clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF006G14 | Sequence | 488 | 002225 (4) | ref|XP_009589638.1| | 4e-16 | PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana tomentosiformis] | 741 | 001074 (5) | ref|XP_009804899.1| | 9e-86 | PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana sylvestris] |
JMFF008D21 | Sequence | 590 | 002225 (4) | ref|XP_009589638.1| | 3e-26 | PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana tomentosiformis] | 720 | 001074 (5) | ref|XP_009804899.1| | 3e-58 | PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana sylvestris] |
JMFF013K20 | Sequence | 480 | 002225 (4) | ref|XP_009589638.1| | 4e-17 | PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana tomentosiformis] | 659 | 001074 (5) | ref|XP_009589638.1| | 2e-53 | PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana tomentosiformis] |
JMFF035D21 | Sequence | 613 | 001074 (5) | ref|XP_009804899.1| | 3e-67 | PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana sylvestris] | |||||
JMSF022K16 | Sequence | 686 | 002225 (4) | ref|XP_009589638.1| | 2e-39 | PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana tomentosiformis] | 816 | 001074 (5) | ref|XP_009804899.1| | 7e-81 | PREDICTED: UPF0392 protein Os08g0121900-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMFF006G14+ CGAGTTTCTGTACTCGAAA
____________________________________________________________
consensus CGAGTTTCTGTACTCGAAA
. : . : . : . : . : . :
rJMFF006G14+ TCGTGGGACGATTTTAAAGAGCCGTCGCGATCGCTGTTACGCTCTGTGTTACCGGAAACC
rJMFF008D21+ AGCCGTCGCGATCGCTGTTACGCTCTGTGTTACCGGAAACC
rJMSF022K16+ AAGAGCCGTCGCGATCGCTGTTACGCTCTGTGTTACCGGAAACC
____________________________________________________________
consensus TCGTGGGACGATTTTAAAGAGCCGTCGCGATCGCTGTTACGCTCTGTGTTACCGGAAACC
. : . : . : . : . : . :
rJMFF006G14+ GGCGACGTGGCGCAACTCAGCGTTCCTTGTCTCGAGTTTGGGCCGTCGAACCGGACTT-C
rJMFF008D21+ GGCGACGTGGCGCAACTCAGCGTTCCTTGTCTCGAGTTTGGGCCGTCGAACCGGACTTCC
rJMFF035D21+ C
rJMSF022K16+ GGCGACGTGGCGCAACTCAGCGTTCCTTGTCTCGAGTTTGGGCCGTCGAACCGGACTT-C
____________________________________________________________
consensus GGCGACGTGGCGCAACTCAGCGTTCCTTGTCTCGAGTTTGGGCCGTCGAACCGGACTT-C
. : . : . : . : . : . :
rJMFF006G14+ CCATCCGCCGGCGGGCGTAACGCAGGGGTATAATTGCCGGCGACGGAGGGACAACCGGCA
rJMFF008D21+ CCATCCGCCGGCGGGCGTAACGCAGGGGTATAATTGCCGGCGACGGAGGGACAACCGGCA
rJMFF035D21+ CCATCCGCCGGCGGGCGTAACGCAGGGGTATAATTGCCGGCGACGGAGGGACAACCGGCA
rJMSF022K16+ CCATCCGCCGGCGGGCGTAACGCAGGGGTATAATTGCCGGCGACGGAGGGACAACCGGCA
____________________________________________________________
consensus CCATCCGCCGGCGGGCGTAACGCAGGGGTATAATTGCCGGCGACGGAGGGACAACCGGCA
. : . : . : . : . : . :
