Contig 001062:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001J23Sequence543008998 (9)gb|ACX42226.1|8e-92heat shock protein 90 [Ipomoea nil]776001062 (6)gb|ACX42226.1|2e-86heat shock protein 90 [Ipomoea nil]
JMFF011N08Sequence542008998 (9)gb|ACX42226.1|4e-91heat shock protein 90 [Ipomoea nil]721001062 (6)gb|ACX42226.1|1e-71heat shock protein 90 [Ipomoea nil]
JMFF018C19Sequence569008998 (9)gb|ACX42226.1|6e-97heat shock protein 90 [Ipomoea nil]471001062 (6)gb|ACX42226.1|4e-11heat shock protein 90 [Ipomoea nil]
JMSF034G23Sequence672008998 (9)gb|ACX42226.1|6e-113heat shock protein 90 [Ipomoea nil]610001062 (6)gb|ACX42226.1|1e-62heat shock protein 90 [Ipomoea nil]
JMSF046K13Sequence772001062 (6)gb|ACX42226.1|3e-72heat shock protein 90 [Ipomoea nil]
JMSF049I18Sequence597008998 (9)gb|ACX42226.1|2e-91heat shock protein 90 [Ipomoea nil]699001062 (6)gb|ACX42226.1|9e-92heat shock protein 90 [Ipomoea nil]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF049I18+ CTCTGTGACTGGATAAAGCA
rJMSF046K13+ TGACTGGATAAAGCA
rJMFF001J23+ AAAGCA
                      ____________________________________________________________
consensus CTCTGTGACTGGATAAAGCA
 
. : . : . : . : . : . :
rJMSF049I18+ ACAGCTGGGAGATAAAGTAGCAAAGGTGCAGGTCTCAAAGCGTTTAAGTTCATCT-CCCT
rJMSF046K13+ ACAGCTGGGAGATNAAGTAGCAAAGGTGCAGGTCTCAAAGCGTTTAAGTTCATCTCCCCT
rJMFF001J23+ ACAGCTGGGAGATAAAGTAGCAAAGGTGCAGGTCTCAAAGCGTTTAAGTTCATCT-CCCT
rJMFF011N08+ CCT
                      ____________________________________________________________
consensus ACAGCTGGGAGATAAAGTAGCAAAGGTGCAGGTCTCAAAGCGTTTAAGTTCATCT-CCCT
 
. : . : . : . : . : . :
rJMSF049I18+ GTGTGCTTGTCTCTGGCAAGTTTGGGTGGTCCGCAAACATGGAAAGGTTGATGAGAGCTC
rJMSF046K13+ GTGTGCTTGTCTCTGGCAAGTTTGGGTGGTCCGCAAACATGGAAAGGTTGATGAGAGCTC
rJMSF034G23+ GTCCGCAAACATGGGAAGGTTGATGAGAGCTC
rJMFF001J23+ GTGTGCTTGTCTCTGGCAAGTTTGGGTGGTCCGCAAACATGGAAAGGTTGATGAGAGCTC
rJMFF011N08+ GTGTGCTTGTCTCTGGCAAGTTTGGGTGGTCCGCAAACATGGAAAGGTTGATGAGAGCTC
                      ____________________________________________________________
consensus GTGTGCTTGTCTCTGGCAAGTTTGGGTGGTCCGCAAACATGGAAAGGTTGATGAGAGCTC
 
. : . : . : . : . : . :
rJMSF049I18+ AGACCCTCGGGGACACCTCTAGTTTAGAGTTCATGAGGGGACGAAGAATCTTGGAGATTA
rJMSF046K13+ AGACCCTCGGGGACACCTCTAGTTTAGAGTTCATGAGGGGACGAAGAATCTTGGAGATTA
rJMSF034G23+ AGACCCTCGGGGACACCTCTAGTTTAGAGTTCATGAGGGGACGAAGAATCTTGGAGATTA
rJMFF001J23+ AGACCCTCGGGGACACCTCTAGTTTAGAGTTCATGAGGGGACGAAGAATCTTGGAGATTA
rJMFF011N08+ AGACCCTCGGGGACACCTCTAGTTTAGAGTTCATGAGGGGACGAAGAATCTTGGAGATTA
                      ____________________________________________________________
consensus AGACCCTCGGGGACACCTCTAGTTTAGAGTTCATGAGGGGACGAAGAATCTTGGAGATTA
 
. : . : . : . : . : . :
rJMSF049I18+ ATCCTGATCATCCAATTGTCAAAGATTTACAGGCTGCATGCAAGAATGCACCTGATAGCA
rJMSF046K13+ ATCCTGATCATCCAATTGTCAAAGATTTACAGGCTGCATGCAAGAATGCACCTGATAGCA
rJMSF034G23+ ATCCTGATCATCCAATTGTCAAAGATTTACAGGCTGCATGCAAGAATGCACCTGATAGCA
rJMFF001J23+ ATCCTGATCATCCAATTGTCAAAGATTTACAGGCTGCATGCAAGAATGCACCTGATAGCA
rJMFF011N08+ ATCCTGATCATCCAATTGTCAAAGATTTACAGGCTGCATGCAAGAATGCACCTGATAGCA
                      ____________________________________________________________
consensus ATCCTGATCATCCAATTGTCAAAGATTTACAGGCTGCATGCAAGAATGCACCTGATAGCA
 
