| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002E12 | Sequence | 373 | 001066 (7) | ref|XP_010255931.1| | 1e-06 | PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera] | |||||
| JMFF012C23 | Sequence | 411 | 001066 (7) | ref|XP_009781633.1| | 53.1 | PREDICTED: uncharacterized protein LOC104230505 [Nicotiana sylvestris] | |||||
| JMFN008G12 | Sequence | 500 | 001066 (7) | ref|XP_010255931.1| | 2e-06 | PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera] | |||||
| JMFN025N07 | Sequence | 404 | 001066 (7) | ||||||||
| JMFN044H19 | Sequence | 482 | 001066 (7) | ref|XP_010255931.1| | 2e-06 | PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera] | |||||
| JMSF024J03 | Sequence | 477 | 001066 (7) | ref|XP_009781633.1| | 50.8 | PREDICTED: uncharacterized protein LOC104230505 [Nicotiana sylvestris] | 423 | 001066 (7) | ref|XP_009781633.1| | 53.1 | PREDICTED: uncharacterized protein LOC104230505 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMFN044H19+ TGAATTTATTTATTTATTTATAATATAATAA
JMFN025N07+ TGAATTTATTTATTTATTTATAATATAATAA
JMFN008G12+ ATGTGAATTTATTTATTTATTTATAATATAATAA
____________________________________________________________
consensus ATGTGAATTTATTTATTTATTTATAATATAATAA
. : . : . : . : . : . :
JMFN044H19+ TAGGAATAAGAGGGATATAAACCGCCAAGCAATCCACGTCATAGAGCCACTAAGTATTAC
JMFN025N07+ TAGGAATAAGAGGGATATAAACCGCCAAGCAATCCACGTCATAGAGCCACTAAGTATTAC
JMFN008G12+ TAGGAATAAGAGGGATATAAACCGCCAAGCAATCCACGTCATAGAGCCACTAAGTATTAC
JMSF024J03+ TAAACCGCCAAGCAATCCACGTCATAGAGCCACTAAGTATTAC
____________________________________________________________
consensus TAGGAATAAGAGGGATATAAACCGCCAAGCAATCCACGTCATAGAGCCACTAAGTATTAC
. : . : . : . : . : . :
JMFN044H19+ AATAAACTGAAGAACATCAGCCTAAGCAAAAGCAGGCATTATCAAGTCATCAACTCATTT
JMFN025N07+ AATAAACTGAAGAACATCAGCCTAAGCAAAAGCAGGCATTATCAAGTCATCAACTCATTT
JMFN008G12+ AATAAACTGAAGAACATCAGCCTAAGCAAAAGCAGGCATTATCAAGTCATCAACTCATTT
rJMSF024J03- TAAACTGAAGAACATCAGCCTAAGCAAAAGCAGGCATTATCAAGTCATCAACTCATTT
JMSF024J03+ AATAAACTGAAGAACATCAGCCTAAGCAAAAGCAGGCATTATCAAGTCATCAACTCATTT
____________________________________________________________
consensus AATAAACTGAAGAACATCAGCCTAAGCAAAAGCAGGCATTATCAAGTCATCAACTCATTT
. : . : . : . : . : . :
JMFN044H19+ GAAGTATATCTTATTGAGAGAGATGAGCATTAAGCCCAACTCCAATGCAAAAGTTTGGAC
JMFN025N07+ GAAGTATATCTTATTGAGAGAGATGAGCATTAAGCCCAACTCCAATGCAAAAGTTTGGAC
JMFN008G12+ GAAGTATATCTTATTGAGAGAGATGAGCATTAAGCCCAACTCCAATGCAAAAGTTTGGAC
rJMSF024J03- GAAGTATATCTTATTGAGAGAGATGAGCATTAAGCCCAACTCCAATGCAAAAGTTTGGAC
JMSF024J03+ GAAGTATATCTTATTGAGAGAGATGAGCATTAAGCCCAACTCCAATGCAAAAGTTTGGAC
JMFF002E12+ GTATATCTTATTGAGAGAGANGAGCANTAAGCCCAACTCCAATGCAAAAGTTTGGAC
rJMFF012C23- CTTATTGAGAGAGATGAGCATTAAGCCCAACTCCAATGCAAAAGTTTGGAC
____________________________________________________________
consensus GAAGTATATCTTATTGAGAGAGATGAGCATTAAGCCCAACTCCAATGCAAAAGTTTGGAC
. : . : . : . : . : . :
JMFN044H19+ TAACACAAAATACATGGAGAAACCCTCAATCCAGTTGAAGATCAGATCATCAAATAAAGC
JMFN025N07+ TAACACAAAATACATGGAGAAACCCTCAATCCAGTTGAAGATCAGATCATCAAATAAAGC
JMFN008G12+ TAACACAAAATACATGGAGAAACCCTCAATCCAGTTGAAGATCAGATCATCAAATAAAGC
rJMSF024J03- TAACACAAAATACATGGAGAAACCCTCAATCCAGTTGAAGATCAGATCATCAAATAAAGC
