Contig 001074:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006G14Sequence488002225 (4)ref|XP_009589638.1|4e-16PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana tomentosiformis]741001074 (5)ref|XP_009804899.1|9e-86PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana sylvestris]
JMFF008D21Sequence590002225 (4)ref|XP_009589638.1|3e-26PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana tomentosiformis]720001074 (5)ref|XP_009804899.1|3e-58PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana sylvestris]
JMFF013K20Sequence480002225 (4)ref|XP_009589638.1|4e-17PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana tomentosiformis]659001074 (5)ref|XP_009589638.1|2e-53PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana tomentosiformis]
JMFF035D21Sequence613001074 (5)ref|XP_009804899.1|3e-67PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana sylvestris]
JMSF022K16Sequence686002225 (4)ref|XP_009589638.1|2e-39PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana tomentosiformis]816001074 (5)ref|XP_009804899.1|7e-81PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF006G14+ CGAGTTTCTGTACTCGAAA
                      ____________________________________________________________
consensus CGAGTTTCTGTACTCGAAA
 
. : . : . : . : . : . :
rJMFF006G14+ TCGTGGGACGATTTTAAAGAGCCGTCGCGATCGCTGTTACGCTCTGTGTTACCGGAAACC
rJMFF008D21+ AGCCGTCGCGATCGCTGTTACGCTCTGTGTTACCGGAAACC
rJMSF022K16+ AAGAGCCGTCGCGATCGCTGTTACGCTCTGTGTTACCGGAAACC
                      ____________________________________________________________
consensus TCGTGGGACGATTTTAAAGAGCCGTCGCGATCGCTGTTACGCTCTGTGTTACCGGAAACC
 
. : . : . : . : . : . :
rJMFF006G14+ GGCGACGTGGCGCAACTCAGCGTTCCTTGTCTCGAGTTTGGGCCGTCGAACCGGACTT-C
rJMFF008D21+ GGCGACGTGGCGCAACTCAGCGTTCCTTGTCTCGAGTTTGGGCCGTCGAACCGGACTTCC
rJMFF035D21+ C
rJMSF022K16+ GGCGACGTGGCGCAACTCAGCGTTCCTTGTCTCGAGTTTGGGCCGTCGAACCGGACTT-C
                      ____________________________________________________________
consensus GGCGACGTGGCGCAACTCAGCGTTCCTTGTCTCGAGTTTGGGCCGTCGAACCGGACTT-C
 
. : . : . : . : . : . :
rJMFF006G14+ CCATCCGCCGGCGGGCGTAACGCAGGGGTATAATTGCCGGCGACGGAGGGACAACCGGCA
rJMFF008D21+ CCATCCGCCGGCGGGCGTAACGCAGGGGTATAATTGCCGGCGACGGAGGGACAACCGGCA
rJMFF035D21+ CCATCCGCCGGCGGGCGTAACGCAGGGGTATAATTGCCGGCGACGGAGGGACAACCGGCA
rJMSF022K16+ CCATCCGCCGGCGGGCGTAACGCAGGGGTATAATTGCCGGCGACGGAGGGACAACCGGCA
                      ____________________________________________________________
consensus CCATCCGCCGGCGGGCGTAACGCAGGGGTATAATTGCCGGCGACGGAGGGACAACCGGCA
 
. : . : . : . : . : . :
rJMFF006G14+ -CAAATCGATTGTTTTATTGGACGCCGTGGATTCTTCATTGGCTAACGTGATTCATCATT
rJMFF008D21+ CCAAATCGATTGTTTTATTGGACGCCGTGGATTCTTCATTGGCTAACGTGATTCATCATT
rJMFF035D21+ -CAAATCGATTGTTTTATTGGACGCCGTGGATTCTTCATTGGCTAACGTGATTCATCATT
rJMSF022K16+ -CAAATCGATTGTTTTATTGGACGCCGTGGATTCTTCATTGGCTAACGTGATTCATCATT
rJMFF013K20+ CAAATCGATTGTTTTATTGGACGCCGTGGATTCTTCATTGGCTAACGTGATTCATCATT
                      ____________________________________________________________
consensus -CAAATCGATTGTTTTATTGGACGCCGTGGATTCTTCATTGGCTAACGTGATTCATCATT
 
