Contig 001080:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003N17Sequence605006472 (3)ref|XP_009587959.1|4e-52PREDICTED: histidinol dehydrogenase, chloroplastic-like isoform X1 [Nicotiana t758001080 (3)ref|XP_002523482.1|6e-114histidinol dehydrogenase, putative [Ricinus communis] gb|EEF38941.1| histidinol
JMFF014G12Sequence497006472 (3)ref|XP_009587959.1|2e-28PREDICTED: histidinol dehydrogenase, chloroplastic-like isoform X1 [Nicotiana t800001080 (3)gb|KDP34920.1|2e-123hypothetical protein JCGZ_09208 [Jatropha curcas]
JMSF017F06Sequence608006472 (3)ref|XP_009587959.1|1e-24PREDICTED: histidinol dehydrogenase, chloroplastic-like isoform X1 [Nicotiana t784001080 (3)gb|KDP34920.1|7e-133hypothetical protein JCGZ_09208 [Jatropha curcas]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017F06+                                                                     T
                      ____________________________________________________________
consensus                                                                        T
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017F06+          TCAGAATAGTGAGGNTATGGTTTCAATTGACATGCCTGCTGGACCATCAGAAGTTCTTGT
rJMFF014G12+                                                  GGACCATCAGAAGTTCTTGT
                      ____________________________________________________________
consensus             TCAGAATAGTGAGGNTATGGTTTCAATTGACATGCCTGCTGGACCATCAGAAGTTCTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017F06+          CATAGCTGACAAGAATGCTACTCCAGCTCATGTTGCTGCAGATTTACTTTCTCAGGCAGA
rJMFF003N17+                                CCAGCTCATGTTGCTGCAGATTTACTTTNTCAGGCAGA
rJMFF014G12+          CATAGCTGACAAGAATGCTACTCCAGCTCATGTTGCTGCAGATTTACTTTCTCAGGCAGA
                      ____________________________________________________________
consensus             CATAGCTGACAAGAATGCTACTCCAGCTCATGTTGCTGCAGATTTACTTTCTCAGGCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017F06+          ACATGGCCCAGATAGCCAGGTTGTTCTCGTAATTGTTGGGGACGATGTAAATCTAACTGC
rJMFF003N17+          ACATGGCCCAGATAGCCAGGTTGTTCTCGTAATTGTTGGGGACGATGTAAATCTAACTGC
rJMFF014G12+          ACATGGCCCAGATAGCCAGGTTGTTCTCGTAATTGTTGGGGACGATGTAAATCTAACTGC
                      ____________________________________________________________
consensus             ACATGGCCCAGATAGCCAGGTTGTTCTCGTAATTGTTGGGGACGATGTAAATCTAACTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017F06+          TATTCAGGAGGAAATCAACCAGCAGTGTCGAAGCCTTCCAAGGGGAGAATTTGCTTCAAA
rJMFF003N17+          TATTCAGGAGGAAATCAACCAGCAGTGTCGAAGCCTTCCAAGGGGAGAATTTGCTTCAAA
rJMFF014G12+          TATTCAGGAGGAAATCAACCAGCAGTGTCGAAGCCTTCCAAGGGGAGAATTTGCTTCAAA
                      ____________________________________________________________
consensus             TATTCAGGAGGAAATCAACCAGCAGTGTCGAAGCCTTCCAAGGGGAGAATTTGCTTCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017F06+          AGCACTTGATCATAGTTTTACAGTACTTGCACGTGATATGATTGAGGCGATTGCTTTTTC
rJMFF003N17+          AGCACTTGATCATAGTTTTACAGTACTTGCACGTGATATGATTGAGGCGATTGCTTTTTC
rJMFF014G12+          AGCACTTGATCATAGTTTTACAGTACTTGCACGTGATATGATTGAGGCGATTGCTTTTTC
                      ____________________________________________________________
consensus             AGCACTTGATCATAGTTTTACAGTACTTGCACGTGATATGATTGAGGCGATTGCTTTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017F06+          AAACACGTATGCACCCGAGCATCTTATCATAAACGTAAAAGATGCTGAGAAGTGGGAGAG
rJMFF003N17+          AAACACGTATGCACCCGAGCATCTTATCATAAACGTAAAAGATGCTGAGAAGTGGGAGAG
rJMFF014G12+          AAACACGTATGCACCCGAGCATCTTATCATAAACGTAAAAGATGCTGAGAAGTGGGAGAG
                      ____________________________________________________________
