Contig 001056:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011B22Sequence574001056 (10)ref|XP_009589988.1|3e-48PREDICTED: double-stranded RNA-binding protein 1-like isoform X1 [Nicotiana tom757001056 (10)ref|XP_010319634.1|1e-04PREDICTED: double-stranded RNA-binding protein 1 isoform X2 [Solanum lycopersic
JMFN013J15Sequence510001056 (10)ref|XP_009589989.1|4e-05PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Nicotiana tom
JMFN040G14Sequence604001056 (10)
JMSF009B05Sequence275000483 (7)ref|XP_009768744.1|2e-25PREDICTED: double-stranded RNA-binding protein 3-like [Nicotiana sylvestris]783001056 (10)ref|XP_009589989.1|6e-13PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Nicotiana tom
JMSF009B06Sequence231002188 (3)ref|XP_009610808.1|2e-14PREDICTED: autophagy-related protein 13 [Nicotiana tomentosiformis] ref|XP_00961101001056 (10)
JMSF016N16Sequence541000483 (7)ref|XP_009768744.1|3e-24PREDICTED: double-stranded RNA-binding protein 3-like [Nicotiana sylvestris]761001056 (10)ref|XP_009589989.1|5e-10PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Nicotiana tom
JMSF027I12Sequence650000483 (7)ref|XP_009768744.1|3e-24PREDICTED: double-stranded RNA-binding protein 3-like [Nicotiana sylvestris]780001056 (10)ref|XP_009589989.1|3e-12PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Nicotiana tom
JMSF050D13Sequence660000483 (7)ref|XP_009768744.1|4e-24PREDICTED: double-stranded RNA-binding protein 3-like [Nicotiana sylvestris]759001056 (10)ref|XP_010319634.1|6e-10PREDICTED: double-stranded RNA-binding protein 1 isoform X2 [Solanum lycopersic
JMSF051D13Sequence656000483 (7)ref|XP_009768744.1|3e-24PREDICTED: double-stranded RNA-binding protein 3-like [Nicotiana sylvestris]760001056 (10)ref|XP_010319634.1|5e-09PREDICTED: double-stranded RNA-binding protein 1 isoform X2 [Solanum lycopersic

Alignment

This contig is upended


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JMFF011B22-               CCATACTAAAAATGAAATTGCAGGTCGAAACAATGAACCGAATTCACAAACATCTG
                      ____________________________________________________________
consensus                 CCATACTAAAAATGAAATTGCAGGTCGAAACAATGAACCGAATTCACAAACATCTG
 
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JMFF011B22-           GGTTTGGTTCAACACCATTGGTTCCTAAAGAGGTTTACAAATCTTCAGACATACGGTATA
                      ____________________________________________________________
consensus             GGTTTGGTTCAACACCATTGGTTCCTAAAGAGGTTTACAAATCTTCAGACATACGGTATA
 
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JMFF011B22-           TGTACAAGAACCAGTTGCAGCAATATGCTCAGAAGCAGAATATTACTTTACCTGAATATT
                      ____________________________________________________________
consensus             TGTACAAGAACCAGTTGCAGCAATATGCTCAGAAGCAGAATATTACTTTACCTGAATATT
 
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JMFF011B22-           CTTGTGAAATTGAAGGGCCACCACATGCTTGTCGCTTTAGATCAAAAGTGGTTTTTGGTG
                      ____________________________________________________________
consensus             CTTGTGAAATTGAAGGGCCACCACATGCTTGTCGCTTTAGATCAAAAGTGGTTTTTGGTG
 
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JMFF011B22-           GAAAAATCTTTGAAACCCAAGAATTTTTCTCTACATTGAAGGAAGCTGAACAAGCAGCTG
                      ____________________________________________________________
consensus             GAAAAATCTTTGAAACCCAAGAATTTTTCTCTACATTGAAGGAAGCTGAACAAGCAGCTG
 