JMSF024J03+ TAACACAAAATACATGGAGAAACCCTCAATCCAGTTGAAGATCAGATCATCAAATAAAGC
JMFF002E12+ TAACACAAAATACATGGAGANACCCTCAATCCAGTTGAAGATCAGATCATCAAATAAAGC
rJMFF012C23- TAACACAAAATACATGGAGAAACCCTCAATCCAGTTGAAGATCAGATCATCAAATAAAGC
____________________________________________________________
consensus TAACACAAAATACATGGAGAAACCCTCAATCCAGTTGAAGATCAGATCATCAAATAAAGC
. : . : . : . : . : . :
JMFN044H19+ CGAAACCAAATCCCTTACTACTTTCTTTTCCTACTTGCTTGAAGCCAGTGTCTCTGAGTT
JMFN025N07+ CGAAACCAAATCCCTTACTACTTTCTTTTCCTACTTGCTTGAAGCCAGTGTCTCTGAGTT
JMFN008G12+ CGAAACCAAATCCCTTACTACTTTCTTTTCCTACTTGCTTGAAGCCAGTGTCTCTGAGTT
rJMSF024J03- CGAAACCAAATCCCTTACTACTTTCTTTTCCTACTTGCTTGAAGCCAGTGTCTCTGAGTT
JMSF024J03+ CGAAACCAAATCCCTTACTACTTTCTTTTCCTACTTGCTTGAAGCCAGTGTCTCTGAGTT
JMFF002E12+ CGAAACCAAATCCCTTACTACTTTCTTTTCCTACTTGCTTGAAGCCAGTGTCTCTGAGTT
rJMFF012C23- CGAAACCAAATCCCTTACTACTTTCTTTTCCTACTTGCTTGAAGCCAGTGTCTCTGAGTT
____________________________________________________________
consensus CGAAACCAAATCCCTTACTACTTTCTTTTCCTACTTGCTTGAAGCCAGTGTCTCTGAGTT
. : . : . : . : . : . :
JMFN044H19+ TCTTGGCTTCGGCTTAATGGCTGGATCACTTTGGGAGAAGATAAGGTGTCCCACGACGAC
JMFN025N07+ TCTTGGCTTCGGCTTAATGGCTGGATCACTTTGGGAGAAGATAAGGTGTCCCACGACGAC
JMFN008G12+ TCTTGGCTTCGGCTTAATGGCTGGATCACTTTGGGAGAAGATAAGGTGTCCCACGACGAC
rJMSF024J03- TCTTGGCTTCGGCTTAATGGCTGGATCACTTTGGGAGAAGATAAGGTGTCCCACGACGAC
JMSF024J03+ TCTTGGCTTCGGCTTAATGGCTGGATCACTTTGGGAGAAGATAAGGTGTCCCACGACGAC
JMFF002E12+ TCTTGGCTTCGGCTTAATGGCTGGATCACTTTGGGAGAAGATAAGGTGTCCCACGACGAC
rJMFF012C23- TCTTGGCTTCGGCTTAATGGCTGGATCACTTTGGGAGAAGATAAGGTGTCCCACGACGAC
____________________________________________________________
consensus TCTTGGCTTCGGCTTAATGGCTGGATCACTTTGGGAGAAGATAAGGTGTCCCACGACGAC
. : . : . : . : . : . :
JMFN044H19+ GGCGCCGACGACCGCGCCGACGATAGACGTTGGGCCAGTTAGCAGACTCCACTTTCTGTA
JMFN025N07+ GGCGCCGACGAC
JMFN008G12+ GGCGCCGACGACCGCGCCGACGATAGACGTTGGGCCAGTTAGCAGACTCCACTTTCTGTA
rJMSF024J03- GGCGCCGACGACCGCGCCGACGATAGACGTTGGGCCAGTTAGCAGACTCCACTTTCTGTA
JMSF024J03+ GGCGCCGACGACCGCGCCGACGATAGACGTTGGGCCAGTTAGCAGACTCCACTTTCTGTA
JMFF002E12+ GGCGCCGACGACCGCGCCGACGATAGACGTTGGGCCAGTTAGCAGACTCCACTTTCTGTA
rJMFF012C23- GGCGCCGACGACCGCGCCGACGATAGACGTTGGGCCAGTTAGCAGACTCCACTTTCTGTA
____________________________________________________________
consensus GGCGCCGACGACCGCGCCGACGATAGACGTTGGGCCAGTTAGCAGACTCCACTTTCTGTA
. : . : . : . : . : . :
JMFN044H19+ TATCATCTTCGATTCTTCTTCTTCTCTCTCT
JMFN008G12+ TATCATCTTCGATTCTTCTTCTTCTCTCTCTGTGTCTCTCTGCGAG
rJMSF024J03- TATCATCTTCGATTCTTCTTCTTCTCTCTCTGTGTCTCTCTGCGAGTCGATTCTGGAGGA
JMSF024J03+ TATCATCTTCGATTCTTCTTCTTCTCTCTCTGTGTCTCTCTGCGAGTCGATTCTGGAGGA
JMFF002E12+ TATCATCTTCGATTCTTCTTCTTCTCTCTCTGTGTCTCTCTGCGAGTCGATTCTGGAGGA
rJMFF012C23- TATCATCTTCGATTCTTCTTCTTCTCTCTCTGTGTCTCTCTGCGAGTCGATTCTGGAGGA
____________________________________________________________
consensus TATCATCTTCGATTCTTCTTCTTCTCTCTCTGTGTCTCTCTGCGAGTCGATTCTGGAGGA
. : . : . : . : . : . :
rJMSF024J03- ATGC
JMSF024J03+ ATGC
JMFF002E12+ ATGCGAT
rJMFF012C23- ATGCGATCGNTTTTTTTTTTTTTTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
____________________________________________________________
consensus ATGCGATCGNTTTTTTTTTTTTTTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT