Contig 001062:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001J23Sequence543008998 (9)gb|ACX42226.1|8e-92heat shock protein 90 [Ipomoea nil]776001062 (6)gb|ACX42226.1|2e-86heat shock protein 90 [Ipomoea nil]
JMFF011N08Sequence542008998 (9)gb|ACX42226.1|4e-91heat shock protein 90 [Ipomoea nil]721001062 (6)gb|ACX42226.1|1e-71heat shock protein 90 [Ipomoea nil]
JMFF018C19Sequence569008998 (9)gb|ACX42226.1|6e-97heat shock protein 90 [Ipomoea nil]471001062 (6)gb|ACX42226.1|4e-11heat shock protein 90 [Ipomoea nil]
JMSF034G23Sequence672008998 (9)gb|ACX42226.1|6e-113heat shock protein 90 [Ipomoea nil]610001062 (6)gb|ACX42226.1|1e-62heat shock protein 90 [Ipomoea nil]
JMSF046K13Sequence772001062 (6)gb|ACX42226.1|3e-72heat shock protein 90 [Ipomoea nil]
JMSF049I18Sequence597008998 (9)gb|ACX42226.1|2e-91heat shock protein 90 [Ipomoea nil]699001062 (6)gb|ACX42226.1|9e-92heat shock protein 90 [Ipomoea nil]

Alignment

This contig is upended


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rJMSF049I18+                                                  CTCTGTGACTGGATAAAGCA
rJMSF046K13+                                                       TGACTGGATAAAGCA
rJMFF001J23+                                                                AAAGCA
                      ____________________________________________________________
consensus                                                     CTCTGTGACTGGATAAAGCA
 
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rJMSF049I18+          ACAGCTGGGAGATAAAGTAGCAAAGGTGCAGGTCTCAAAGCGTTTAAGTTCATCT-CCCT
rJMSF046K13+          ACAGCTGGGAGATNAAGTAGCAAAGGTGCAGGTCTCAAAGCGTTTAAGTTCATCTCCCCT
rJMFF001J23+          ACAGCTGGGAGATAAAGTAGCAAAGGTGCAGGTCTCAAAGCGTTTAAGTTCATCT-CCCT
rJMFF011N08+                                                                   CCT
                      ____________________________________________________________
consensus             ACAGCTGGGAGATAAAGTAGCAAAGGTGCAGGTCTCAAAGCGTTTAAGTTCATCT-CCCT
 
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rJMSF049I18+          GTGTGCTTGTCTCTGGCAAGTTTGGGTGGTCCGCAAACATGGAAAGGTTGATGAGAGCTC
rJMSF046K13+          GTGTGCTTGTCTCTGGCAAGTTTGGGTGGTCCGCAAACATGGAAAGGTTGATGAGAGCTC
rJMSF034G23+                                      GTCCGCAAACATGGGAAGGTTGATGAGAGCTC
rJMFF001J23+          GTGTGCTTGTCTCTGGCAAGTTTGGGTGGTCCGCAAACATGGAAAGGTTGATGAGAGCTC
rJMFF011N08+          GTGTGCTTGTCTCTGGCAAGTTTGGGTGGTCCGCAAACATGGAAAGGTTGATGAGAGCTC
                      ____________________________________________________________
consensus             GTGTGCTTGTCTCTGGCAAGTTTGGGTGGTCCGCAAACATGGAAAGGTTGATGAGAGCTC
 
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rJMSF049I18+          AGACCCTCGGGGACACCTCTAGTTTAGAGTTCATGAGGGGACGAAGAATCTTGGAGATTA
rJMSF046K13+          AGACCCTCGGGGACACCTCTAGTTTAGAGTTCATGAGGGGACGAAGAATCTTGGAGATTA
rJMSF034G23+          AGACCCTCGGGGACACCTCTAGTTTAGAGTTCATGAGGGGACGAAGAATCTTGGAGATTA
rJMFF001J23+          AGACCCTCGGGGACACCTCTAGTTTAGAGTTCATGAGGGGACGAAGAATCTTGGAGATTA
rJMFF011N08+          AGACCCTCGGGGACACCTCTAGTTTAGAGTTCATGAGGGGACGAAGAATCTTGGAGATTA
                      ____________________________________________________________
consensus             AGACCCTCGGGGACACCTCTAGTTTAGAGTTCATGAGGGGACGAAGAATCTTGGAGATTA
 
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rJMSF049I18+          ATCCTGATCATCCAATTGTCAAAGATTTACAGGCTGCATGCAAGAATGCACCTGATAGCA
rJMSF046K13+          ATCCTGATCATCCAATTGTCAAAGATTTACAGGCTGCATGCAAGAATGCACCTGATAGCA
rJMSF034G23+          ATCCTGATCATCCAATTGTCAAAGATTTACAGGCTGCATGCAAGAATGCACCTGATAGCA
rJMFF001J23+          ATCCTGATCATCCAATTGTCAAAGATTTACAGGCTGCATGCAAGAATGCACCTGATAGCA
rJMFF011N08+          ATCCTGATCATCCAATTGTCAAAGATTTACAGGCTGCATGCAAGAATGCACCTGATAGCA
                      ____________________________________________________________
consensus             ATCCTGATCATCCAATTGTCAAAGATTTACAGGCTGCATGCAAGAATGCACCTGATAGCA
 
