Contig 001061:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011L10Sequence553006750 (2)ref|XP_011086689.1|6e-25PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Sesamum indicum]736001061 (2)ref|XP_004160694.1|8e-85PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor sigB-like [Cucumis
JMSF051H14Sequence715006750 (2)ref|XP_009761599.1|8e-32PREDICTED: RNA polymerase sigma factor sigB-like [Nicotiana sylvestris]792001061 (2)ref|XP_009408073.1|4e-123PREDICTED: RNA polymerase sigma factor sigB-like [Musa acuminata subsp. malacce

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF051H14+ ATTCANGAAGGATGTCGAGGGCTAGTTAAAAGTGCTGAGAAGTTTGATGCTT
                      ____________________________________________________________
consensus ATTCANGAAGGATGTCGAGGGCTAGTTAAAAGTGCTGAGAAGTTTGATGCTT
 
. : . : . : . : . : . :
rJMSF051H14+ CAAAGGGGTTCAGGTTCTCCACATATGCTTACTGGTGGATTAAGCAGGCAGTTAGAAGAT
                      ____________________________________________________________
consensus CAAAGGGGTTCAGGTTCTCCACATATGCTTACTGGTGGATTAAGCAGGCAGTTAGAAGAT
 
. : . : . : . : . : . :
rJMSF051H14+ CTCTTTCACATCAATCCCGGACAATTCGACTGCCCTTGCACATGGTTGATGCAACATATA
rJMFF011L10+ GTTGATGCAACATATA
                      ____________________________________________________________
consensus CTCTTTCACATCAATCCCGGACAATTCGACTGCCCTTGCACATGGTTGATGCAACATATA
 
. : . : . : . : . : . :
rJMSF051H14+ GAGTAAAGGAGGCAAGAAAGCAATTGTATATGGAAAATGGTAGGCATCCTGATGATGAAG
rJMFF011L10+ GAGTAAAGGAGGCAAGAAAGCAATTGTATATGGAAAATGGTAGGCATCNTGATGATGAAG
                      ____________________________________________________________
consensus GAGTAAAGGAGGCAAGAAAGCAATTGTATATGGAAAATGGTAGGCATCCTGATGATGAAG
 
. : . : . : . : . : . :
rJMSF051H14+ AAGTAGCAGAGGCAGCAGGTTTGTCGATGAAGAGGCTCACTGCTGTGATGCTAACTCCTA
rJMFF011L10+ AAGTAGCAGAGGCAGCAGGTTTGTCGATGAAGAGGCTCACTGCTGTGATGCTAACTCCTA
                      ____________________________________________________________
consensus AAGTAGCAGAGGCAGCAGGTTTGTCGATGAAGAGGCTCACTGCTGTGATGCTAACTCCTA
 
. : . : . : . : . : . :
rJMSF051H14+ AAGCTCCGAGATCTCTTGATCAGAAAATGGGAATCAATATGGATCTCAAACCTTCGGAAG
rJMFF011L10+ AAGCTCCGAGATCTCTTGATCAGAAAATGGGAATCAATATGGATCTCAAACCTTCGGAAG
                      ____________________________________________________________
consensus AAGCTCCGAGATCTCTTGATCAGAAAATGGGAATCAATATGGATCTCAAACCTTCGGAAG
 
. : . : . : . : . : . :
rJMSF051H14+ TGATTGCAGATCCCGACGCTGAAACATCTGAAGACTTTCTGATCAAGCAGCTGATGAGAG
rJMFF011L10+ TGATTGCAGATCCCGACGCTGAAACATCTGAAGACTTTCTGATCAAGCAGCTGATGAGAG
                      ____________________________________________________________
consensus TGATTGCAGATCCCGACGCTGAAACATCTGAAGACTTTCTGATCAAGCAGCTGATGAGAG
 