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JMFF011B22-           CAAAAATTGCTCTTGAGGCATTATCACCCCAAGAAATTCAAAAGGGTGTAGGTTTATACA
                      ____________________________________________________________
consensus             CAAAAATTGCTCTTGAGGCATTATCACCCCAAGAAATTCAAAAGGGTGTAGGTTTATACA
 
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JMFF011B22-           AGGCCCTTCTACAACAACTGGAACAAAAACAGGGTGGCCTGTTTCCAGTATACAAGACAA
                      ____________________________________________________________
consensus             AGGCCCTTCTACAACAACTGGAACAAAAACAGGGTGGCCTGTTTCCAGTATACAAGACAA
 
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JMFF011B22-           TCCAGTCTGGTCCACCTCATGATCCAACTTTTGTGGCCACTGTGGTAGTTGGTGGTGAGA
rJMSF027I12+                            ATGATCCAACTTTTGTGGCCACTGTGGTAGTTGGTGGTGAGA
rJMSF009B05+                            ATGATCCAACTTTTGTGGCCACTGTGGTAGTTGGTGGTGAGA
rJMSF050D13+                                                  TGTGGTAGTTGGTGGTGAGA
rJMSF016N16+                                                ACTGTGGTAGTTGGTGGTGAGA
rJMSF051D13+                                                  TGTGGTAGTTGGTGGTGAGA
                      ____________________________________________________________
consensus             TCCAGTCTGGTCCACCTCATGATCCAACTTTTGTGGCCACTGTGGTAGTTGGTGGTGAGA
 
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JMFF011B22-           CATACCAAGGACTANAAGCTAAAAGCAAGAAGCAGGCTGAGATGAGTGCTGCAGAAGTTG
rJMSF027I12+          CATACCAAGGACTAGAAGCTAAAAGCAAGAAGCAGGCTGAGATGAGTGCTGCAGAAGTTG
rJMSF009B05+          CATACCAAGGACTAGAAGCTAAAAGCAAGAAGCAGGCTGAGATGAGTGCTGCAGAAGTTG
rJMSF050D13+          CATACCAAGGACTAGAAGCTAAAAGCAAGAAGCAGGCTGAGATGAGTGCTGCAGAAGTTG
rJMSF016N16+          CATACCAAGGACTAGAAGCTAAAAGCAAGAAGCAGGCTGAGATGAGTGCTGCAGAAGTTG
rJMSF051D13+          CATACCCAGGACTAGAAGCTAAAAGCAAGAAGCAGGCTGAGATGAGTGCTGCAGAAGTTG
rJMFF011B22+                            CTAAAAGCAAGAAGCAGGCTGAGATGAGTGCTGCAGAAGTTG
                      ____________________________________________________________
consensus             CATACCAAGGACTAGAAGCTAAAAGCAAGAAGCAGGCTGAGATGAGTGCTGCAGAAGTTG
 
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JMFF011B22-           CGTATAATTCTTGTATGAAGGGTACAGAAAATGCTTCA                      
rJMSF027I12+          CGTATAATTCTTGTATGAAGGGTACAGAAAATGCTTCAAAGAGGCAGAAAACATCAGCTG
rJMSF009B05+          CGTATAATTCTTGTATGAAGGGTACAGAAAATGCTTCAAAGAGGCAGAAAACATCAGCTG
rJMSF050D13+          CGTATAATTCTTGTATGAAGGGTACAGAAAATGCTTCAAAGAGGCAGAAAACATCAGCTG
rJMSF016N16+          CGTATAATTCTTGTATGAAGGGTACAGAAAATGCTTCAAAGAGGCAGAAAACATCAGCTG
rJMSF051D13+          CGTATAATTCTTGTATGAAGGGTACAGAAAATGCTTCAAAGAGGCAGAAAACATCAGCTG
rJMFF011B22+          CGTATAATTCTTGTATGAAGGGTACAGAAAATGCTTCAAAGAGGCAGAAAACATCAGCTG
                      ____________________________________________________________
consensus             CGTATAATTCTTGTATGAAGGGTACAGAAAATGCTTCAAAGAGGCAGAAAACATCAGCTG
 
