTCACATGGCACCCAGAATGAGAGGA
rJMSF008D08+ TAATCCTTTCAAAGCCTATATATCTCTACATAAATTCACATGGCACCCAGAATGAGAGGA
rJMFF034E04+ CAGAATGAGAGGA
rJMFF014N11+ TCTCTACATAAATTCACATGGCACCCAGAATGAGAGGA
____________________________________________________________
consensus TAATCCTTTCAAAGCCTATATATCTCTACATAAATTCACATGGCACCCAGAATGAGAGGA
. : . : . : . : . : . :
rJMSF025L19+ GGGAGTTGGTTGGTTCTGAAACAGATGCATACGCCATTGCTGATGCCATGCGTTTAAGCA
rJMSF008D08+ GGGAGTTGGTTGGTTCTGAAACAGATGCATACGCCATTGCTGATGCCATGCGTTTAAGCA
rJMFF034E04+ GGGAGTTGGTTGGTTCTGAAACAGATGCATACGCCATTGCTGATGCCATGCGTTTAAGCA
rJMFF014N11+ GGGAGTTGGTTGGTTCTGAAACAGATGCATACGCCATTGCTGATGCCATGCGTTTAAGCA
____________________________________________________________
consensus GGGAGTTGGTTGGTTCTGAAACAGATGCATACGCCATTGCTGATGCCATGCGTTTAAGCA
. : . : . : . : . : . :
rJMSF025L19+ AACCAGATGTTTGTACAGTGAATGTTGGTAAGGCATATGGTCAAGCAGGAATGCTTCTGT
rJMSF008D08+ AACCAGATGTTTGTACAGTGAATGTTGGTAAGGCATATGGTCAAGCAGGAATGCTTCTGT
rJMFF034E04+ AACCAGATGTTTGTACAGTGAATGTTGGTAAGGCATATGGTCAAGCAGGAATGCTTCTGT
rJMFF014N11+ AACCAGATGTTTGTACAGTGAATGTTGGTAAGGCATATGGTCAAGCAGGAATGCTTCTGT
____________________________________________________________
consensus AACCAGATGTTTGTACAGTGAATGTTGGTAAGGCATATGGTCAAGCAGGAATGCTTCTGT
. : . : . : . : . : . :
rJMSF025L19+ CACTTGGGAAGAAAGGCTTCCGAGCTTTACAAGCAAGTGCATCCACAAAATTATATCTAC
rJMSF008D08+ CACTTGGGAAGAAAGGCTTCCGAGCTTTACAAGCAAGTGCATCCACAAAATTATATCTAC
rJMFF034E04+ CACTTGGGAAGAAAGGCTTCCGAGCTTTACAAGCAAGTGCATCCACAAAATTATATCTAC
rJMFF014N11+ CACTTGGGAAGAAAGGCTTCCGAGCTTTACAAGCAAGTGCATCCACAAAATTATATCTAC
____________________________________________________________
consensus CACTTGGGAAGAAAGGCTTCCGAGCTTTACAAGCAAGTGCATCCACAAAATTATATCTAC
. : . : . : . : . : . :
rJMSF025L19+ CTGATGTTTACAAATCAAGTGGACCTGTGACTGAAATGTGGATTAAGGCAAAAGAGCTTG
rJMSF008D08+ CTGATGTTTACAAATCAAGTGGACCTGTGACTGAAATGTGGATTAAGGCAAAAGAGCTTG
rJMFF034E04+ CTGATGTTTACAAATCAAGTGGACCTGTGACTGAAATGTGGATTAAGGCAAAAGAGCTTG
rJMFF014N11+ CTGATGTTTACAAATCAAGTGGACCTGTGACTGAAATGTGGATTAAGGCAAAAGAGCTTG
____________________________________________________________
consensus CTGATGTTTACAAATCAAGTGGACCTGTGACTGAAATGTGGATTAAGGCAAAAGAGCTTG
. : . : . : . : . : . :
rJMSF025L19+ ATGCAAACAAAGACTATTACCTCGAGCTATTGTCCAAAGGGATTGGTAAACCAAAGGAAG
rJMSF008D08+ ATGCAAACAAGGACTATTACCTCGAGCTATTGTCCAAAGGGATTGGTAAACCAAAGGAAG