. : . : . : . : . : . :
rJMSF051H14+ AGGACCTCGAGAAGGTCTTGGACACTTTAAATCCGAGGGAGAAGCAAGTCATAAGATGGC
rJMFF011L10+ AGGACCTCGAGAAGGTCTTGGACACTTTAAATCCGAGGGAGAAGCAAGTCATAAGATGGC
                      ____________________________________________________________
consensus AGGACCTCGAGAAGGTCTTGGACACTTTAAATCCGAGGGAGAAGCAAGTCATAAGATGGC
 
. : . : . : . : . : . :
rJMSF051H14+ GTTTTGGAATGGAGGATGGAAGGATGAAAACATTACAAGAGATCGGGGAATTAATGAACG
rJMFF011L10+ GTTTTGGAATGGAGGATGGAAGGATGAAAACATTACAAGAGATCGGGGAATTAATGAACG
                      ____________________________________________________________
consensus GTTTTGGAATGGAGGATGGAAGGATGAAAACATTACAAGAGATCGGGGAATTAATGAACG
 
. : . : . : . : . : . :
rJMSF051H14+ TGAGCCGGGAGAGAATCCGACAGATTGAGATATGTGCGTTCCGTAAGTTGAAGAGCAAGA
rJMFF011L10+ TGAGCCGGGAGAGAATCCGACAGATTGAGATATGTGCGTTCCGTAAGTTGAAGAGCAAGA
                      ____________________________________________________________
consensus TGAGCCGGGAGAGAATCCGACAGATTGAGATATGTGCGTTCCGTAAGTTGAAGAGCAAGA
 
. : . : . : . : . : . :
rJMSF051H14+ AAAGAACAGAACACTTTAAAAAGTACTTAACTGCTTAAATTTCCATACATCCAGAATCTA
rJMFF011L10+ AAAGAACAGAACACTTTAAAAAGTACTTAACTGCTTAAATTTCCATACATCCAGAATCTA
                      ____________________________________________________________
consensus AAAGAACAGAACACTTTAAAAAGTACTTAACTGCTTAAATTTCCATACATCCAGAATCTA
 
. : . : . : . : . : . :
rJMSF051H14+ GGTTTAGCTTCTGCTGCTCACCATCAATTGGGGTTGCATTTGTTTGGTTGAAGTCGGGCT
rJMFF011L10+ GGTTTAGCTTCTGCTGCTCACCATCAATTGGGGTTGCATTTGTTTGGTTGAAGTCGGGCT
                      ____________________________________________________________
consensus GGTTTAGCTTCTGCTGCTCACCATCAATTGGGGTTGCATTTGTTTGGTTGAAGTCGGGCT
 
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rJMSF051H14+ CGTTTAACGCATTTATTCTTCTTAAATGATTCCTTTTCTGCCTAGCCCTCTTTCCTTTCA
rJMFF011L10+ CGTTTAACGCATTTATTCTTCTTAAATGATTCCTTTTCTGCCTAGCCCTCTTTCCTTTCA
                      ____________________________________________________________
consensus CGTTTAACGCATTTATTCTTCTTAAATGATTCCTTTTCTGCCTAGCCCTCTTTCCTTTCA
 
. : . : . : . : . : . :
rJMSF051H14+ CAGCAGAAC
rJMFF011L10+ CAGCAGAACTGTAGCATAACACTGCAAATGGTTTGTGCATAATAGTATATTTCAGAAACT
                      ____________________________________________________________
consensus CAGCAGAACTGTAGCATAACACTGCAAATGGTTTGTGCATAATAGTATATTTCAGAAACT
 
. : . : . : . : . : . :
rJMFF011L10+ TTTGTTCAGATTTAGCTCATTGGAGTTGAATCATGTATGTGGAACAGATGTTAGTTCCAG
                      ____________________________________________________________
consensus TTTGTTCAGATTTAGCTCATTGGAGTTGAATCATGTATGTGGAACAGATGTTAGTTCCAG