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rJMSF027I12+          CACCTGGCACGCATGTACATGCCCAGTCCTCAGCCTCACCACTACCACTCCAGCATACAA
rJMSF009B05+          CACCTGGCACGCATGTACATGCCCAGTCCTCAGCCTCACCACTACCACTCCAGCATACAA
rJMSF050D13+          CACCTGGCACGCATGTACATGCCCAGTCCTCAGCCTCACCACTACCACTCCAGCATACAA
rJMSF016N16+          CACCTGGCACGCATGTACATGCCCAGTCCTCAGCCTCACCACTACCACTCCAGCATACAA
rJMSF051D13+          CACCTGGCACGCATGTACATGCCCAGTCCTCAGCCTCACCACTACCACTCCAGCATACAA
JMFN040G14-                                            CCTCACCACTACCACTCCAGCATACAA
JMFN013J15+                                                      ACCACTCCAGCATACAA
rJMFF011B22+          CACCTGGCACGCATGTACATGCCCAGTCCTCAGCCTCACCACTACCACTCCAGCATACAA
                      ____________________________________________________________
consensus             CACCTGGCACGCATGTACATGCCCAGTCCTCAGCCTCACCACTACCACTCCAGCATACAA
 
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rJMSF027I12+          CTCATCCTGCTGTGGAGTCTGTTATTCAGAGTT-CATCTGAATTCTATGCCAAGGAAATG
rJMSF009B05+          CTCATCCTGCTGTGGAGTCTGTTATTCAGAGTT-CATCTGAATTCTATGCCAAGGAAATG
rJMSF050D13+          CTCATCCTGCTGTGGAGTCTGTTATTCAGAGTT-CATCTGAATTCTATGCCAAGGAAATG
rJMSF016N16+          CTCATCCTGCTGTGGAGTCTGTTATTCAGAGTT-CATCTGAATTCTATGCCAAGGAAATG
rJMSF051D13+          CTCATCCTGCTGTGGAGTCTGTTATTCAGAGTT-CATCTGAATTCTATGCCAAGGAAATG
JMFN040G14-           CTCATCCTGCTGTGGAGTCTGTTATTCAGAGTT-CATCTGAATTCTATGCCAAGGAAATG
JMFN013J15+           CTGATCCTGCTGTGGAGTCTGTTATTCAGAGTTCCATCTGAATTCTATGCCAAGGAAATA
rJMFF011B22+          CTCATCCTGCTGTGGAGTCTGTTATTCAGAGTT-CATCTGAATTCTATGCCAAGGAAATG
                      ____________________________________________________________
consensus             CTCATCCTGCTGTGGAGTCTGTTATTCAGAGTT-CATCTGAATTCTATGCCAAGGAAATG
 
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rJMSF027I12+          GATATGATTGAGGTTTCACAACCCAATTCAAATGAGGCAGTTTCTGGTCATGCTTCCACC
rJMSF009B05+          GATATGATTGAGGTTTCACAACCCAATTCAAATGAGGCAGTTTCTGGTCATGCTTCCACC
rJMSF050D13+          GATATGATTGAGGTTTCACAACCCAATTCAAATGAGGCAGTTTCTGGTCATGCTTCCACC
rJMSF016N16+          GATATGATTGAGGTTTCACAACCCAATTCAAATGAGGCAGTTTCTGGTCATGCTTCCACC
rJMSF051D13+          GATATGATTGAGGTTTCACAACCCAATTCAAATGAGGCAGTTTCTGGTCATGCTTCCACC
JMFN040G14-           GATATGATTGAGGTTTCACAACCCAATTCAAATGAGGCAGTTTCTGGTCATGCTTCCACC
JMFN013J15+           GATAAGATTGAGGTTTCACAACCCAATCCAAATGAGGCAGTTTCTGGTCATGCTTCCACC
rJMFF011B22+          GATATGATTGAGGTTTCACAACCCAATTCAAATGAGGCAGTTTCTGGTCATGCTTCCACC
                      ____________________________________________________________
consensus             GATATGATTGAGGTTTCACAACCCAATTCAAATGAGGCAGTTTCTGGTCATGCTTCCACC
 
