Contig 001075:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008H14Sequence590006719 (14)ref|XP_004236950.1|2e-107PREDICTED: phosphoenolpyruvate carboxylase 4 [Solanum lycopersicum]683001075 (4)ref|XP_011070855.1|4e-110PREDICTED: phosphoenolpyruvate carboxylase 4 [Sesamum indicum]
JMFF013L07Sequence588006719 (14)ref|XP_004236950.1|4e-108PREDICTED: phosphoenolpyruvate carboxylase 4 [Solanum lycopersicum]714001075 (4)ref|XP_011070855.1|6e-110PREDICTED: phosphoenolpyruvate carboxylase 4 [Sesamum indicum]
JMFF037F02Sequence534006719 (14)ref|XP_006366062.1|4e-94PREDICTED: phosphoenolpyruvate carboxylase 4-like [Solanum tuberosum]723001075 (4)ref|XP_011070855.1|3e-113PREDICTED: phosphoenolpyruvate carboxylase 4 [Sesamum indicum]
JMSF047L19Sequence668006719 (14)ref|XP_004236950.1|5e-87PREDICTED: phosphoenolpyruvate carboxylase 4 [Solanum lycopersicum]731001075 (4)ref|XP_011070855.1|3e-118PREDICTED: phosphoenolpyruvate carboxylase 4 [Sesamum indicum]

Alignment

This contig is upended


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rJMSF047L19+                                          CACGAAGCCACGCCACAGGCCGAGCTTG
rJMFF037F02+                                                          AGGCCGAGCTTG
                      ____________________________________________________________
consensus                                             CACGAAGCCACGCCACAGGCCGAGCTTG
 
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rJMSF047L19+          GATTTCTCAACATAGGAAGCAGACCGACGAGGAGAAAGAGCTCGGTGGGAATAGGCCATC
rJMFF008H14+                TCAACATAGGAAGCAGACCGACGAGGAGAAAGAGCTCGGTGGGAATAGGCCATC
rJMFF037F02+          GATTTCTCAACATAGGAAGCAGACCGACGAGGAGAAAGAGCTCGGTGGGAATAGGCCATC
rJMFF013L07+                TCAACATAGGAAGCAGACCGACGAGGAGAAAGAGCTCGGTGGGAATAGGCCATC
                      ____________________________________________________________
consensus             GATTTCTCAACATAGGAAGCAGACCGACGAGGAGAAAGAGCTCGGTGGGAATAGGCCATC
 
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rJMSF047L19+          TTCGAGCAATCCCATGGATATTCGCGTGGACACAGACCCGATTCGTGCTCCCTTCTTGGC
rJMFF008H14+          TTCGAGCAATCCCATGGATATTCGCGTGGACACAGACCCGATTCGTGCTCCCTTCTTGGC
rJMFF037F02+          TTCGAGCAATCCCATGGATATTCGCGTGGACACAGACCCGATTCGTGCTCCCTTCTTGGC
rJMFF013L07+          TTCGAGCAATCCCATGGATATTCGCGTGGACACAGACCCGATTCGTGCTCCCTTCTTGGC
                      ____________________________________________________________
consensus             TTCGAGCAATCCCATGGATATTCGCGTGGACACAGACCCGATTCGTGCTCCCTTCTTGGC
 
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rJMSF047L19+          TCGGAGTTGGAGCCGGGATGAGAGGCGTCTGCGAGAAAGGCCACACCGAGGATCTTCGGG
rJMFF008H14+          TCGGAGTTGGAGCCGGGATGAGAGGCGTCTGCGAGAAAGGCCACACCGAGGATCTTCGGG
rJMFF037F02+          TCGGAGTTGGAGCCGGGATGAGAGGCGTCTGCGAGAAAGGCCACACCGAGGATCTTCGGG
rJMFF013L07+          TCGGAGTTGGAGCCGGGATGAGAGGCGTCTGCGAGAAAGGCCACACCGAGGATCTTCGGG
                      ____________________________________________________________
consensus             TCGGAGTTGGAGCCGGGATGAGAGGCGTCTGCGAGAAAGGCCACACCGAGGATCTTCGGG
 
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rJMSF047L19+          CAATGTACAAAGACTGGCCTTTCTTTCAGTCCACTGTTGACCTCATAGAAATGGTTTTGG
rJMFF008H14+          CAATGTACAAAGACTGGCCTTTCTTTCAGTCCACTGTTGACCTCATAGAAATGGTTTTGG
rJMFF037F02+          CAATGTACAAAGACTGGCCTTTCTTTCAGTCCACTGTTGACCTCATAGAAATGGTTTTGG
rJMFF013L07+          CAATGTACAAAGACTGGCCTTTCTTTCAGTCCACTGTTGACCTCATAGAAATGGTTTTGG
                      ____________________________________________________________
consensus             CAATGTACAAAGACTGGCCTTTCTTTCAGTCCACTGTTGACCTCATAGAAATGGTTTTGG
 
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rJMSF047L19+          GGAAAGCCGACAGCCCCATTGCGAAGTACTATGATGAAGTGTTGGTGTCCCCGAGCCGGC
rJMFF008H14+          GGAAAGCCGACAGCCCCATTGCGAAGTACTATGATGAAGTGTTGGTGTCCCCGAGCCGGC
rJMFF037F02+          GGAAAGCCGACAGCCCCATTGCGAAGTACTATGATGAAGTGTTGGTGTCCCCGAGCCGGC
rJMFF013L07+          GGAAAGCCGACAGCCCCATTGCGAAGTACTATGACGAAGTGTTGGTGTCCCCGAGCCGGC
                      ____________________________________________________________
consensus             GGAAAGCCGACAGCCCCATTGCGAAGTACTATGATGAAGTGTTGGTGTCCCCGAGCCGGC
 
