Contig 001076:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF013P17-                                                                  ATTCG
                      ____________________________________________________________
consensus                                                                    ATTCG
 
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JMFF013P17-           GCACAAAATGAAGCGGAAGGTGCGGCCACTCTTCAGCGTACTTCTGTTCATAGCTCTGGG
                      ____________________________________________________________
consensus             GCACAAAATGAAGCGGAAGGTGCGGCCACTCTTCAGCGTACTTCTGTTCATAGCTCTGGG
 
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JMFF013P17-           GGGGACGCTTTTCGTCCGGGTCGCTTTTCGGTATTGCTCTGTTCAGTCAAGAATCGGGAA
                      ____________________________________________________________
consensus             GGGGACGCTTTTCGTCCGGGTCGCTTTTCGGTATTGCTCTGTTCAGTCAAGAATCGGGAA
 
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JMFF013P17-           CCCATTTGCGAGAATGCCCCAAGCTGTAGTCTTTAACGACACCCTTCTCAAGTTTGCGAG
                      ____________________________________________________________
consensus             CCCATTTGCGAGAATGCCCCAAGCTGTAGTCTTTAACGACACCCTTCTCAAGTTTGCGAG
 
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JMFF013P17-           CCTGGATGTTGGGGAGCCTCAGTTGAGGAAGGAGGTAGATGAGCTTTTAGAAGGTAATTT
                      ____________________________________________________________
consensus             CCTGGATGTTGGGGAGCCTCAGTTGAGGAAGGAGGTAGATGAGCTTTTAGAAGGTAATTT
 
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JMFF013P17-           CAGAACCCATGGTCGCCATAGATCTTTCTTGTCTTCTGGTAGATATCATATTGACCTTAG
                      ____________________________________________________________
consensus             CAGAACCCATGGTCGCCATAGATCTTTCTTGTCTTCTGGTAGATATCATATTGACCTTAG
 
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JMFF013P17-           AATCAGGTCAGCTAAAGGGATGCCTTTGCAGCTCCGGTCCCCGGAGTTTAACCTGCTCTG
                      ____________________________________________________________
consensus             AATCAGGTCAGCTAAAGGGATGCCTTTGCAGCTCCGGTCCCCGGAGTTTAACCTGCTCTG
 
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JMFF013P17-           GCTGAGCTTCCGGAGGTATTTGCGTGATTGGTTTCGTAATAGGAAGCTTCAGACTGATTC
                      ____________________________________________________________
consensus             GCTGAGCTTCCGGAGGTATTTGCGTGATTGGTTTCGTAATAGGAAGCTTCAGACTGATTC
 
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JMFF013P17-           TATGATTGGTTTGTTAAATGGAGTAAAAGTTTTGATTGATAAGCACAATGGGAAATTTGG
rJMSF038J16+              ATTGGTTTGTTAAATGGAGTAAAAGTTTTGANTGATAAGCACAATGGGAAATTTGG
                      ____________________________________________________________
consensus             TATGATTGGTTTGTTAAATGGAGTAAAAGTTTTGATTGATAAGCACAATGGGAAATTTGG
 
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JMFF013P17-           AGTGG                                                       
rJMSF038J16+          AGTGGAGAAGGAGAGGTACAGTTCTGTGCAGTTGTGGGGAATAGTGGGATTTTATTGAAT
                      ____________________________________________________________
consensus             AGTGGAGAAGGAGAGGTACAGTTCTGTGCAGTTGTGGGGAATAGTGGGATTTTATTGAAT
 
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rJMSF038J16+          AGTGAGTATGGGAAGGTGATTGATGGCCACGAGATTGTGATTCGATTGAACAATGCAAGA
                      ____________________________________________________________
consensus             AGTGAGTATGGGAAGGTGATTGATGGCCACGAGATTGTGATTCGATTGAACAATGCAAGA
 
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rJMSF038J16+          ACTGGAGGGTTTGAGAGGAATGTAGGCTCAAAAACAACTATTTCCTTTGTGAATAGTAAC
rJMFF022J17+                                                          GTGAATAGTAAC
                      ____________________________________________________________
consensus             ACTGGAGGGTTTGAGAGGAATGTAGGCTCAAAAACAACTATTTCCTTTGTGAATAGTAAC
 
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rJMSF038J16+          ATATTGCATCTATGTGCCCGGAGGGAGGGGTGTTTCTGCCATCCTTACGGGCTAAACGTG
rJMFF022J17+          ATATTGCATCTATGTGCCCGGAGGGAGGGGTGTTTCTGCCATCNTTACGGGCTAAACGTG
rJMFF013P17+                                                      TTACGGGCTAAACGTG
                      ____________________________________________________________
consensus             ATATTGCATCTATGTGCCCGGAGGGAGGGGTGTTTCTGCCATCCTTACGGGCTAAACGTG
 
