Contig 001081:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004A18Sequence549008720 (3)ref|XP_009778085.1|6e-87PREDICTED: probable alpha-amylase 2 [Nicotiana sylvestris] ref|XP_009778086.1| P757001081 (4)ref|XP_002301935.2|8e-115hypothetical protein POPTR_0002s01570g [Populus trichocarpa] gb|EEE81208.2| hypo
JMFF011E13Sequence676001081 (4)ref|XP_002301935.2|6e-94hypothetical protein POPTR_0002s01570g [Populus trichocarpa] gb|EEE81208.2| hypo
JMFF014H18Sequence541008720 (3)ref|XP_009778085.1|7e-85PREDICTED: probable alpha-amylase 2 [Nicotiana sylvestris] ref|XP_009778086.1| P778001081 (4)ref|XP_002301935.2|2e-91hypothetical protein POPTR_0002s01570g [Populus trichocarpa] gb|EEE81208.2| hypo
JMSF007N22Sequence277015669748001081 (4)ref|XP_009589242.1|3e-126PREDICTED: probable alpha-amylase 2 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF007N22+                                                GGTGAATATTGGGATACATGCA
                      ____________________________________________________________
consensus                                                   GGTGAATATTGGGATACATGCA
 
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rJMSF007N22+          ATTATAGAGGCACCTATTTGGATTACAACCAAGATAGTCACAGACAAAGGATCATTAACT
                      ____________________________________________________________
consensus             ATTATAGAGGCACCTATTTGGATTACAACCAAGATAGTCACAGACAAAGGATCATTAACT
 
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rJMSF007N22+          GGATTGATGGAACTGGGCAACTTTCAGCTGCATTTGATTTCACAACTAAAGCAATCCTAC
                      ____________________________________________________________
consensus             GGATTGATGGAACTGGGCAACTTTCAGCTGCATTTGATTTCACAACTAAAGCAATCCTAC
 
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rJMSF007N22+          AGGAAGCTGTGAAAGGAGAATTCTGGCGTCTGAGAGACGCTCAAGGGAAGCCTCCAGGAG
rJMFF004A18+          AGGAAGCTGTGAAAGGAGAATTCTGGCGTCTGAGAGACGCTCAAGGGAAGCCTCCAGGAG
rJMFF011E13+          AGGAAGCTGTGAAAGGAGAATTCTGGCGTNTGAGAGACGCTCAAGGGAAGCCTCCAGGAG
rJMFF014H18+          AGGAAGCTGTGAAAGGAGAATTCTGGCGTCTGAGAGACGCTCAAGGGAAGCCTCCAGGAG
                      ____________________________________________________________
consensus             AGGAAGCTGTGAAAGGAGAATTCTGGCGTCTGAGAGACGCTCAAGGGAAGCCTCCAGGAG
 
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rJMSF007N22+          TCATGGGATGGTGGCCTTCAAGGGCTGTCACTTTTATTGATAACCATGACACGGGATCCA
rJMFF004A18+          TCATGGGATGGTGGCCTTCAAGGGCTGTCACTTTTATTGATAACCATGACACGGGATCCA
rJMFF011E13+          TCATGGGATGGTGGCCTTCAAGGGCTGTCACTTTTATTGATAACCATGACACGGGATCCA
rJMFF014H18+          TCATGGGATGGTGGCCTTCAAGGGCTGTCACTTTTATTGATAACCATGACACGGGATCCA
                      ____________________________________________________________
consensus             TCATGGGATGGTGGCCTTCAAGGGCTGTCACTTTTATTGATAACCATGACACGGGATCCA
 
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rJMSF007N22+          CTCAGGCTCACTGGCCTTTCCCTTCCAGTCATATTATGGAGGGCTATGCCTACATACTAA
rJMFF004A18+          CTCAGGCTCACTGGCCTTTCCCTTCCAGTCATATTATGGAGGGCTATGCCTACATACTAA
rJMFF011E13+          CTCAGGCTCACTGGCCTTTCCCTTCCAGTCATATTATGGAGGGCTATGCCTACATACTAA
rJMFF014H18+          CTCAGGCTCACTGGCCTTTCCCTTCCAGTCATATTATGGAGGGCTATGCCTACATACTAA
                      ____________________________________________________________
consensus             CTCAGGCTCACTGGCCTTTCCCTTCCAGTCATATTATGGAGGGCTATGCCTACATACTAA
 
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rJMSF007N22+          CTCATCCAGGGATGCCAGCAGTATTTTACGATCATTTCTATGACTGGGGAAATTCACTTC
rJMFF004A18+          CTCATCCAGGGATGCCAGCAGTATTTTACGATCATTTCTATGACTGGGGAAATTCACTTC
rJMFF011E13+          CTCATCCAGGGATGCCAGCAGTATTTTACGATCATTTNTATGACTGGGGAAATTCACTTC
rJMFF014H18+          CTCATCCAGGGATGCCAGCAGTATTTTACGATCATTTCTATGACTGGGGAAATTCACTTC
                      ____________________________________________________________
consensus             CTCATCCAGGGATGCCAGCAGTATTTTACGATCATTTCTATGACTGGGGAAATTCACTTC
 