. : . : . : . : . : . :
rJMSF049I18+ CCGATGCCAAGAGAGCTGTGGATCTATTATACGAGACTGCCTTGATTGCCAGTGGATTCT
rJMSF046K13+ CCGATGCCAAGAGAGCTGTGGATCTATTATACGAGACTGCCTTGATTGCCAGTGGATTCT
rJMSF034G23+ CCGATGCCAAGAGAGCTGTGGATCTATTATACGAGACTGCCTTGATTGCCAGTGGATTCT
rJMFF018C19+ GCCAGTGGATTCT
rJMFF001J23+ CCGATGCCAAGAGAGCTGTGGATCTATTATACGAGACTGCCTTGATTGCCAGTGGATTCT
rJMFF011N08+ CCGATGCCAAGAGAGCTGTGGATCTATTATACGAGACTGCCTTGATTGCCAGTGGATTCT
                      ____________________________________________________________
consensus CCGATGCCAAGAGAGCTGTGGATCTATTATACGAGACTGCCTTGATTGCCAGTGGATTCT
 
. : . : . : . : . : . :
rJMSF049I18+ CTCCCGACAGTCCATCTGAGCTGGGTAACAAGATATACGAGATGATGGCAATGGCTCTTG
rJMSF046K13+ CTCCCGACAGTCCATCTGAGCTGGGTAACAAGATATACGAGATGATGGCAATGGCTCTTG
rJMSF034G23+ CTCCCGACAGTCCATCTGAGCTGGGTAACAAGATATACGAGATGATGGCAATGGCTCTTG
rJMFF018C19+ CTCCNGNCAGTCCATATGAGNTGGGTAACAAGATATACGAGATGATGGCAATGGCTNTTG
rJMFF001J23+ CTCCCGACAGTCCATCTGAGCTGGGTAACAAGATATACGAGATGATGGCAATGGCTCTTG
rJMFF011N08+ CTCCCGACAGTCCATCTGAGCTGGGTAACAAGATATACGAGATGATGGCAATGGCTCTTG
                      ____________________________________________________________
consensus CTCCCGACAGTCCATCTGAGCTGGGTAACAAGATATACGAGATGATGGCAATGGCTCTTG
 
. : . : . : . : . : . :
rJMSF049I18+ GAGGAAGGTGGGGCAGATTGGAGGAAGACGAAGAAGAAGAAGCCACAGAGGACTCGGGTG
rJMSF046K13+ GAGGAAGGTGGGGCAGATTGGAGGAAGACGAAGAAGAAGAAGCCACAGAGGACTCGGGTG
rJMSF034G23+ GAGGAAGGTGGGGCAGATTGGAGGAAGACGAAGAAGAAGAAGCCACAGAGGACTCGGGTG
rJMFF018C19+ GANGAAGGTGGGGCAGATTGGAGGAAGACGAAGAAGAAGAAGCCACAGAGGACTNGGGTG
rJMFF001J23+ GAGGAAGGTGGGGCAGATTGGAGGAAGACGAAGAAGAAGAAGCCACAGAGGACTCGGGTG
rJMFF011N08+ GAGGAAGGTGGGGCAGATTGGAGGAAGACGAAGAAGAAGAAGCCACAGAGGACTCGGGTG
                      ____________________________________________________________
consensus GAGGAAGGTGGGGCAGATTGGAGGAAGACGAAGAAGAAGAAGCCACAGAGGACTCGGGTG
 
. : . : . : . : . : . :
rJMSF049I18+ CAAGTTCTCCGGATGAGTCAGAGCCCGAAGTCATCGAGCCATCAGAAGTAAGAACAGAGA
rJMSF046K13+ CAAGTTCTCCGGATGAGTCAGAGCCCGAAGTCATCGAGCCATCAGAAGTAAGAACAGAGA
rJMSF034G23+ CAAGTTCTCCGGATGAGTCAGAGCCCGAAGTCATCGAGCCATCAGAAGTAAGAACAGAGA
rJMFF018C19+ CAAGTTCTCCGGATGAGTCAGAGCCCGAAGTCATCGANCCATCAGAAGTAAGAANTGAGA
rJMFF001J23+ CAAGTTCTCCGGATGAGTCAGAGCCCGAAGTCATCGAGCCATCAGAAGTAAGAACAGAGA
rJMFF011N08+ CAAGTTCTCCGGATGAGTCAGAGCCCGAAGTCATCGAGCCATCAGAAGTAAGAACAGAGA
                      ____________________________________________________________
consensus CAAGTTCTCCGGATGAGTCAGAGCCCGAAGTCATCGAGCCATCAGAAGTAAGAACAGAGA
 