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rJMSF038J16+          GCGATGATTATGTATATTTGTCAACCGGTGCATTTCTTTGATTATCTGGCCTGCAATGCC
rJMFF022J17+          GCGATGATTATGTATATTTGTCAACCGGTGCATTTCTTTGATTATCTGGCCTGCGATGCC
rJMSF035N07+                                                                 ATGCC
rJMFF013P17+          GCGATGATTATGTATATTTGTCAACCGGTGCATTTCTTTGATTATCTGGCCTGCAATGCC
                      ____________________________________________________________
consensus             GCGATGATTATGTATATTTGTCAACCGGTGCATTTCTTTGATTATCTGGCCTGCAATGCC
 
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rJMSF038J16+          TCCTTCAAGTCCCCATTGATTGTCACTGATCCTCGGTTCGATGTGATGTGTGCTAGGATT
rJMFF022J17+          TCCTTCAAGTCCCCATTGATTGTCACTGATCCTCGGTTCGATGTGATGTGTGCTAGGATT
rJMSF035N07+          TCCTTCAAGTCCCCATTGATTGTCACTGATCCTCGGTTCGATGTGATGTGTGCTAGGATT
rJMFF013P17+          TCCTTCAAGTCCCCATTGATTGTCACTGATCCTCGGTTCGATGTGATGTGTGCTAGGATT
                      ____________________________________________________________
consensus             TCCTTCAAGTCCCCATTGATTGTCACTGATCCTCGGTTCGATGTGATGTGTGCTAGGATT
 
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rJMSF038J16+          GTGAAGTACTATTCATTGAAACGGTTTGTGGAGGCTTCAGGGAAGAACGTCGAGGAATGG
rJMFF022J17+          GTGAAGTACTATTCATTGAAACGGTTTGTGGAGGCTTCAGGGAAGAACGTCGAGGAATGG
rJMSF035N07+          GTGAAGTACTATTCATTGAAACGGTTTGTGGAGGCTTCAGGGAAGAACGTCGAGGAATGG
rJMFF013P17+          GTGAAGTACTATTCATTGAAACGGTTTGTGGAGGCTTCAGGGAAGAACGTCGAGGAATGG
                      ____________________________________________________________
consensus             GTGAAGTACTATTCATTGAAACGGTTTGTGGAGGCTTCAGGGAAGAACGTCGAGGAATGG
 
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rJMSF038J16+          GGAGCCTCTCATGACGCGGTTAACTTTCATTACTCCTCGGGTATGCAGGCGGTGATGCTG
rJMFF022J17+          GGAGCCTCTCATGACGCGGTTAACTTTCATTACTCCTCGGGTATGCAGGCGGTGATGCTG
rJMSF035N07+          GGAGCCTCTCATGACGCGGTTAACTTTCATTACTCCTCGGGTATGCAGGCGGTGATGCTG
rJMFF013P17+          GGAGCCTCTCATGACGCGGTTAACTTTCATTACTCCTCGGGTATGCAGGCGGTGATGCTG
                      ____________________________________________________________
consensus             GGAGCCTCTCATGACGCGGTTAACTTTCATTACTCCTCGGGTATGCAGGCGGTGATGCTG
 
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rJMSF038J16+          TCTTTAGGGTTGTGTGAGAAAGTTAGCGTTTTTGGATTTGGCAAATCCGCAGCAGCTAAA
rJMFF022J17+          TCTTTAGGGTTGTGTGAGAAAGTTAGCGTTTTTGGATTTGGCAAATCCGCAGCAGCTAAA
rJMSF035N07+          TCTTTAGGGTTGTGTGAGAAAGTTAGCGTTTTTGGATTTGGCAAATCCGCAGCAGCTAAA
rJMFF013P17+          TCTTTAGGGTTGTGTGAGAAAGTTAGCGTTTTTGGATTTGGCAAATCCGCAGCAGCTAAA
                      ____________________________________________________________
consensus             TCTTTAGGGTTGTGTGAGAAAGTTAGCGTTTTTGGATTTGGCAAATCCGCAGCAGCTAAA
 
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rJMSF038J16+          CACCATTACCACACCAATCAGAAGGCCGAGCTCAAGTTGCATGACTATGAGGCAGAGTAT
rJMFF022J17+          CACCATTACCACACCAATCAGAAGGCCGAGCTCAAGTTGCATGACTATGAGGCAGAGTAT
rJMSF035N07+          CACCATTACCACACCAATCAGAAGGCCGAGCTCAAGTTGCATGACTATGAGGCAGAGTAT
rJMFF013P17+          CACCATTACCACACCAATCAGAAGGCCGAGCTCAAGTTGCATGACTATGAGGCAGAGTAT
                      ____________________________________________________________
consensus             CACCATTACCACACCAATCAGAAGGCCGAGCTCAAGTTGCATGACTATGAGGCAGAGTAT
 
