Contig 001067:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006E14Sequence471002487 (19)sp|Q42961.1|PGKH_TOBAC2e-17RecName: Full=Phosphoglycerate kinase, chloroplastic; Flags: Precursor [Nicotia707001067 (21)ref|XP_008456300.1|3e-98PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]
JMFF012D07Sequence513002487 (19)sp|Q42961.1|PGKH_TOBAC5e-59RecName: Full=Phosphoglycerate kinase, chloroplastic; Flags: Precursor [Nicotia741001067 (21)ref|XP_008456300.1|2e-73PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]
JMFF028J08Sequence565002487 (19)sp|Q42961.1|PGKH_TOBAC1e-77RecName: Full=Phosphoglycerate kinase, chloroplastic; Flags: Precursor [Nicotia679001067 (21)ref|XP_008456300.1|2e-94PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]
JMFF049P04Sequence615002487 (19)sp|Q42961.1|PGKH_TOBAC8e-40RecName: Full=Phosphoglycerate kinase, chloroplastic; Flags: Precursor [Nicotia616001067 (21)gb|AFK48886.1|1e-69unknown [Lotus japonicus]
JMFN012A01Sequence582001067 (21)ref|XP_008456300.1|3e-94PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]
JMFN029O09Sequence605001067 (21)ref|XP_008456300.1|2e-111PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]
JMFN031F05Sequence454001067 (21)gb|AFK48886.1|9e-34unknown [Lotus japonicus]
JMSF001B18Sequence212002487 (19)747001067 (21)ref|XP_008456300.1|7e-114PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]
JMSF002L05Sequence412002487 (19)sp|Q42961.1|PGKH_TOBAC4e-37RecName: Full=Phosphoglycerate kinase, chloroplastic; Flags: Precursor [Nicotia734001067 (21)ref|XP_008456300.1|6e-104PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]
JMSF008F06Sequence436002487 (19)sp|Q42961.1|PGKH_TOBAC1e-41RecName: Full=Phosphoglycerate kinase, chloroplastic; Flags: Precursor [Nicotia765001067 (21)ref|XP_008456300.1|6e-104PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]
JMSF009K24Sequence317002487 (19)sp|Q42961.1|PGKH_TOBAC2e-17RecName: Full=Phosphoglycerate kinase, chloroplastic; Flags: Precursor [Nicotia731001067 (21)ref|XP_008456300.1|2e-121PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]
JMSF009N03Sequence315002487 (19)sp|Q42961.1|PGKH_TOBAC8e-19RecName: Full=Phosphoglycerate kinase, chloroplastic; Flags: Precursor [Nicotia716001067 (21)ref|XP_008456300.1|4e-101PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]
JMSF023M20Sequence674002487 (19)ref|XP_009763674.1|1e-103PREDICTED: phosphoglycerate kinase, chloroplastic [Nicotiana sylvestris]714001067 (21)ref|XP_008456300.1|4e-101PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]
JMSF027H03Sequence659002487 (19)ref|XP_009763674.1|1e-95PREDICTED: phosphoglycerate kinase, chloroplastic [Nicotiana sylvestris]713001067 (21)ref|XP_008456300.1|5e-114PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]
JMSF029C14Sequence601002487 (19)ref|XP_009763674.1|8e-85PREDICTED: phosphoglycerate kinase, chloroplastic [Nicotiana sylvestris]720001067 (21)ref|XP_008456300.1|1e-97PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]
JMSF033N21Sequence600002487 (19)ref|XP_009763674.1|6e-87PREDICTED: phosphoglycerate kinase, chloroplastic [Nicotiana sylvestris]645001067 (21)ref|XP_008456300.1|1e-81PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]
JMSF034O24Sequence601002487 (19)ref|XP_009763674.1|5e-86PREDICTED: phosphoglycerate kinase, chloroplastic [Nicotiana sylvestris]656001067 (21)ref|XP_008456300.1|1e-81PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]
JMSF035H01Sequence654002487 (19)ref|XP_009763674.1|4e-98PREDICTED: phosphoglycerate kinase, chloroplastic [Nicotiana sylvestris]645001067 (21)ref|XP_008456300.1|2e-114PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]
JMSF043C13Sequence771002487 (19)ref|XP_009763674.1|3e-129PREDICTED: phosphoglycerate kinase, chloroplastic [Nicotiana sylvestris]795001067 (21)ref|XP_008456300.1|1e-113PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]
JMSF049D21Sequence600002487 (19)ref|XP_009763674.1|7e-87PREDICTED: phosphoglycerate kinase, chloroplastic [Nicotiana sylvestris]694001067 (21)ref|XP_008456300.1|8e-98PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]
JMSF051O21Sequence679002487 (19)sp|Q42961.1|PGKH_TOBAC2e-51RecName: Full=Phosphoglycerate kinase, chloroplastic; Flags: Precursor [Nicotia731001067 (21)ref|XP_008456300.1|2e-107PREDICTED: phosphoglycerate kinase, chloroplastic [Cucumis melo]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF009K24+ GAGTGANTG
                      ____________________________________________________________
consensus GAGTGANTG
 