rJMFF034E04+ ATGCAAACAAAGACTATTACCTCGAGCTATTGTCCAAAGGGATTGGTAAACCAAAGGAAG
rJMFF014N11+ ATGCAAACAAAGACTATTACCTCGAGCTATTGTCCAAAGGGATTGGTAAACCAAAGGAAG
____________________________________________________________
consensus ATGCAAACAAAGACTATTACCTCGAGCTATTGTCCAAAGGGATTGGTAAACCAAAGGAAG
. : . : . : . : . : . :
rJMSF025L19+ AAATTGAGAGAGATATTCAACGTCCTCAATATTTCACAGTACAAGAGGCCATTGACTATG
rJMSF008D08+ AAATTGAGAGAGATATTCAACGTCCTCAATATTTCACAGTACAAGAGGCCATTGACTATG
rJMFF034E04+ AAATTGAGAGAGATATTCAACGTCCTCAATATTTCACAGTACAAGAGGCCATTGACTATG
rJMSF005G10+ TTGAGAGAGATNTTCAACGTCCTCAATATTTCACAGTACAAGAGGCCATCGACTATG
rJMFF014N11+ AAATTGAGAGAGATATTCAACGTCCTCAATATTTCACAGTACAAGAGGCCATTGACTATG
____________________________________________________________
consensus AAATTGAGAGAGATATTCAACGTCCTCAATATTTCACAGTACAAGAGGCCATTGACTATG
. : . : . : . : . : . :
rJMSF025L19+ GCATTGCAGACAAGATTATTGATCCAAAAGATTCTATATTTGAGAAGCGGGATTACGAAG
rJMSF008D08+ GCATTGCAGACAAGATTATTGATCCAAAAGATTCTATATTTGAGAAGCGGGATTACGAAG
rJMSF004L14+ GAAG
rJMFF034E04+ GCATTGCAGACAAGATTATTGATCCAAAAGATTCTATATTTGAGAAGCGGGATTACGAAG
rJMSF005G10+ GCATTGCAGACAAGATTATTGATCCAAAAGATTCTATATTTGNGAAGCGGGATTACGAAG
rJMSF004N16+ CAAGATTANTGATCCAAAAGATTCTATA-TTGAGAAGCGGGATTACGAAG
rJMFF014N11+ GCATTGCAGACAAGATTATTGATCCAAAAGATTCTATATTTGAGAAGCGGGATTACGAAG
____________________________________________________________
consensus GCATTGCAGACAAGATTATTGATCCAAAAGATTCTATATTTGAGAAGCGGGATTACGAAG
. : . : . : . : . : . :
rJMSF025L19+ GCATGCTTGCCCAATCAAGAGCAATGAGGAGAGCAGCTGGATCAGGTGCACAAGCGGCTG
rJMSF008D08+ GCATGCTTGCCCAATCAAGAGCAATGAGGAGAGCAGCTGGATCAGGTGCACAAGCGGCTG
rJMSF004L14+ GCATGCTTGCCCAATCAAGAGCAATGAGGAGAGCAGCTGGATCAGGTGCACAAGCGGCTG
rJMFF034E04+ GCATGCTTGCCCAATCAAGAGCAATGAGGAGAGCAGCTGGATCAGGTGCACAAGCGGCTG
rJMSF005G10+ GCATGCTTGCCCANTCAAGAGCAATGAGGAGAGCAGCTGGATCAGGTGCACAAGCGGCTN
rJMSF004N16+ GCATGCTTGCCCAATCAAGAGCAATGAGGAGAGCAGCTGGATCAGGTGCACAAGCGGCTG
rJMFF014N11+ GCATGCTTGCCCAATCAAGAGCAATGAGGAGAGCAGCTGGATCAGGTGCACAAGCGGCTG
____________________________________________________________
consensus GCATGCTTGCCCAATCAAGAGCAATGAGGAGAGCAGCTGGATCAGGTGCACAAGCGGCTG
. : . : . : . : . : . :
rJMSF025L19+ CTGGCTCTGGGTTTAGGTAGGTAACTCATGGTGTCCAAATTTGAAGAATGAAAACTTCTG
rJMSF008D08+ CTGGCTCTGGGTTTAGGTAGGTAACTCATGGTGTCCAAATTTGAAGAATGAAAACTTCTG