. : . : . : . : . : . :
rJMFF006G14+ TCGAGTTGAAGCCGGGGTTCAAGACGGCGAAGGTGAAGCTCGAGGATATGGCGGTGAACC
rJMFF008D21+ TCGAGTTGAAGCCGGGGTTCAAGACGGCGAAGGTGAAGCTCGAGGATATGGCGGTGAACC
rJMFF035D21+ TCGAGTTGAAGCCGGGGTTCAAGACGGCGAAGGTGAAGCTCGAGGATATGGCGGTGAACC
rJMSF022K16+ TCGAGTTGAAGCCGGGGTTCAAGACGGCGAAGGTGAAGCTCGAGGATATGGCGGTGAACC
rJMFF013K20+ TCGAGTTGAAGCCGGGGTTCAAGACGGCGAAGGTGAAGCTCGAGGATATGGCGGTGAACC
                      ____________________________________________________________
consensus TCGAGTTGAAGCCGGGGTTCAAGACGGCGAAGGTGAAGCTCGAGGATATGGCGGTGAACC
 
. : . : . : . : . : . :
rJMFF006G14+ ATTATAAGTATCAGGCGTGGCCGGAGTTTAAGGCGAAGTTCCGGCGGCGGGTTTCGGCGT
rJMFF008D21+ ATTATAAGTATCAGGCGTGGCCGGAGTTTAAGGCGAAGTTCCGGCGGCGGGTTTCGGCGT
rJMFF035D21+ ATTATAAGTATCAGGCGTGGCCGGAGTTTAAGGCGAAGTTCCGGCGGCGGGTTTCGGCGT
rJMSF022K16+ ATTATAAGTATCAGGCGTGGCCGGAGTTTAAGGCGAAGTTCCGGCGGCGGGTTTCGGCGT
rJMFF013K20+ ATTATAAGTATCAGGCGTGGCCGGAGTTTAAGGCGAAGTTCCGGCGGCGGGTTTCGGCGT
                      ____________________________________________________________
consensus ATTATAAGTATCAGGCGTGGCCGGAGTTTAAGGCGAAGTTCCGGCGGCGGGTTTCGGCGT
 
. : . : . : . : . : . :
rJMFF006G14+ ACGTCATTGATTGGACCCGACAGGAGAATCCGAATTCGAATGACCGGACTCCCGGTCTAG
rJMFF008D21+ ACGTCATTGATTGGACCCGACAGGAGAATCCGAATTCGAATGACCGGACTCCCGGTCTAG
rJMFF035D21+ ACGTCATTGATTGGACCCGACAGGAGAATCCGAATTCGAATGACCGGACTCCCGGTCTAG
rJMSF022K16+ ACGTCATTGATTGGACCCGACAGGAGAATCCGAATTCGAATGACCGGACTCCCGGTCTAG
rJMFF013K20+ ACGTCATTGATTGGACCCGACAGGAGAATCCGAATTCGAATGACCGGACTCCCGGTCTAG
                      ____________________________________________________________
consensus ACGTCATTGATTGGACCCGACAGGAGAATCCGAATTCGAATGACCGGACTCCCGGTCTAG
 
. : . : . : . : . : . :
rJMFF006G14+ GGTACAGGCCGGTCGAGCCGGAGGGATGGCCGATGAGATTCTGTGAAGTGTACGACGAGG
rJMFF008D21+ GGTACAGGCCGGTCGAGCCGGAGGGATGGCCGATGAGATTCTGTGAAGTGTACGACGAGG
rJMFF035D21+ GGTACAGGCCGGTCGAGCCGGAGGGATGGCCGATGAGATTCTGTGAAGTGTACGACGAGG
rJMSF022K16+ GGTACAGGCCGGTCGAGCCGGAGGGATGGCCGATGAGATTCTGTGAAGTGTACGACGAGG
rJMFF013K20+ GGTACAGGCCGGTCGAGCCGGAGGGATGGCCGATGAGATTCTGTGAAGTGTACGACGAGG
                      ____________________________________________________________
consensus GGTACAGGCCGGTCGAGCCGGAGGGATGGCCGATGAGATTCTGTGAAGTGTACGACGAGG
 
. : . : . : . : . : . :
rJMFF006G14+ GGTTGAAATTGCTGACGCGGAGATGGTTCGGCGTGGAATCTCCGGCGGGTCTCCGATTGG
rJMFF008D21+ GGTTGAAATTGCTGACGCGGAGATGGTTCGGCGTGGAATCTCCGGCGGGTCTCCGATTGG
rJMFF035D21+ GGTTGAAATTGCTGACGCGGAGATGGTTCGGCGTGGAATCTCCGGCGGGTCTCCGATTGG
rJMSF022K16+ GGTTGAAATTGCTGACGCGGAGATGGTTCGGCGTGGAATCTCCGGCGGGTCTCCGATTGG
rJMFF013K20+ GGTTGAAATTGCTGACGCGGAGATGGTTCGGCGTGGAATCTCCGGCGGGTCTCCGATTGG
                      ____________________________________________________________
consensus GGTTGAAATTGCTGACGCGGAGATGGTTCGGCGTGGAATCTCCGGCGGGTCTCCGATTGG
 