. : . : . : . : . : . :
JMFN029O09- GATCTTCACGTTCTA
rJMSF009K24+ AGTCCCTTTGGAGAAATGTGATATCTTGCTTCTGGGAGGAGGTATGATCTTCACGTTCTA
rJMSF051O21+ TA
rJMSF001B18+ GGAGGAGGTATGATCTTCACGTTCTA
rJMSF002L05+ TA
rJMSF027H03+ GGGAGGAGGTATGATCTTCACGTTCTA
rJMSF035H01+ GGGAGGAGGTATGATCTTCACGTTCTA
rJMSF043C13+ GGGAGGAGGTATGATCTTCACGTTCTA
                      ____________________________________________________________
consensus AGTCCCTTTGGAGAAATGTGATATCTTGCTTCTGGGAGGAGGTATGATCTTCACGTTCTA
 
. : . : . : . : . : . :
JMFN029O09- CAAGGCTCAAGGTCTTTCAGTGGGATCATCTCTTGTGGAAGAAGACAAACTAGGTCTTGC
JMFN012A01- TAGGTCTTGC
rJMSF009K24+ CAAGGCTCAAGGTCTTTCAGTGGGATCATCTCTTGTGGAAGAAGACAAACTAGGTCTTGC
rJMSF051O21+ CAAGGCTCAAGGTCTTTCAGTGGGATCATCTCTTGTGGAAGAAGACAAACTAGGTCTTGC
rJMSF001B18+ CAAGGCTCAAGGTCTTTCAGTGGGATCATCTCTTGTGGAAGAAGACAAACTAGGTCTTGC
rJMSF002L05+ CAAGGCTCAAGGTCNTTCAGTGGGATCATCTCTTGTGGAAGAAGACAAACTAGGTCTTGC
rJMSF027H03+ CAAGGCTCAAGGTCTTTCAGTGGGATCATCTCTTGTGGAAGAAGACAAACTAGGTCTTGC
rJMSF035H01+ CAAGGCTCAAGGTCTTTCAGTGGGATCATCTCTTGTGGAAGAAGACAAACTAGGTCTTGC
rJMSF043C13+ CAAGGCTCAAGGTCTTTCAGTGGGATCATCTCTTGTGGAAGAAGACAAACTAGGTCTTGC
rJMSF049D21+ GGAAGAAGACAAACTAGGTCTTGC
rJMFF028J08+ TCTTGC
rJMSF029C14+ GGAAGAAGACAAACTAGGTCTTGC
rJMSF023M20+ GGATCATCTCTTGTGGAAGAAGACAAACTAGGTCTTGC
rJMSF009N03+ GGGATCATCTCTTGTGGAAGAAGACAAACTAGGTCTTGC
rJMFF006E14+ GTGGAAGAAGACAAACTAGGTCTTGC
rJMSF008F06+ GCTCNAGGTCTTTCAGTGGGATCATCTCTTGTGGAAGAAGACAAACTAGGTCTTGC
rJMFF012D07+ TGGAAGAAGACAAACTAGGTCTTGC
                      ____________________________________________________________
consensus CAAGGCTCAAGGTCTTTCAGTGGGATCATCTCTTGTGGAAGAAGACAAACTAGGTCTTGC
 