rJMSF004L14+ CTGGCTCTGGGTTTAGGTAGGTAACTCATGGTGTCCAAATTTGAAGAATGAAAACTTCTG
rJMFF034E04+ CTGGCTCTGGGTTTAGGTAGGTAACTCATGGTGTCCAAATTTGAAGAATGAAAACTTCTG
rJMSF005G10+ CTGGCTCTGGGTTTAGGTAGGTAACTCATGGTGTCCAAATTTGAAGAATGAAAACTTCTG
rJMSF004N16+ CTGGCTCTGGGTTTAGGTAGGTAACTCATGGTGTCCAAATTTGAAGAATGAAAACTTCTG
rJMFF014N11+ CTGGCTCTGGGTTTAGGTAGGTAACTCATGGTGTCCAAATTTGAAGAATGAAAACTTCTG
____________________________________________________________
consensus CTGGCTCTGGGTTTAGGTAGGTAACTCATGGTGTCCAAATTTGAAGAATGAAAACTTCTG
. : . : . : . : . : . :
rJMSF025L19+ GTTACCTTTGAAATCTGGTCTTTCAAGTATCTGGTGTAGAGGCAGGCACTTTCCAATTGT
rJMSF008D08+ GTTACCTTTGAAATCTGGTCTTTCAAGTATCTGGTGTAGAGGCAGGCACTTTCCAATTGT
rJMSF004L14+ GTTACCTTTGAAATCTGGTCTTTCAAGTATCTGGTGTAGAGGCAGGCACTTTCCAATTGT
rJMFF034E04+ GTTACCTTTGAAATCTGGTCTTTCAAGTATCTGGTGTAGAGGCAGGCACTTTCCAATTGT
rJMSF005G10+ GTTACCTTTGAAATCTGGTCTTTCAAGTATCTGGTGTAGAGGCAGGCACTTTCCAATTGT
rJMSF004N16+ GTTACCTTTGAAATCTGGTCTTTCAAGTATCTGGTGTAGAGGCAGGCACTTTCCAATTGT
rJMFF014N11+ GTTACCTTTGAAATCTGGTCTTTCAAGTATCTGGTGTAGAGGCAGGCACTTTCCAATTGT
____________________________________________________________
consensus GTTACCTTTGAAATCTGGTCTTTCAAGTATCTGGTGTAGAGGCAGGCACTTTCCAATTGT
. : . : . : . : . : . :
rJMSF025L19+ ACTGTGTTAAAATTTCTGTAATCACCAGTTCACAAGTTTAGTAGTGCCATGATAC
rJMSF008D08+ ACTGTGTTAAAATTTCTGTAATCACCAGTTCACAAGTTTAGTAGTGCCATGATACTTATA
rJMSF004L14+ ACTGTGTTAAAATTTCTGTAATCACCAGTTCACAAGTTTAGTAGTGCCATGATACTTATA
rJMFF034E04+ ACTGTGTTAAAATTTCTGTAATCACCAGTTCACAAGTTTAGTAGTGCCATGATACTTATA
rJMSF005G10+ ACTGTGTTACAATTTCTGTAATCACCAGTTCACAAGTTTAGTAGTGCCATGATACTTATA
rJMSF004N16+ ACTGTGTTAAAATTTCTGTAATCACCAGTTCACAAGTTTAGTAGTGCCATGATACTTATA
rJMFF014N11+ ACTGTGTTAAAATTTCTGTAATCACCAGTTCACAAGTTTAGTAGTGCCATGATACTTATA
____________________________________________________________
consensus ACTGTGTTAAAATTTCTGTAATCACCAGTTCACAAGTTTAGTAGTGCCATGATACTTATA
. : . : . : . : . : . :
rJMSF008D08+ CAAGAT
rJMSF004L14+ CAAGATTGTACTTAAAAAAAGTATTGTTAATTG
rJMFF034E04+ CAAGATTGTACTTAAAAAAAGTATTGTTAATTG
rJMSF005G10+ CAAGATTGTACTTAAAAAAAGTATTGTTAATTG
rJMSF004N16+ CAAGATTGTACTTAAAAAAAGTATT
rJMFF014N11+ CAAGATTGTACTTAAAAAAAGTATTGTTAATTGATGTCCACAGCTACTTTGCTTTGCTAT
____________________________________________________________
consensus CAAGATTGTACTTAAAAAAAGTATTGTTAATTGATGTCCACAGCTACTTTGCTTTGCTAT