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rJMSF049I18+          CCGATGCCAAGAGAGCTGTGGATCTATTATACGAGACTGCCTTGATTGCCAGTGGATTCT
rJMSF046K13+          CCGATGCCAAGAGAGCTGTGGATCTATTATACGAGACTGCCTTGATTGCCAGTGGATTCT
rJMSF034G23+          CCGATGCCAAGAGAGCTGTGGATCTATTATACGAGACTGCCTTGATTGCCAGTGGATTCT
rJMFF018C19+                                                         GCCAGTGGATTCT
rJMFF001J23+          CCGATGCCAAGAGAGCTGTGGATCTATTATACGAGACTGCCTTGATTGCCAGTGGATTCT
rJMFF011N08+          CCGATGCCAAGAGAGCTGTGGATCTATTATACGAGACTGCCTTGATTGCCAGTGGATTCT
                      ____________________________________________________________
consensus             CCGATGCCAAGAGAGCTGTGGATCTATTATACGAGACTGCCTTGATTGCCAGTGGATTCT
 
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rJMSF049I18+          CTCCCGACAGTCCATCTGAGCTGGGTAACAAGATATACGAGATGATGGCAATGGCTCTTG
rJMSF046K13+          CTCCCGACAGTCCATCTGAGCTGGGTAACAAGATATACGAGATGATGGCAATGGCTCTTG
rJMSF034G23+          CTCCCGACAGTCCATCTGAGCTGGGTAACAAGATATACGAGATGATGGCAATGGCTCTTG
rJMFF018C19+          CTCCNGNCAGTCCATATGAGNTGGGTAACAAGATATACGAGATGATGGCAATGGCTNTTG
rJMFF001J23+          CTCCCGACAGTCCATCTGAGCTGGGTAACAAGATATACGAGATGATGGCAATGGCTCTTG
rJMFF011N08+          CTCCCGACAGTCCATCTGAGCTGGGTAACAAGATATACGAGATGATGGCAATGGCTCTTG
                      ____________________________________________________________
consensus             CTCCCGACAGTCCATCTGAGCTGGGTAACAAGATATACGAGATGATGGCAATGGCTCTTG
 
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rJMSF049I18+          GAGGAAGGTGGGGCAGATTGGAGGAAGACGAAGAAGAAGAAGCCACAGAGGACTCGGGTG
rJMSF046K13+          GAGGAAGGTGGGGCAGATTGGAGGAAGACGAAGAAGAAGAAGCCACAGAGGACTCGGGTG
rJMSF034G23+          GAGGAAGGTGGGGCAGATTGGAGGAAGACGAAGAAGAAGAAGCCACAGAGGACTCGGGTG
rJMFF018C19+          GANGAAGGTGGGGCAGATTGGAGGAAGACGAAGAAGAAGAAGCCACAGAGGACTNGGGTG
rJMFF001J23+          GAGGAAGGTGGGGCAGATTGGAGGAAGACGAAGAAGAAGAAGCCACAGAGGACTCGGGTG
rJMFF011N08+          GAGGAAGGTGGGGCAGATTGGAGGAAGACGAAGAAGAAGAAGCCACAGAGGACTCGGGTG
                      ____________________________________________________________
consensus             GAGGAAGGTGGGGCAGATTGGAGGAAGACGAAGAAGAAGAAGCCACAGAGGACTCGGGTG
 
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rJMSF049I18+          CAAGTTCTCCGGATGAGTCAGAGCCCGAAGTCATCGAGCCATCAGAAGTAAGAACAGAGA
rJMSF046K13+          CAAGTTCTCCGGATGAGTCAGAGCCCGAAGTCATCGAGCCATCAGAAGTAAGAACAGAGA
rJMSF034G23+          CAAGTTCTCCGGATGAGTCAGAGCCCGAAGTCATCGAGCCATCAGAAGTAAGAACAGAGA
rJMFF018C19+          CAAGTTCTCCGGATGAGTCAGAGCCCGAAGTCATCGANCCATCAGAAGTAAGAANTGAGA
rJMFF001J23+          CAAGTTCTCCGGATGAGTCAGAGCCCGAAGTCATCGAGCCATCAGAAGTAAGAACAGAGA
rJMFF011N08+          CAAGTTCTCCGGATGAGTCAGAGCCCGAAGTCATCGAGCCATCAGAAGTAAGAACAGAGA
                      ____________________________________________________________
consensus             CAAGTTCTCCGGATGAGTCAGAGCCCGAAGTCATCGAGCCATCAGAAGTAAGAACAGAGA
 