rJMFF006G14+ -CAAATCGATTGTTTTATTGGACGCCGTGGATTCTTCATTGGCTAACGTGATTCATCATT
rJMFF008D21+ CCAAATCGATTGTTTTATTGGACGCCGTGGATTCTTCATTGGCTAACGTGATTCATCATT
rJMFF035D21+ -CAAATCGATTGTTTTATTGGACGCCGTGGATTCTTCATTGGCTAACGTGATTCATCATT
rJMSF022K16+ -CAAATCGATTGTTTTATTGGACGCCGTGGATTCTTCATTGGCTAACGTGATTCATCATT
rJMFF013K20+ CAAATCGATTGTTTTATTGGACGCCGTGGATTCTTCATTGGCTAACGTGATTCATCATT
____________________________________________________________
consensus -CAAATCGATTGTTTTATTGGACGCCGTGGATTCTTCATTGGCTAACGTGATTCATCATT
. : . : . : . : . : . :
rJMFF006G14+ TCGAGTTGAAGCCGGGGTTCAAGACGGCGAAGGTGAAGCTCGAGGATATGGCGGTGAACC
rJMFF008D21+ TCGAGTTGAAGCCGGGGTTCAAGACGGCGAAGGTGAAGCTCGAGGATATGGCGGTGAACC
rJMFF035D21+ TCGAGTTGAAGCCGGGGTTCAAGACGGCGAAGGTGAAGCTCGAGGATATGGCGGTGAACC
rJMSF022K16+ TCGAGTTGAAGCCGGGGTTCAAGACGGCGAAGGTGAAGCTCGAGGATATGGCGGTGAACC
rJMFF013K20+ TCGAGTTGAAGCCGGGGTTCAAGACGGCGAAGGTGAAGCTCGAGGATATGGCGGTGAACC
____________________________________________________________
consensus TCGAGTTGAAGCCGGGGTTCAAGACGGCGAAGGTGAAGCTCGAGGATATGGCGGTGAACC
. : . : . : . : . : . :
rJMFF006G14+ ATTATAAGTATCAGGCGTGGCCGGAGTTTAAGGCGAAGTTCCGGCGGCGGGTTTCGGCGT
rJMFF008D21+ ATTATAAGTATCAGGCGTGGCCGGAGTTTAAGGCGAAGTTCCGGCGGCGGGTTTCGGCGT
rJMFF035D21+ ATTATAAGTATCAGGCGTGGCCGGAGTTTAAGGCGAAGTTCCGGCGGCGGGTTTCGGCGT
rJMSF022K16+ ATTATAAGTATCAGGCGTGGCCGGAGTTTAAGGCGAAGTTCCGGCGGCGGGTTTCGGCGT
rJMFF013K20+ ATTATAAGTATCAGGCGTGGCCGGAGTTTAAGGCGAAGTTCCGGCGGCGGGTTTCGGCGT
____________________________________________________________
consensus ATTATAAGTATCAGGCGTGGCCGGAGTTTAAGGCGAAGTTCCGGCGGCGGGTTTCGGCGT
. : . : . : . : . : . :
rJMFF006G14+ ACGTCATTGATTGGACCCGACAGGAGAATCCGAATTCGAATGACCGGACTCCCGGTCTAG
rJMFF008D21+ ACGTCATTGATTGGACCCGACAGGAGAATCCGAATTCGAATGACCGGACTCCCGGTCTAG
rJMFF035D21+ ACGTCATTGATTGGACCCGACAGGAGAATCCGAATTCGAATGACCGGACTCCCGGTCTAG
rJMSF022K16+ ACGTCATTGATTGGACCCGACAGGAGAATCCGAATTCGAATGACCGGACTCCCGGTCTAG
rJMFF013K20+ ACGTCATTGATTGGACCCGACAGGAGAATCCGAATTCGAATGACCGGACTCCCGGTCTAG
____________________________________________________________
consensus ACGTCATTGATTGGACCCGACAGGAGAATCCGAATTCGAATGACCGGACTCCCGGTCTAG
. : . : . : . : . : . :
rJMFF006G14+ GGTACAGGCCGGTCGAGCCGGAGGGATGGCCGATGAGATTCTGTGAAGTGTACGACGAGG
rJMFF008D21+ GGTACAGGCCGGTCGAGCCGGAGGGATGGCCGATGAGATTCTGTGAAGTGTACGACGAGG
rJMFF035D21+ GGTACAGGCCGGTCGAGCCGGAGGGATGGCCGATGAGATTCTGTGAAGTGTACGACGAGG
rJMSF022K16+ GGTACAGGCCGGTCGAGCCGGAGGGATGGCCGATGAGATTCTGTGAAGTGTACGACGAGG
rJMFF013K20+ GGTACAGGCCGGTCGAGCCGGAGGGATGGCCGATGAGATTCTGTGAAGTGTACGACGAGG
____________________________________________________________
consensus GGTACAGGCCGGTCGAGCCGGAGGGATGGCCGATGAGATTCTGTGAAGTGTACGACGAGG
. : . : . : . : . : . :
rJMFF006G14+ GGTTGAAATTGCTGACGCGGAGATGGTTCGGCGTGGAATCTCCGGCGGGTCTCCGATTGG