. : . : . : . : . : . :
JMFN029O09- TACATCACTCCTTGAGAAGGCTAAAGCCAAGGGTGTCAGTCTATTGTTACCTACAGATGT
JMFN012A01- TACATCACTCCTTGAGAAGGCTAAAGCCAAGGGTGTCAGTCTATTGTTACCTACAGATGT
rJMSF009K24+ TACATCACTCCTTGAGAAGGCTAAAGCCAAGGGTGTCAGTCTATTGTTACCTACAGATGT
rJMSF051O21+ TACATCACTCCTTGAGAAGGCTAAAGCCAAGGGTGTCAGTCTATTGTTACCTACAGATGT
rJMSF001B18+ TACATCACTCCTTGAGAAGGCTAAAGCCAAGGGTGTCAGTCTATTGTTACCTACAGATGT
rJMSF002L05+ TACATCACTCCTTGAGAAGGCTAAAGCCAAGGGTGTCAGTCTATTGTTACCTACAGATGT
rJMSF027H03+ TACATCACTCCTTGAGAAGGCTAAAGCCAAGGGTGTCAGTCTATTGTTACCTACAGATGT
rJMSF035H01+ TACATCACTCCTTGAGAAGGCTAAAGCCAAGGGTGTCAGTCTATTGTTACCTACAGATGT
rJMSF043C13+ TACATCACTCCTTGAGAAGGCTAAAGCCAAGGGTGTCAGTCTATTGTTACCTACAGATGT
rJMSF049D21+ TACATCACTCCTTGAGAAGGCTAAAGCCAAGGGTGTCAGTCTATTGTTACCTACAGATGT
rJMFF028J08+ TACATCACTCCTTGAGAAGGCTAAAGCCAAGGGTGTCAGTCTATTGTTACCTACAGATGT
rJMSF033N21+ TACAGATGT
rJMSF029C14+ TACATCACTCCTTGAGAAGGCTAAAGCCAAGGGTGTCAGTCTATTGTTACCTACAGATGT
rJMSF023M20+ TACATCACTCCTTGAGAAGGCTAAAGCCAAGGGTGTCAGTCTATTGTTACCTACAGATGT
rJMSF009N03+ TACATCACTCCTTGAGAAGGCTAAAGCCAAGGGTGTCAGTCTATTGTTACCTACAGATGT
rJMFF006E14+ TACATCACTCCTTGAGAAGGCTAAAGCCAAGGGTGTCAGTCTATTGTTACCTACAGATGT
rJMSF008F06+ TACATCACTCCTTGAGAAGGCTAAAGCCAAGGGTGTCAGTCTATTGTTACCTACAGATGT
rJMSF034O24+ ACAGATGT
rJMFF012D07+ TACATCACTCCTTGAGAAGGCTAAAGCCAAGGGTGTCAGTCTATTGTTACCTACAGATGT
                      ____________________________________________________________
consensus TACATCACTCCTTGAGAAGGCTAAAGCCAAGGGTGTCAGTCTATTGTTACCTACAGATGT
 
. : . : . : . : . : . :
JMFN029O09- GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
JMFN012A01- GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
rJMSF009K24+ GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
rJMSF051O21+ GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
rJMSF001B18+ GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
rJMSF002L05+ GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
rJMSF027H03+ GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
rJMSF035H01+ GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
rJMSF043C13+ GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
rJMSF049D21+ GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
rJMFF028J08+ GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
rJMSF033N21+ GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
rJMSF029C14+ GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
rJMSF023M20+ GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
rJMSF009N03+ GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
rJMFF006E14+ GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
rJMSF008F06+ GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
rJMSF034O24+ GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
rJMFF049P04+ TTGTTCCGGCATCTGCTAT
rJMFF012D07+ GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
                      ____________________________________________________________
consensus GGTTATCGCAGATAAATTTGCTCCTGATGCAAACAGTAAGGTTGTTCCGGCATCTGCTAT
 