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rJMSF007N22+          ATGACCAAATCGTTAGGCTGATTGATATCCGGCGCAATCAAGGCATAAACAGCAGATCAT
rJMFF004A18+          ATGACCAAATCGTTAGGCTGATTGATATCCGGCGCAATCAAGGCATAAACAGCAGATCAT
rJMFF011E13+          ATGACCAAATCGTTAGGNTGATTGATATCCGGCGCAATCAAGGCATAAACAGCAGATCAT
rJMFF014H18+          ATGACCAAATCGTTAGGCTGATTGATATCCGGCGCAATCAAGGCATAAACAGCAGATCAT
                      ____________________________________________________________
consensus             ATGACCAAATCGTTAGGCTGATTGATATCCGGCGCAATCAAGGCATAAACAGCAGATCAT
 
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rJMSF007N22+          CTATAAGAATTCTCGAGGCTCAGCCAAATGTATATGCAGCAATAATTGGAGAAAAGATTT
rJMFF004A18+          CTATAAGAATTCTCGAGGCTCAGCCAAATGTATATGCAGCAATAATTGGAGAAAAGATTT
rJMFF011E13+          CTATAAGAATTCTCGAGGCTCAGCCAAATGTATATGCAGCAATAATTGGAGAAAAGATTT
rJMFF014H18+          CTATAAGAATTCTCGAGGCTCAGCCAAATGTATATGCAGCAATAATTGGAGAAAAGATTT
                      ____________________________________________________________
consensus             CTATAAGAATTCTCGAGGCTCAGCCAAATGTATATGCAGCAATAATTGGAGAAAAGATTT
 
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rJMSF007N22+          GCATGAAGATCGGTGATGGGTCGTGGTGCCCGGCTGGGGCAGAGTGGAGACTTGCAACTA
rJMFF004A18+          GCATGAAGATCGGTGATGGGTCGTGGTGCCCGGCTGGGGCAGAGTGGAGACTTGCAACTA
rJMFF011E13+          GCATGAAGATCGGTGATGGGTCGTGGTGCCCGGCTGGGGCAGAGTGGAGACTCGCAACTA
rJMFF014H18+          GCATGAAGATCGGTGATGGGTCGTGGTGCCCGGCTGGGGCAGAGTGGAGACTTGCAACTA
                      ____________________________________________________________
consensus             GCATGAAGATCGGTGATGGGTCGTGGTGCCCGGCTGGGGCAGAGTGGAGACTTGCAACTA
 
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rJMSF007N22+          GTGGCCACCGCTATGCAATCTGGCAGAAGTAACAATCTCTTGGCGGTAATGAGCACCCAT
rJMFF004A18+          GTGGCCACCGCTATGCAATCTGGCAGAAGTAACAATCTCTTGGCGGTAATGAGCACCCAT
rJMFF011E13+          GTGGCCACCGCTATGCAATCTGGCAGAAGTAACAATCTCTTGGCGGTAATGAGCACCCAT
rJMFF014H18+          GTGGCCACCGCTATGCAATCTGGCAGAAGTAACAATCTCTTGGCGGTAATGAGCACCCAT
                      ____________________________________________________________
consensus             GTGGCCACCGCTATGCAATCTGGCAGAAGTAACAATCTCTTGGCGGTAATGAGCACCCAT
 
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rJMSF007N22+          CTTGTGAAAGATTGGGGGAATTTGTCATCAGGTATAACTATTAGTTAGAGATCGAGGAGT
rJMFF004A18+          CTTGTGAAAGATTGGGGGAATTTGTCATCAGGTATAACTATTAGTTAGAGATCGAGGAGT
rJMFF011E13+          CTTGTGAAAGATTGGGGGAATTNGTCATCAGGTATAACTATTAGTTAGAGATCGAGGAGT
rJMFF014H18+          CTTGTGAAAGATTGGGGGAATTTGTCATCAGGTATAACTATTAGTTAGAGATCGAGGAGT
                      ____________________________________________________________
consensus             CTTGTGAAAGATTGGGGGAATTTGTCATCAGGTATAACTATTAGTTAGAGATCGAGGAGT
 
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rJMSF007N22+          TTACTTATAAGATTTCTTGAATAAGACTTTCTATTTCAGTTGTAAC              
rJMFF004A18+          TTACTTATAAGATTTCTTGAATAAGACTTTCTATTTCAGTTGTAACAATGGCTGTAATAT
rJMFF011E13+          TTACTTATAAGATTTCTTGAATAAGACTTTCTATTTCAGTTGTAACAATGGCTGTAATAT
rJMFF014H18+          TTACTTATAAGATTTCTTGAATAAGACTTTCTATTTCAGTTGTAACAATGGCTGTAATAT
                      ____________________________________________________________
consensus             TTACTTATAAGATTTCTTGAATAAGACTTTCTATTTCAGTTGTAACAATGGCTGTAATAT
 
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rJMFF004A18+          TTTGTTATAATTCTCTGTAAGACAATAAAATGGCCATTCGAGAGTTGAGTATTC      
rJMFF011E13+          TTTGTTATAATTCTCTGTAAGACAATAAAATGGCCATTCGAGAGTTGAGTATTC      
rJMFF014H18+          TTTGTTATAATTCTCTGTAAGACAATAAAATGGCCATTCGAGAGTTGAGTATTCAGTAAT
                      ____________________________________________________________
consensus             TTTGTTATAATTCTCTGTAAGACAATAAAATGGCCATTCGAGAGTTGAGTATTCAGTAAT