rJMFF008D21+ GGTTGAAATTGCTGACGCGGAGATGGTTCGGCGTGGAATCTCCGGCGGGTCTCCGATTGG
rJMFF035D21+ GGTTGAAATTGCTGACGCGGAGATGGTTCGGCGTGGAATCTCCGGCGGGTCTCCGATTGG
rJMSF022K16+ GGTTGAAATTGCTGACGCGGAGATGGTTCGGCGTGGAATCTCCGGCGGGTCTCCGATTGG
rJMFF013K20+ GGTTGAAATTGCTGACGCGGAGATGGTTCGGCGTGGAATCTCCGGCGGGTCTCCGATTGG
____________________________________________________________
consensus GGTTGAAATTGCTGACGCGGAGATGGTTCGGCGTGGAATCTCCGGCGGGTCTCCGATTGG
. : . : . : . : . : . :
rJMFF006G14+ CTTGGCAGAGTAGATGATGCCATGATGGTCCAACCTTAAAACCCTATTTAATTAATTAAT
rJMFF008D21+ CTTGGCAGAGTAGATGATGCCATGATGGTCCAACCTTAAAACCCTATTTAATTAATTAAT
rJMFF035D21+ CTTGGCAGAGTAGATGATGCCATGATGGTCCAACCTTAAAACCCTATTTAATTAATTAAT
rJMSF022K16+ CTTGGCAGAGTAGATGATGCCATGATGGTCCAACCTTAAAACCCTATTTAATTAATTAAT
rJMFF013K20+ CTTGGCAGAGTAGATGATGCCATGATGGTCCAACCTTAAAACCCTATTTAATTAATTAAT
____________________________________________________________
consensus CTTGGCAGAGTAGATGATGCCATGATGGTCCAACCTTAAAACCCTATTTAATTAATTAAT
. : . : . : . : . : . :
rJMFF006G14+ TTTTTTAAAGATTCTTTTTCTTTTTGGGGTATTTTAATTTACATAATTTTGCTTTAAGGT
rJMFF008D21+ TTTTTTAAAGATTCTTTTTCTTTTTGGGGTATTTTAATTTACATAATTTTGCTTTAAGGT
rJMFF035D21+ TTTTTTAAAGATTCTTTTTCTTTTTGGGGTATTTTAATTTACATAATTTTGCTTTAAGGT
rJMSF022K16+ TTTTTTAAAGATTCTTTTTCTTTTTGGGGTATTTTAATTTACATAATTTTGCTTTAAGGT
rJMFF013K20+ TTTTTTAAAGATTCTTTTTCTTTTTGGGGTATTTTAATTTACATAATTTTGCTTTAAGGT
____________________________________________________________
consensus TTTTTTAAAGATTCTTTTTCTTTTTGGGGTATTTTAATTTACATAATTTTGCTTTAAGGT
. : . : . : . : . : . :
rJMFF006G14+ TGTTGTTTTG-TGGATTTTTATTGTAGATATACTGATTATATATTCTTTTTTGTTATTTT
rJMFF008D21+ TGTTGTTTTG-TGGATTTTTATTGTAGATATACTGATTATATATTCTTTTTTGTTATTTT
rJMFF035D21+ TGTTGTTTTGCTGGATTTNTATNGTAGATATACTNANTANATATTCNTTTTTGTTATTTT
rJMSF022K16+ TGTTGTTTTG-TGGATTTTTATTGTAGATATACTGATTATATATTCTTTTTTGTTATTTT
rJMFF013K20+ TGTTGTTTTG-TGGATTTTTATTGTAGATATACTGATTATATATTCTTTTTTGTTATTTT
____________________________________________________________
consensus TGTTGTTTTG-TGGATTTTTATTGTAGATATACTGATTATATATTCTTTTTTGTTATTTT
. : . : . : . : . : . :
rJMFF006G14+ AATCC
rJMFF008D21+ AATCCCATAAT
rJMFF035D21+ AATCCCATAAT
rJMSF022K16+ AATCCCATAATTGAATGGGAGATGATAGATAACATTCCTCTGTAGTTCTGTCTAATCCAT
rJMFF013K20+ AATCCCATAATTGAATGGGAGATGATAGATAACATTCTTCTGTAGTTCTGTCTAATCCAT
____________________________________________________________
consensus AATCCCATAATTGAATGGGAGATGATAGATAACATTCTTCTGTAGTTCTGTCTAATCCAT
. : . : . : . : . : . :
rJMSF022K16+ TTGTTACTTGTTAGGGGTCAAATACTCAAAT
rJMFF013K20+ TTGTTACTTGTTAGGGGTCAAATACTCAAATTCCTTCCTAATCACAAAAAAAANAAAAAG
____________________________________________________________
consensus TTGTTACTTGTTAGGGGTCAAATACTCAAATTCCTTCCTAATCACAAAAAAAANAAAAAG