. : . : . : . : . : . :
JMFN029O09- CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
JMFN012A01- CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
rJMSF009K24+ CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
rJMSF051O21+ CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
rJMSF001B18+ CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
rJMSF002L05+ CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
rJMSF027H03+ CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
rJMSF035H01+ CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
rJMSF043C13+ CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
rJMSF049D21+ CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
rJMFF028J08+ CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
rJMSF033N21+ CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
rJMSF029C14+ CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
rJMSF023M20+ CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
rJMSF009N03+ CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
rJMFF006E14+ CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
rJMSF008F06+ CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
rJMSF034O24+ CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
rJMFF049P04+ CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
rJMFF012D07+ CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTGCAATGATGC
                      ____________________________________________________________
consensus CCCAGATGGTTGGATGGGATTGGACATTGGACCGGACTCTGTCAAGACTTTCAATGATGC
 
. : . : . : . : . : . :
JMFN029O09- GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
JMFN012A01- GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
rJMSF009K24+ GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
rJMSF051O21+ GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
rJMSF001B18+ GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
rJMSF002L05+ GTTGGAG---ACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
rJMSF027H03+ GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
rJMSF035H01+ GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
rJMSF043C13+ GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
rJMSF049D21+ GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
rJMFF028J08+ GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
rJMSF033N21+ GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
rJMSF029C14+ GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
rJMSF023M20+ GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
rJMSF009N03+ GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
rJMFF006E14+ GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
rJMSF008F06+ GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
rJMSF034O24+ GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
rJMFF049P04+ GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
rJMFF012D07+ GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
                      ____________________________________________________________
consensus GTTGGAGACAACAAAAACTGTGATTTGGAATGGACCAATGGGAGTGTTTGAATTTGACAA
 
. : . : . : . : . : . :
JMFN029O09- ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
JMFN012A01- ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
rJMSF009K24+ ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
rJMSF051O21+ ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
rJMSF001B18+ ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
rJMSF002L05+ ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
rJMSF027H03+ ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
rJMSF035H01+ ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
rJMSF043C13+ ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
rJMSF049D21+ ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
rJMFF028J08+ ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
rJMSF033N21+ ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
rJMSF029C14+ ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
rJMSF023M20+ ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
rJMSF009N03+ ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
rJMFF006E14+ ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
rJMSF008F06+ ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
rJMSF034O24+ ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
JMFN031F05- GGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
rJMFF049P04+ ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
rJMFF012D07+ ATTTGCAGTAGGCACAGAGTCAGT--CAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
                      ____________________________________________________________
consensus ATTTGCAGTAGGCACAGAGTCAGTAGCAAAGAAGCTTGCTGAACTGAGTGGGAAAGGAGT
 
. : . : . : . : . : . :
JMFN029O09- GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
JMFN012A01- GACCACCATTATCGGAGGTGGAGACTCACTTGCAGCAGTACAGAAAGTTGGAGTTGCTAG
rJMSF009K24+ GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
rJMSF051O21+ GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
rJMSF001B18+ GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
rJMSF002L05+ GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
rJMSF027H03+ GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
rJMSF035H01+ GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
rJMSF043C13+ GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
rJMSF049D21+ GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
rJMFF028J08+ GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
rJMSF033N21+ GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
rJMSF029C14+ GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
rJMSF023M20+ GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
rJMSF009N03+ GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
rJMFF006E14+ GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
rJMSF008F06+ GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
rJMSF034O24+ GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
JMFN031F05- GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
rJMFF049P04+ GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
rJMFF012D07+ GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
                      ____________________________________________________________
consensus GACGACCATTATCGGAGGTGGAGACTCAGTTGCAGCAGTAGAGAAAGTTGGAGTTGCTAG
 
. : . : . : . : . : . :
JMFN029O09- CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
JMFN012A01- CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
rJMSF009K24+ CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
rJMSF051O21+ CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
rJMSF001B18+ CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
rJMSF002L05+ CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
rJMSF027H03+ CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
rJMSF035H01+ CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
rJMSF043C13+ CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
rJMSF049D21+ CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
rJMFF028J08+ CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
rJMSF033N21+ CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
rJMSF029C14+ CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
rJMSF023M20+ CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
rJMSF009N03+ CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
rJMFF006E14+ CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
rJMSF008F06+ CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
rJMSF034O24+ CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
JMFN031F05- CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
rJMFF049P04+ CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
rJMFF012D07+ CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
                      ____________________________________________________________
consensus CGTGATGAGCCACATTTCAACCGGAGGTGGTGCTAGTTTGGAGCTGTTGGAAGGAAAAGA
 