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rJMSF038J16+          GATTTCTACCGGGATTTGGTGGAGAGGCCTCAGGTAATACCATTCATCCCGGGTAATTTC
rJMFF022J17+          GATTTCTACCGGGATTTGGTGGAGAGGCCTCAGGTAATACCATTCATCCCGGGTAATTTC
rJMSF035N07+          GATTTCTACCGGGATTTGGTGGAGAGGCCTCAGGTAATACCATTCATCCCGGGTAATTTC
rJMFF013P17+          GATTTCTACCGGGATTTGGTGGAGAGGCCTCAGGTAATACCATTCATCCCGGGTAATTTC
                      ____________________________________________________________
consensus             GATTTCTACCGGGATTTGGTGGAGAGGCCTCAGGTAATACCATTCATCCCGGGTAATTTC
 
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rJMSF038J16+          AAGGTTCCTCCCGTTGCTATATACCAATGATATTTTCCACGTTTACCACTTTGCCCTCAC
rJMFF022J17+          AAGGTTCCTCCCGTTGCTATATACCAATGATATTTTCCACGTTTACCACTTTGCCCTCAC
rJMSF035N07+          AAGGTTCCTCCCGTTGCTATATACCAATGATATTTTCCACGTTTACCACTTTGCCCTCAC
rJMFF013P17+          AAGGTTCCTCCCGTTGCTATATACCAATGATATTTTCCACGTTTACCACTTTGCCCTCAC
                      ____________________________________________________________
consensus             AAGGTTCCTCCCGTTGCTATATACCAATGATATTTTCCACGTTTACCACTTTGCCCTCAC
 
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rJMSF038J16+          GTGCCATGCTTAGATTGTTTTGTCAAGTTCCATGCTTTCTTATGCTGTAATGGTAGTCTC
rJMFF022J17+          GTGCCATGCTTAGATTGTTTTGTCAAGTTCCATGCTTTCTTATGCTGTAATGGTAGTCTC
rJMSF035N07+          GTGCCATGCTTAGATTGTTTTGTCAAGTTCCATGCTTTCTTATGCTGTAATGGTAGTCTC
rJMFF013P17+          GTGCCATGCTTAGATTGTTTTGTCAAGTTCCATGCTTTCTTATGCTGTAATGGTAGTCTC
                      ____________________________________________________________
consensus             GTGCCATGCTTAGATTGTTTTGTCAAGTTCCATGCTTTCTTATGCTGTAATGGTAGTCTC
 
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rJMSF038J16+          CCACTCTCCCACTCTCCCATGTGTAAGGTAACGGGAGGATATACTGTCTTAAAGACTTAA
rJMFF022J17+          CCACTCTCCCACTCTCCCATGTGTAAGGTAACGGGAGGATATACTGTCTTAAAGACTTAA
rJMSF035N07+          CCACTCTCCCACTCTCCCATGTGTAAGGTAACGGGAGGATATACTGTCTTAAAGACTTAA
rJMFF013P17+          CCACTCTCCCACTCTCCCATGTGTAAGGTAACGGGAGGATATACTGTCTTAAAGACTTAA
                      ____________________________________________________________
consensus             CCACTCTCCCACTCTCCCATGTGTAAGGTAACGGGAGGATATACTGTCTTAAAGACTTAA
 
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rJMSF038J16+          ATATCAACGCCCCTGATTTGTGCAAGGTTCGGGGTGCAACTCAAGTGTAAAATG      
rJMFF022J17+          ATATCAACGCCCCTGATTTGTGCAAGGTTCGGGGTGCAACTCAAGTGTAAAATGGAATAT
rJMSF035N07+          ATATCAACGCCCCTGATTTGTGCAAGGTTCGGGGTGCAACTCAAGTGTAAAATGGAATAT
rJMFF013P17+          ATATCAACGCCCCTGATTTGTGCAAGGTTCGGGGTGCAACTCAAGTGTAAAATGGAATAT
                      ____________________________________________________________
consensus             ATATCAACGCCCCTGATTTGTGCAAGGTTCGGGGTGCAACTCAAGTGTAAAATGGAATAT
 
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rJMFF022J17+          GACAAGTGCTAAAT                                              
rJMSF035N07+          GACAAGTGCTAAATTGTACGTTTTTTCAATCTTTGCAAGAGTGT                
rJMFF013P17+          GACAAGTGCTAAATTGTACGTTTTTTCAATCTTTGCAAGAGTGTTCCAAGTCCTAATATA
                      ____________________________________________________________
consensus             GACAAGTGCTAAATTGTACGTTTTTTCAATCTTTGCAAGAGTGTTCCAAGTCCTAATATA