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rJMSF047L19+          AAGAACTCGGGGCCGAGCTAAGGAAAGAACTTCTGACGACAGAAAAGTATGTTCTGTTGG
rJMFF008H14+          AAGAACTCGGGGCCGAGCTAAGGAAAGAACTTCTGACGACAGAAAAGTATGTTCTGTTGG
rJMFF037F02+          AAGAACTCGGGGCCGAGCTAAGGAAAGAACTTCTGACGACAGAAAAGTATGTTCTGTTGG
rJMFF013L07+          AAGAACTCGGGGCCGAGCTAAGGAAAGAACTTCTGACGACAGAAAAGTATGTTCTGTTGG
                      ____________________________________________________________
consensus             AAGAACTCGGGGCCGAGCTAAGGAAAGAACTTCTGACGACAGAAAAGTATGTTCTGTTGG
 
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rJMSF047L19+          TGACAGGACATGAGAAGCTGTCGGAGAACAACCGGAGTCTTAGGAGGTTGATTGAGAGCA
rJMFF008H14+          TGACAGGACATGAGAAGCTGTCGGAGAACAACCGGAGTCTTAGGAGGTTGATTGAGAGCA
rJMFF037F02+          TGACAGGACATGAGAAGCTGTCGGAGAACAACCGGAGTCTTAGGAGGTTGATTGAGAGCA
rJMFF013L07+          TGACAGGACATGAGAAGCTGTCGGAGAACAACCGGAGTCTTAGGAGGTTGGTTGAGAGCA
                      ____________________________________________________________
consensus             TGACAGGACATGAGAAGCTGTCGGAGAACAACCGGAGTCTTAGGAGGTTGATTGAGAGCA
 
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rJMSF047L19+          GACTTCCTTACCTCAATCCCATGAACATTCTGCAGGTGGAGATACTGAAGAGGCTTCGTC
rJMFF008H14+          GACTTCCTTACCTCAATCCCATGAACATTCTGCAGGTGGAGATACTGAAGAGGNTTCGTC
rJMFF037F02+          GACTTCCTTACCTCAATCCCATGAACATTCTGCAGGTGGAGATACTGAAGAGGCTTCGTC
rJMFF013L07+          GACTTCCTTACCTCAATCCCATGAACATTCTGCAGGTGGAGATACTGAAGAGGCTTCGTC
                      ____________________________________________________________
consensus             GACTTCCTTACCTCAATCCCATGAACATTCTGCAGGTGGAGATACTGAAGAGGCTTCGTC
 
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rJMSF047L19+          GCGACATCGATAACAACAAACTTCGAGACGCTTTGCTTATCACCATCAATGGGATTGCTG
rJMFF008H14+          GCGACATCGATAACAACAAACTTCGAGACGCTTTGCTTATCACCATCAATGGGATTGCTG
rJMFF037F02+          GCGACATCGATAACAACAAACTTCGAGACGCTTTGCTTATCACCATCAATGGGATTGCTG
rJMFF013L07+          GCGACATCGATAACAACAAACTTCGAGACGCTTTGCTTATCACCATCAATGGGATTGCTG
                      ____________________________________________________________
consensus             GCGACATCGATAACAACAAACTTCGAGACGCTTTGCTTATCACCATCAATGGGATTGCTG
 
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rJMSF047L19+          CTGGGATGAGGAATACCGGTTAATTAACTGTCTAAGATCCTATGCCACTGTCTTTGAAAG
rJMFF008H14+          CTGGGATGAGGAATACCGGTTAATTAACTGTCTAAGATCCTATGCCACTGTCTTTGAAAG
rJMFF037F02+          CTGGGATGAGGAATACCGGTTAATTAACTGTCTAAGATCCTATGCCACTGTCTTTGAAAG
rJMFF013L07+          CTGGGATGAGGAATACCGGTTAATTAACTGTCTAAGATCCTATGCCACTGTCTTTGAAAG
                      ____________________________________________________________
consensus             CTGGGATGAGGAATACCGGTTAATTAACTGTCTAAGATCCTATGCCACTGTCTTTGAAAG
 
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rJMSF047L19+          TGTAGTGAATTGTAAGGTATCCTTTTTGACTTACGTTAACTATTATCATGTTACTGGTTT
rJMFF008H14+          TGTAGTGAATTGTAAGGTATCCTTTTTGACTTACGTTAACTATTATCATGTTACTGGTTT
rJMFF037F02+          TGTAGTGAATTGTAAGGTATCCTTTTTGACTTACGTTAACTATTATCATGTTACTGGTTT
rJMFF013L07+          TGTAGTGAATTGTAAGGTATCCTTTTTGACTTACGTTAACTATTATCATGTTACTGGTTT
                      ____________________________________________________________
consensus             TGTAGTGAATTGTAAGGTATCCTTTTTGACTTACGTTAACTATTATCATGTTACTGGTTT
 
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rJMSF047L19+          GTGACTGTCTTGGTATGTATATGTTTTTGATTGTGT                        
rJMFF008H14+          GTGACTGTCTTGGTATGTATATGT                                    
rJMFF037F02+          GTGACTGTCTTGGTATGTATATGTTTTTGATTGTGTTGCTGGTTTCTTTCA         
rJMFF013L07+          GTGACTGTCTTGGTATGTATATGTTTTTGATTGTGTTGCTGGTTTCTTTCAATAAATCAT
                      ____________________________________________________________
consensus             GTGACTGTCTTGGTATGTATATGTTTTTGATTGTGTTGCTGGTTTCTTTCAATAAATCAT