. : . : . : . : . : . :
JMFN029O09- GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
JMFN012A01- GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
rJMSF009K24+ GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
rJMSF051O21+ GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
rJMSF001B18+ GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
rJMSF002L05+ GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
rJMSF027H03+ GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
rJMSF035H01+ GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
rJMSF043C13+ GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
rJMSF049D21+ GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
rJMFF028J08+ GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
rJMSF033N21+ GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
rJMSF029C14+ GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
rJMSF023M20+ GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
rJMSF009N03+ GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
rJMFF006E14+ GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
rJMSF008F06+ GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
rJMSF034O24+ GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
JMFN031F05- GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
rJMFF049P04+ GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
rJMFF012D07+ GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
                      ____________________________________________________________
consensus GCTCCCCGGCGTTATTGCTCTTGACGAGGCTGTCCCTGTTGCTGCATGAGATCGATCAGA
 
. : . : . : . : . : . :
JMFN029O09- TCACAATCCGAGAAAGATAAGATTGGGAGAAGAGAGATTTCTTCTTTTGT
JMFN012A01- TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
rJMSF009K24+ TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
rJMSF051O21+ TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
rJMSF001B18+ TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
rJMSF002L05+ TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
rJMSF027H03+ TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
rJMSF035H01+ TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGACCTG
rJMSF043C13+ TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
rJMSF049D21+ TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
rJMFF028J08+ TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
rJMSF033N21+ TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
rJMSF029C14+ TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
rJMSF023M20+ TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
rJMSF009N03+ TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
rJMFF006E14+ TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
rJMSF008F06+ TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
rJMSF034O24+ TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
JMFN031F05- TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
rJMFF049P04+ TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
rJMFF012D07+ TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
                      ____________________________________________________________
consensus TCACAATCCGAGAAAGATAAGATTGGGAGAGAAGAGATTTCTTCTTTTGTAGCTGA-CTG
 
. : . : . : . : . : . :
JMFN012A01- TTGTTAAATAATAAGTATTACCTTACCTTAAAA
rJMSF009K24+ TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACACACCTCCTACCCACCCT
rJMSF051O21+ TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACACACCTCCTACCCACCCT
rJMSF001B18+ TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACACACCTCCTACCCACCCT
rJMSF002L05+ TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACACACCTCCTACCCACCCT
rJMSF027H03+ TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACACACCTCCTACCCACCCT
rJMSF035H01+ TTGTTAAATAATAAGTAT
rJMSF043C13+ TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACACACCTCCTACCCACCCT
rJMSF049D21+ TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACACACCTCCTACCCACCCT
rJMFF028J08+ TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACACACCTCCTACCCACCCT
rJMSF033N21+ TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACACACCTCCTACCCACCCT
rJMSF029C14+ TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACACACCTCCTACCCACCCT
rJMSF023M20+ TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACGCACCTCCTACCCACCCT
rJMSF009N03+ TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACACACCTCCTACCCACCCT
rJMFF006E14+ TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACACACCTCCTACCCACCCT
rJMSF008F06+ TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACACACCTCCTACCCACCCT
rJMSF034O24+ TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACACACCTCCTACCCACCCT
JMFN031F05- TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACACACCTCCTACCCACCCT
rJMFF049P04+ TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACACACCTCCTACCCACCCT
rJMFF012D07+ TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACACACCTCCTACCCACCCT
                      ____________________________________________________________
consensus TTGTTAAATAATAAGTATTACCTTACCTTAAAATTTAAATACACACCTCCTACCCACCCT
 