. : . : . : . : . : . :
rJMSF049I18+ ATGATCCCTGGAGTGATTAAGAAGTGTTTTCTTCCCATATCAGCATTCTTTCAGCCAAAG
rJMSF046K13+ ATGATCCCTGGAGTGATTAAGAAGTGTTTTCTTCCCATATCAGCATTCTTTCAGCCAAAG
rJMSF034G23+ ATGATCCCTGGAGTGATTAAGAAGTGTTTTCTTCCCATATCAGCATTCTTTCAGCCAAAG
rJMFF018C19+ ATGATCCNTGGAGNGATTAAGAAGTGTTTTCTTCCCATATCAGCATTCTTTCANCCAAAG
rJMFF001J23+ ATGATCCCTGGAGTGATTAAGAAGTGTTTTCTTCCCATATCAGCATTCTTTCAGCCAAAG
rJMFF011N08+ ATGATCCCTGGAGTGATTAAGAAGTGTTTTCTTCCCATATCAGCATTCTTTCAGCCAAAG
                      ____________________________________________________________
consensus ATGATCCCTGGAGTGATTAAGAAGTGTTTTCTTCCCATATCAGCATTCTTTCAGCCAAAG
 
. : . : . : . : . : . :
rJMSF049I18+ CTCCATCCACATTGCTGCTAGGAAGAAATTTTTAGTGTTTTAGAGACACAGCTTCCCAGG
rJMSF046K13+ CTCCATCCACATTGCTGCTAGGAAGAAATTTTTAGTGTTTTAGAGACACAGCTTCCCAGG
rJMSF034G23+ CTCCATCCACATTGCTGCTAGGAAGAAATTTTTAGTGTTTTAGAGACACAGCTTCCCAGG
rJMFF018C19+ CTCCATCCNCATTGCTNNTAGGAAGAAATTTNTAGTGTTTTAGAGACACAGCTTCCCAGG
rJMFF001J23+ CTCCATCCACATTGCTGCTAGGAAGAAATTTTTAGTGTTTTAGAGACACAGCTTCCCAGG
rJMFF011N08+ CTCCATCCACATTGCTGCTAGGAAGAAATTTTTAGTGTTTTAGAGACACAGCTTCCCAGG
                      ____________________________________________________________
consensus CTCCATCCACATTGCTGCTAGGAAGAAATTTTTAGTGTTTTAGAGACACAGCTTCCCAGG
 
. : . : . : . : . : . :
rJMSF049I18+ GTGGAAAACTTGCAAAATCACAATTGGATAGGAAATTTTCATATTTCTATCACAATAGAA
rJMSF046K13+ GTGGAAAACTTGCAAAATCACAATTGGATAGGAAATTTTCATATTTCTATCACAATAGAA
rJMSF034G23+ GTGGAAAACTTGCAAAATCACAATTGGATAGGAAATTTTCATATTTCTATCACAATAGAA
rJMFF018C19+ GTGGAAAACTNGCAAAATCACAATTGGATAGGAAATTNTCATATTTCTATCNCAATAGAN
rJMFF001J23+ GTGGAAAACTTGCAAAATCACAATTGGATAGGAAATTTTCATATTTCTATCACAATAGAA
rJMFF011N08+ GTGGAAAACTTGCAAAATCACAATTGGATAGGAAATTTTCATATTTCTATCACAATAGAA
                      ____________________________________________________________
consensus GTGGAAAACTTGCAAAATCACAATTGGATAGGAAATTTTCATATTTCTATCACAATAGAA
 
. : . : . : . : . : . :
rJMSF049I18+ AAGAGGTGGAAAAGGAGTGT
rJMSF046K13+ AAGAGGTGGAAAAGGATGTGTTGTATTGGAGGAAATTTTTGGGTGAACGAGATGATTAGA
rJMSF034G23+ AAGAGGTGGAAAAGGA-GTGTTGTATTGGAGGAAATTTT
rJMFF018C19+ AAGAGGTGGAAAAGGA-GTGTNGTATTGGAGGAAATTTNTGGGTGAA-GAGATGANTAGA
rJMFF001J23+ AAGAGGTGGAAAAGGA-GTGTTGTATTGGAGGAAATTTTTGGGTGAA-GAGATGATTAGA
rJMFF011N08+ AAGAGGTGGAAAAGGA-GTGTTGTATTGGAGGAAATTTTTGGGTGAA-GAGATGATTAGA
                      ____________________________________________________________
consensus AAGAGGTGGAAAAGGA-GTGTTGTATTGGAGGAAATTTTTGGGTGAA-GAGATGATTAGA
 
. : . : . : . : . : . :
rJMSF046K13+ GAGATCTTATTTTTGTGACAAAACT
rJMFF018C19+ GAGATNTTATTTTTGTGACAAAACT
rJMFF001J23+ GAGATCTTATTTTTGTGACAAAACT
rJMFF011N08+ GAGATCTTATTTTTGTGACAAAACTTGTTTGATCCCATGTTTGGAGTGCCCTTCAATAAT
                      ____________________________________________________________
consensus GAGATCTTATTTTTGTGACAAAACTTGTTTGATCCCATGTTTGGAGTGCCCTTCAATAAT