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rJMSF049I18+          ATGATCCCTGGAGTGATTAAGAAGTGTTTTCTTCCCATATCAGCATTCTTTCAGCCAAAG
rJMSF046K13+          ATGATCCCTGGAGTGATTAAGAAGTGTTTTCTTCCCATATCAGCATTCTTTCAGCCAAAG
rJMSF034G23+          ATGATCCCTGGAGTGATTAAGAAGTGTTTTCTTCCCATATCAGCATTCTTTCAGCCAAAG
rJMFF018C19+          ATGATCCNTGGAGNGATTAAGAAGTGTTTTCTTCCCATATCAGCATTCTTTCANCCAAAG
rJMFF001J23+          ATGATCCCTGGAGTGATTAAGAAGTGTTTTCTTCCCATATCAGCATTCTTTCAGCCAAAG
rJMFF011N08+          ATGATCCCTGGAGTGATTAAGAAGTGTTTTCTTCCCATATCAGCATTCTTTCAGCCAAAG
                      ____________________________________________________________
consensus             ATGATCCCTGGAGTGATTAAGAAGTGTTTTCTTCCCATATCAGCATTCTTTCAGCCAAAG
 
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rJMSF049I18+          CTCCATCCACATTGCTGCTAGGAAGAAATTTTTAGTGTTTTAGAGACACAGCTTCCCAGG
rJMSF046K13+          CTCCATCCACATTGCTGCTAGGAAGAAATTTTTAGTGTTTTAGAGACACAGCTTCCCAGG
rJMSF034G23+          CTCCATCCACATTGCTGCTAGGAAGAAATTTTTAGTGTTTTAGAGACACAGCTTCCCAGG
rJMFF018C19+          CTCCATCCNCATTGCTNNTAGGAAGAAATTTNTAGTGTTTTAGAGACACAGCTTCCCAGG
rJMFF001J23+          CTCCATCCACATTGCTGCTAGGAAGAAATTTTTAGTGTTTTAGAGACACAGCTTCCCAGG
rJMFF011N08+          CTCCATCCACATTGCTGCTAGGAAGAAATTTTTAGTGTTTTAGAGACACAGCTTCCCAGG
                      ____________________________________________________________
consensus             CTCCATCCACATTGCTGCTAGGAAGAAATTTTTAGTGTTTTAGAGACACAGCTTCCCAGG
 
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rJMSF049I18+          GTGGAAAACTTGCAAAATCACAATTGGATAGGAAATTTTCATATTTCTATCACAATAGAA
rJMSF046K13+          GTGGAAAACTTGCAAAATCACAATTGGATAGGAAATTTTCATATTTCTATCACAATAGAA
rJMSF034G23+          GTGGAAAACTTGCAAAATCACAATTGGATAGGAAATTTTCATATTTCTATCACAATAGAA
rJMFF018C19+          GTGGAAAACTNGCAAAATCACAATTGGATAGGAAATTNTCATATTTCTATCNCAATAGAN
rJMFF001J23+          GTGGAAAACTTGCAAAATCACAATTGGATAGGAAATTTTCATATTTCTATCACAATAGAA
rJMFF011N08+          GTGGAAAACTTGCAAAATCACAATTGGATAGGAAATTTTCATATTTCTATCACAATAGAA
                      ____________________________________________________________
consensus             GTGGAAAACTTGCAAAATCACAATTGGATAGGAAATTTTCATATTTCTATCACAATAGAA
 
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rJMSF049I18+          AAGAGGTGGAAAAGGAGTGT                                        
rJMSF046K13+          AAGAGGTGGAAAAGGATGTGTTGTATTGGAGGAAATTTTTGGGTGAACGAGATGATTAGA
rJMSF034G23+          AAGAGGTGGAAAAGGA-GTGTTGTATTGGAGGAAATTTT                     
rJMFF018C19+          AAGAGGTGGAAAAGGA-GTGTNGTATTGGAGGAAATTTNTGGGTGAA-GAGATGANTAGA
rJMFF001J23+          AAGAGGTGGAAAAGGA-GTGTTGTATTGGAGGAAATTTTTGGGTGAA-GAGATGATTAGA
rJMFF011N08+          AAGAGGTGGAAAAGGA-GTGTTGTATTGGAGGAAATTTTTGGGTGAA-GAGATGATTAGA
                      ____________________________________________________________
consensus             AAGAGGTGGAAAAGGA-GTGTTGTATTGGAGGAAATTTTTGGGTGAA-GAGATGATTAGA
 
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rJMSF046K13+          GAGATCTTATTTTTGTGACAAAACT                                   
rJMFF018C19+          GAGATNTTATTTTTGTGACAAAACT                                   
rJMFF001J23+          GAGATCTTATTTTTGTGACAAAACT                                   
rJMFF011N08+          GAGATCTTATTTTTGTGACAAAACTTGTTTGATCCCATGTTTGGAGTGCCCTTCAATAAT
                      ____________________________________________________________
consensus             GAGATCTTATTTTTGTGACAAAACTTGTTTGATCCCATGTTTGGAGTGCCCTTCAATAAT