. : . : . : . : . : . :
rJMSF009K24+ TTT
rJMSF051O21+ TTTGTTTTTTGTCAGT-CAGTGTGTGTTCTGTTCTAAATAACAACCCCCTATCCGATCGA
rJMSF001B18+ TTTGTTTTTTGTCAGTCCAGTGTGTGTTCTGTTCTAAATAACAACCCCCTATCCGATCGA
rJMSF002L05+ TTTGTTTTTTGTCAGT-CAGTGTGTGTTCTGTTCTAAATAACAACCCCCTATCCGATCGA
rJMSF027H03+ TTTGTTTTTTGTCAGT-C
rJMSF043C13+ TTTGTTTTTTGTCAGT-CAGTGTGTGTTCTGTTCTAAATAACAACCCCCTATCCGATCGA
rJMSF049D21+ TTTGTTTTTTGTCAGT-CAGTGTGTGTTCTGTTCTAAATAACAACCCCCTATCCGATCGA
rJMFF028J08+ TTTGTTTTTTGTCAGT-CAGTGTGTGTTCTGTTCTAAATAACAACCCCCTATCCGATCGA
rJMSF033N21+ TTTGTTTTTTGTCAGT-CAGTGTGTGTTCTGTTCTAAATAACAACCCCCTATCCGATCGA
rJMSF029C14+ TTTGTTTTTTGTCAGT-CAGTGTGTGTTCTGTTCTAAATAACAACCCCCTATCCGATCGA
rJMSF023M20+ TTTGTTTTTTGTCAGT-CAGTGTGTGTTCTGTTCTAAATAACAACCCCCTATCCGATCGA
rJMSF009N03+ TTTGTTTTTTGTCAGT-CAGTGTGTGTTCTGTTCTAAATAACAACCCCCTATCCGATCGA
rJMFF006E14+ TTTGTTTTTTGTCAGT-CAGTGTGTGTTCTGTTCTAAATAACAACCCCCTATCCGATCGA
rJMSF008F06+ TTTGTTTTTTGTCAGT-CAGTGTGTGTTCTGTTCTAAATAACAACCCCCTATCCGATCGA
rJMSF034O24+ TTTGTTTTTTGTCAGT-CAGTGTGTGTTCTGTTCTAAATAACAACCCCCTATCCGATCGA
JMFN031F05- TTTGTTTTTTGTCAGT-CAGTGTGTGTTCTGTTCTAAATAACAACCCCCTATCCGATCGA
rJMFF049P04+ TTTGTTTTTTGTCAGT-CAGTGTGTGTTCTGTTCTAAATAACAACCCCCTATCCGATCGA
rJMFF012D07+ TTTGTTTTTTGTCAGT-CAGTGTGTGTTCTGTTCTAAATAACAACCCCCTATCCGATCGA
                      ____________________________________________________________
consensus TTTGTTTTTTGTCAGT-CAGTGTGTGTTCTGTTCTAAATAACAACCCCCTATCCGATCGA
 
. : . : . : . : . : . :
rJMSF051O21+ TGAGCAAACCA
rJMSF001B18+ TG
rJMSF002L05+ TGAGCAAACCAGTC
rJMSF043C13+ TGAGCAAACCAGTCAGTTTGTGTATTTATATATAATAT
rJMSF049D21+ TGAGCAAACCAG
rJMFF028J08+ TGAGCAAACCAGTCA
rJMSF033N21+ TGAGCAAACCAGTCAGTTTGTGTATTTATATATAATAT
rJMSF029C14+ TGAGCAAACCAGTCAGTTTGTGTATTTATATATAATAT
rJMSF023M20+ TGAGCAAACCAGTCAGTT
rJMSF009N03+ TGAGCAAACCAGTCAGTTT
rJMFF006E14+ TGAGCAAACCAGTCAGTTTG
rJMSF008F06+ TGAGCAAACCAGTCAGTTTGTGTATTTATATATAATAT
rJMSF034O24+ TGAGCAAACCAGTCAGTTTGTGTATTTATATATAATATTGTACCTC
JMFN031F05- TGAGCAAACCAGTCAGTTTGTGTATTTATATATAATATTGTACCTC
rJMFF049P04+ TGAGCAAACCAGTCAGTTTGTGTATTTATATATAATATTGTACCTCAATTTGGTAGTCT
rJMFF012D07+ TGAGCAAACCAGTCAGTTTGTGTATTTATATATAATATTGTACCTCAATTTGGTAGTCTA
                      ____________________________________________________________
consensus TGAGCAAACCAGTCAGTTTGTGTATTTATATATAATATTGTACCTCAATTTGGTAGTCTA