Contig 001078:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF014M17-                                                          GGATTCTCATACT
                      ____________________________________________________________
consensus                                                            GGATTCTCATACT
 
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JMSF014M17-           GCTCCTTCGTTTTCCTCAGCAGAGAAAATATATATCTTCGCTGTCAACATTTCAGGAATT
                      ____________________________________________________________
consensus             GCTCCTTCGTTTTCCTCAGCAGAGAAAATATATATCTTCGCTGTCAACATTTCAGGAATT
 
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JMSF014M17-           AAAAATGGCGGAGCCAAAGATCTTTGAACTCAACAATGGCACTACGCAAGTCAAAGTCTC
                      ____________________________________________________________
consensus             AAAAATGGCGGAGCCAAAGATCTTTGAACTCAACAATGGCACTACGCAAGTCAAAGTCTC
 
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JMSF014M17-           CAATTTTGGGTGCACTATTCTCTCCTTGTCTGTACCAGATAAAGATGGTAACTCTATATC
                      ____________________________________________________________
consensus             CAATTTTGGGTGCACTATTCTCTCCTTGTCTGTACCAGATAAAGATGGTAACTCTATATC
 
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JMSF014M17-           ATTTGTTTTTTCTTTTCAATTGTGTTTTTAGTTTTTTATTTCTGAAAATCTAATCTCTAT
                      ____________________________________________________________
consensus             ATTTGTTTTTTCTTTTCAATTGTGTTTTTAGTTTTTTATTTCTGAAAATCTAATCTCTAT
 
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JMSF014M17-           TTGATTTCTTTTTGGACTGGATTGTGAAGGGAAATTGGATGATGTGGTTCTCGGATTTGA
JMFF014D17-                                       GGGAAATTGGATGATGTGGTTCTCGGATTTGA
                      ____________________________________________________________
consensus             TTGATTTCTTTTTGGACTGGATTGTGAAGGGAAATTGGATGATGTGGTTCTCGGATTTGA
 
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JMSF014M17-           TACACTTGAACCCTATCTGAAAGGAATGGCACCTTATTTTGGTTGCATTGTTGGCAGGGT
JMFF014D17-           TACACTTGAACCCTATCTGAAAGGAATGGCACCTTATTTTGGTTGCATTGTTGGCAGGGT
                      ____________________________________________________________
consensus             TACACTTGAACCCTATCTGAAAGGAATGGCACCTTATTTTGGTTGCATTGTTGGCAGGGT
 
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JMSF014M17-           AGCCAATAGGATCAAAGAAGGGAAGTTCACTCTTAATGGAGTTGAATATTCACTTGCAAT
JMFF014D17-           AGCCAATAGGATCAAAGAAGGGAAGTTCACTCTTAATGGAGTTGAATATTCACTTGCAAT
                      ____________________________________________________________
consensus             AGCCAATAGGATCAAAGAAGGGAAGTTCACTCTTAATGGAGTTGAATATTCACTTGCAAT
 
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JMSF014M17-           TAACAATCCCCCTAACAGTCTACATGGTGGACA                           
JMFF014D17-           TAACAATCCCCCTAACAGTCTACATGGTGGACAGAAGGGGTATGACAAGGTTGTATGGGA
                      ____________________________________________________________
consensus             TAACAATCCCCCTAACAGTCTACATGGTGGACAGAAGGGGTATGACAAGGTTGTATGGGA
 
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JMFF014D17-           GGTTGTTGAACAGAAGCAGGGCGAAAGCCCCTCGATTACCTTTAAATATCAGAGTCATGA
rJMSF014M17+                       AAGCAGGGCGAAAGCCCCTCGATTACCTTTAAATATCAGAGTCATGA
                      ____________________________________________________________
consensus             GGTTGTTGAACAGAAGCAGGGCGAAAGCCCCTCGATTACCTTTAAATATCAGAGTCATGA
 
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JMFF014D17-           TGG                                                         
rJMSF014M17+          TGGGGAGGAAGGTTTCCCGGGAGATCTCTCTGTTACTGCGACATACACACTTACTTCTAA
rJMFF014D17+                                                                   TAA
                      ____________________________________________________________
consensus             TGGGGAGGAAGGTTTCCCGGGAGATCTCTCTGTTACTGCGACATACACACTTACTTCTAA
 
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rJMSF014M17+          GACAACATTGAAGCTCGACATGGCAGCAGTTCCCGGGAATAAGCCTACTCCTGTCAACTT
rJMFF014D17+          GACAACATTGAAGCTCGACATGGCAGCAGTTCCCGGGAATAAGCCTACTCCTGTCAACTT
                      ____________________________________________________________
consensus             GACAACATTGAAGCTCGACATGGCAGCAGTTCCCGGGAATAAGCCTACTCCTGTCAACTT
 
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rJMSF014M17+          GGCTCAACACACATACTGGAACCTTGCCGGCCACAGTTCTGGGGACATTCTCGGACACAC
rJMFF014D17+          GGCTCAACACACATACTGGAACCTTGCCGGCCACAGTTCTGGGGACATTCTCGGACACAC
                      ____________________________________________________________
consensus             GGCTCAACACACATACTGGAACCTTGCCGGCCACAGTTCTGGGGACATTCTCGGACACAC
 
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rJMSF014M17+          TGCTCAGCTATGGGCAAACCATGTTACTCCAATGGATCAAAACAGCATTCCAACTGGAGA
rJMFF016H08+                  TATGGGCAAACCATGTTACTNCAATGGATCAAAACAGCATTCCAACTGGAGA
rJMFF014D17+          TGCTCAGCTATGGGCAAACCATGTTACTCCAATGGATCAAAACAGCATTCCAACTGGAGA
                      ____________________________________________________________
consensus             TGCTCAGCTATGGGCAAACCATGTTACTCCAATGGATCAAAACAGCATTCCAACTGGAGA
 
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rJMSF014M17+          AATATTGCCTGTCAAAGGCACCCCGTTTGACTTCACCACTGAAAAGGCAATTGGTCGTGA
rJMFF016H08+          AATATTGCCTGTCAAAGGCACCCCGTTTGACTTCACCACTGAAAAGGCAATTGGTCGTGA
rJMFF014D17+          AATATTGCCTGTCAAAGGCACCCCGTTTGACTTCACCACTGAAAAGGCAATTGGTCGTGA
                      ____________________________________________________________
consensus             AATATTGCCTGTCAAAGGCACCCCGTTTGACTTCACCACTGAAAAGGCAATTGGTCGTGA
 
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rJMSF014M17+          CATCCAGCAGGTTGGTATAGGATACGACGACAACTATGTGCTCGA-CTGTGGAGACGAGA
rJMFF016H08+          CATCCAGCAGGTTGGTATAGGATACGACGACAACTATGTGCTCGACCTGTGGAGNCGAGA
rJMFF014D17+          CATCCAGCAGGTTGGTATAGGATACGACGACAACTATGTGCTCGA-CTGTGGAGACGAGA
                      ____________________________________________________________
consensus             CATCCAGCAGGTTGGTATAGGATACGACGACAACTATGTGCTCGA-CTGTGGAGACGAGA
 
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rJMSF014M17+          AAGAGGGCTTGAAACACGCTGCAAAGATTAAAGACCCCAAGAGCTCGAGGGTTCTTAACC
rJMFF016H08+          AAGAGGGCTTGANACACGNTGCAAAGATTAAAGACCCCAAGAGCTNGAGGGTTTTTAACC
rJMFF014D17+          AAGAGGGCTTGAAACACGCTGCAAAGATTAAAGACCCCAAGAGCTCGAGGGTTCTTAACC
                      ____________________________________________________________
consensus             AAGAGGGCTTGAAACACGCTGCAAAGATTAAAGACCCCAAGAGCTCGAGGGTTCTTAACC
 
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rJMSF014M17+          TGTGGACCAATGCCCCTGGCATGCAGTTCTACACCGCTAACTATGTGAACGGAGTTGTCG
rJMFF016H08+          TGTGGACCAATGCCCCT                                           
rJMFF014D17+          TGTGGACCAATGCCCCTGGCATGCAGTTCTACACCGCTAACTATGTGAACGGAGTTGTCG
                      ____________________________________________________________
consensus             TGTGGACCAATGCCCCTGGCATGCAGTTCTACACCGCTAACTATGTGAACGGAGTTGTCG
 
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rJMSF014M17+          GTAAAAATGGAGCTGTTTACAATAAGCATGCAGGTGTTTGTTTAGAGACTCAGGGTTTCC
rJMFF014D17+          GTAAAAATGGAGCTGTTTACAATAAGCATGCAGGTGTTTGTTTAGAGACTCAGGGTTTCC
                      ____________________________________________________________
consensus             GTAAAAATGGAGCTGTTTACAATAAGCATGCAGGTGTTTGTTTAGAGACTCAGGGTTTCC
 
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rJMSF014M17+          CAAATGCCATCAACACCCCAAATTTCCCATCCATTATTGTTCAACCGGGCGAGAAGTATC
rJMFF014D17+          CAAATGCCATCAACACCCCAAATTTCCCATCCATTATTGTTCAACCGGGCGAGAAGTATC
                      ____________________________________________________________
consensus             CAAATGCCATCAACACCCCAAATTTCCCATCCATTATTGTTCAACCGGGCGAGAAGTATC
 
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rJMSF014M17+          AGCATACCATGCTGTTTGAGTTTTCAGTTGAGTAAGATGATGTTGTTTAGGAAGTTAATA
rJMFF014D17+          AGCATACCATGCTGTTTGAGTTTTCAGTTGAGTAAGATGATGTTGTTTAGGAAGTTAATA
                      ____________________________________________________________
consensus             AGCATACCATGCTGTTTGAGTTTTCAGTTGAGTAAGATGATGTTGTTTAGGAAGTTAATA
 
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rJMSF014M17+          ATATATAACAATAAAGTTCTCCCTTGTAAAGGCATAGCCTTAGAATGGTAATTT      
rJMFF014D17+          ATATATAACAATAAAGTTCTCCCTTGTAAAGGCATAGCCTTAGAATGGTAATTTTTTAGT
                      ____________________________________________________________
consensus             ATATATAACAATAAAGTTCTCCCTTGTAAAGGCATAGCCTTAGAATGGTAATTTTTTAGT
 
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rJMFF014D17+          AACCAGCTGGGAATAAAGTTAGGTTTGGGAGTGACAGTGATGAGTAATTAATGGATTGTG
                      ____________________________________________________________
consensus             AACCAGCTGGGAATAAAGTTAGGTTTGGGAGTGACAGTGATGAGTAATTAATGGATTGTG
 
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rJMFF014D17+          TTGAGTACCTTTTAGACATGCAGTACTGTATTTGGGAGAAGAGCTATTTAAATAACCATA
                      ____________________________________________________________
consensus             TTGAGTACCTTTTAGACATGCAGTACTGTATTTGGGAGAAGAGCTATTTAAATAACCATA