. : . : . : . : . : . :
rJMFF006G14+ CTTGGCAGAGTAGATGATGCCATGATGGTCCAACCTTAAAACCCTATTTAATTAATTAAT
rJMFF008D21+ CTTGGCAGAGTAGATGATGCCATGATGGTCCAACCTTAAAACCCTATTTAATTAATTAAT
rJMFF035D21+ CTTGGCAGAGTAGATGATGCCATGATGGTCCAACCTTAAAACCCTATTTAATTAATTAAT
rJMSF022K16+ CTTGGCAGAGTAGATGATGCCATGATGGTCCAACCTTAAAACCCTATTTAATTAATTAAT
rJMFF013K20+ CTTGGCAGAGTAGATGATGCCATGATGGTCCAACCTTAAAACCCTATTTAATTAATTAAT
                      ____________________________________________________________
consensus CTTGGCAGAGTAGATGATGCCATGATGGTCCAACCTTAAAACCCTATTTAATTAATTAAT
 
. : . : . : . : . : . :
rJMFF006G14+ TTTTTTAAAGATTCTTTTTCTTTTTGGGGTATTTTAATTTACATAATTTTGCTTTAAGGT
rJMFF008D21+ TTTTTTAAAGATTCTTTTTCTTTTTGGGGTATTTTAATTTACATAATTTTGCTTTAAGGT
rJMFF035D21+ TTTTTTAAAGATTCTTTTTCTTTTTGGGGTATTTTAATTTACATAATTTTGCTTTAAGGT
rJMSF022K16+ TTTTTTAAAGATTCTTTTTCTTTTTGGGGTATTTTAATTTACATAATTTTGCTTTAAGGT
rJMFF013K20+ TTTTTTAAAGATTCTTTTTCTTTTTGGGGTATTTTAATTTACATAATTTTGCTTTAAGGT
                      ____________________________________________________________
consensus TTTTTTAAAGATTCTTTTTCTTTTTGGGGTATTTTAATTTACATAATTTTGCTTTAAGGT
 
. : . : . : . : . : . :
rJMFF006G14+ TGTTGTTTTG-TGGATTTTTATTGTAGATATACTGATTATATATTCTTTTTTGTTATTTT
rJMFF008D21+ TGTTGTTTTG-TGGATTTTTATTGTAGATATACTGATTATATATTCTTTTTTGTTATTTT
rJMFF035D21+ TGTTGTTTTGCTGGATTTNTATNGTAGATATACTNANTANATATTCNTTTTTGTTATTTT
rJMSF022K16+ TGTTGTTTTG-TGGATTTTTATTGTAGATATACTGATTATATATTCTTTTTTGTTATTTT
rJMFF013K20+ TGTTGTTTTG-TGGATTTTTATTGTAGATATACTGATTATATATTCTTTTTTGTTATTTT
                      ____________________________________________________________
consensus TGTTGTTTTG-TGGATTTTTATTGTAGATATACTGATTATATATTCTTTTTTGTTATTTT
 
. : . : . : . : . : . :
rJMFF006G14+ AATCC
rJMFF008D21+ AATCCCATAAT
rJMFF035D21+ AATCCCATAAT
rJMSF022K16+ AATCCCATAATTGAATGGGAGATGATAGATAACATTCCTCTGTAGTTCTGTCTAATCCAT
rJMFF013K20+ AATCCCATAATTGAATGGGAGATGATAGATAACATTCTTCTGTAGTTCTGTCTAATCCAT
                      ____________________________________________________________
consensus AATCCCATAATTGAATGGGAGATGATAGATAACATTCTTCTGTAGTTCTGTCTAATCCAT
 
. : . : . : . : . : . :
rJMSF022K16+ TTGTTACTTGTTAGGGGTCAAATACTCAAAT
rJMFF013K20+ TTGTTACTTGTTAGGGGTCAAATACTCAAATTCCTTCCTAATCACAAAAAAAANAAAAAG
                      ____________________________________________________________
consensus TTGTTACTTGTTAGGGGTCAAATACTCAAATTCCTTCCTAATCACAAAAAAAANAAAAAG