consensus             AAACACGTATGCACCCGAGCATCTTATCATAAACGTAAAAGATGCTGAGAAGTGGGAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017F06+          TTTCATTGAGAATGCAGGTTCTGTGTTTTTAGGACAATGGACACCGGAGAGTGTAGGCGA
rJMFF003N17+          TTTCATTGAGAATGCAGGTTCTGTGTTTTTAGGACAATGGACACCGGAGAGTGTAGGCGA
rJMFF014G12+          TTTCATTGAGAATGCAGGTTCTGTGTTTTTAGGACAATGGACACCGGAGAGTGTAGGCGA
                      ____________________________________________________________
consensus             TTTCATTGAGAATGCAGGTTCTGTGTTTTTAGGACAATGGACACCGGAGAGTGTAGGCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017F06+          TTATGCCAGCGGGACAAATCACGTCCTCCCAACTTACGGCTATGCACGGATGTATGGCGG
rJMFF003N17+          TTATGCCAGCGGGACAAATCACGTCCTCCCAACTTACGGCTATGCACGGATGTATGGCGG
rJMFF014G12+          TTATGCCAGCGGGACAAATCACGTCCTCCCAACTTACGGCTATGCACGGATGTATGGCGG
                      ____________________________________________________________
consensus             TTATGCCAGCGGGACAAATCACGTCCTCCCAACTTACGGCTATGCACGGATGTATGGCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017F06+          GGTGTCTTTAGACTCATTCCTTAAGTACATCACGGTGCAGTCTTTGACTGAGGAAGGGCT
rJMFF003N17+          GGTGTCTTTAGACTCATTCCTTAAGTACATCACGGTGCAGTCTTTGACTGAGGAAGGGCT
rJMFF014G12+          GGTGTCTTTAGACTCATTCCTTAAGTACATCACGGTGCAGTCTTTGACTGAGGAAGGGCT
                      ____________________________________________________________
consensus             GGTGTCTTTAGACTCATTCCTTAAGTACATCACGGTGCAGTCTTTGACTGAGGAAGGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017F06+          GAAAAACCTAGGGCCTTGTGTGGCCACCATGGCTGATGTTGAAGGCTTGGAAGCCCACAA
rJMFF003N17+          GAAAAACCTAGGGCCTTGTGTGGCCACCATGGCTGATGTTGAAGGCTTGGAAGCCCACAA
rJMFF014G12+          GAAAAACCTAGGGCCTTGTGTGGCCACCATGGCTGATGTTGAAGGCTTGGAAGCCCACAA
                      ____________________________________________________________
consensus             GAAAAACCTAGGGCCTTGTGTGGCCACCATGGCTGATGTTGAAGGCTTGGAAGCCCACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017F06+          GAGGGCAGTCACCCTCAGGCTGCAGGACATTGAAGCAAGACAAGCTTCTCGTGCAAGATA
rJMFF003N17+          GAGGGCAGTCACCCTCAGGCTGCAGGACATTGAAGCAAGACAAGCTTCTCGTGCAAGATA
rJMFF014G12+          GAGGGCAGTCACCCTCAGGCTGCAGGACATTGAAGCAAGACAAGCTTCTCGTGCAAGATA
                      ____________________________________________________________
consensus             GAGGGCAGTCACCCTCAGGCTGCAGGACATTGAAGCAAGACAAGCTTCTCGTGCAAGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017F06+          ATAAGAAGACGAGATGGATTCAAGTGTAAACTTACAGACACAGTGGAGTGAAGTTTTGTT
rJMFF003N17+          ATAAGAAGACGAGATGGATTCAAGTGTAAACTTACAGACACAGTGGAGTGAAGTTTTGTT
rJMFF014G12+          ATAAGAAGACGAGATGGATTCAAGTGTAAACTTACAGACACAGTGGAGTGAAGTTTTGTT
                      ____________________________________________________________
consensus             ATAAGAAGACGAGATGGATTCAAGTGTAAACTTACAGACACAGTGGAGTGAAGTTTTGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017F06+          TGTTCATTTCTTGTCTACATACAATTGCCATTCCTAAGATGTTTTAGTGTTTTACCATGA
rJMFF003N17+          TGTTCATTTCTTGTCTACATACAATTGCCATTCCTAAGATGTTTTAGTGTTTTACCATGA
rJMFF014G12+          TGTTCATTTCTTGTCTACATACAATTGCCATTCCTAAGATGTTTTAGTGTTTTACCATGA
                      ____________________________________________________________
consensus             TGTTCATTTCTTGTCTACATACAATTGCCATTCCTAAGATGTTTTAGTGTTTTACCATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017F06+          ACT                                                         
rJMFF003N17+          ACTTATATATACAAGTAAAAATGTCTGCGTTCTAGTTTGGTTCACAGTTCATAAATAGCA
rJMFF014G12+          ACTTATATATACAAGTAAAAATGTCTGCGTTCTAGTTTGGTTCACAGTTCATAAATAGCA
                      ____________________________________________________________
consensus             ACTTATATATACAAGTAAAAATGTCTGCGTTCTAGTTTGGTTCACAGTTCATAAATAGCA