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rJMSF027I12+          TTGC----CCTCTATCCAGGCTTTGCCTGACAACCAATCCTCCACTCCACTGAAGCAAGA
rJMSF009B05+          TTGC----CCTCTATCCAGGCTTTGCCTGACAACCAATCCTCCACTCCACTGAAGCAAGA
rJMSF050D13+          TTGC----CCTCTATCCAGGCTTTGCCTGACAACCAATCCTCCACTCCACTGAAGCAAGA
rJMSF016N16+          TTGC----CCTCTATCCAGGCTTTGCCTGACAACCAATCCTCCACTCCACTGAAGCAAGA
rJMSF051D13+          TTGC----CCTCTATCCAGGCTTTGCCTGACAACCAATCCTCCACTCCACTGAAGCAAGA
JMFN040G14-           TTGC----CCTCTATCCAGGCTTTGCCTGACAACCAATCCTCCACTCCACTGAAGCAAGA
JMFN013J15+           TTGCCCGGCCTCTATCCAGGCTTTGCCTGACAACCAATCCTCCACTCCACTGACGCTAGA
rJMSF009B06+                                                            TGAAGCAAGA
rJMFF011B22+          TTGC----CCTCTATCCAGGCTTTGCCTGACAACCAATCCTCCACTCCACTGAAGCAAGA
                      ____________________________________________________________
consensus             TTGC----CCTCTATCCAGGCTTTGCCTGACAACCAATCCTCCACTCCACTGAAGCAAGA
 
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rJMSF027I12+          GCATTTAACTTGTTCTATTCAAGAGTTTGATCAGAAGAGACCAGCTGTGAGGGACATGAT
rJMSF009B05+          GCATTTAACTTGTTCTATTCAAGAGTTTGATCAGAAGAGACCAGCTGTGAGGGACATGAT
rJMSF050D13+          GCATTTAACTTGTTCTATTCAAGAGTTTGATCAGAAGAGACCAGCTGTGAGGGACATGAT
rJMSF016N16+          GCATTTAACTTGTTCTATTCAAGAGTTTGATCAGAAGAGACCAGCTGTGAGGGACATGAT
rJMSF051D13+          GCATTTAACTTGTTCTATTCAAGAGTTTGATCAGAAGAGACCAGCTGTGAGGGACATGAT
JMFN040G14-           GCATTTAACTTGTTCTATTCAAGAGTTTGATCAGAAGAGACCAGCTGTGAGGGACATGAT
JMFN013J15+           GCATTTAACTTGTTCTATTCAGGAGTTTGATCAGAAGAGACCAGCTGTGAGGGACATGAT
rJMSF009B06+          GCATTTAACTTGTTCTATTCAAGAGTTTGATCAGAAGAGNCCAGCTGTGAGGGACANGAT
rJMFF011B22+          GCATTTAACTTGTTCTATTCAAGAGTTTGATCAGAAGAGACCAGCTGTGAGGGACATGAT
                      ____________________________________________________________
consensus             GCATTTAACTTGTTCTATTCAAGAGTTTGATCAGAAGAGACCAGCTGTGAGGGACATGAT
 
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rJMSF027I12+          TTTGGTTTACCCAAATGCTTCAAATCAGATACTTCCTGTCCCTGAGAATGCTTCCATCTT
rJMSF009B05+          TTTGGTTTACCCAAATGCTTCAAATCAGATACTTCCTGTCCCTGAGAATGCTTCCATCTT
rJMSF050D13+          TTTGGTTTACCCAAATGCTTCAAATCAGATACTTCCTGTCCCTGAGAATGCTTCCATCTT
rJMSF016N16+          TTTGGTTTACCCAAATGCTTCAAATCAGATACTTCCTGTCCCTGAGAATGCTTCCATCTT
rJMSF051D13+          TTTGGTTTACCCAAATGCTTCAAATCAGATACTTCCTGTCCCTGAGAATGCTTCCATCTT
JMFN040G14-           TTTGGTTTACCCAAATGCTTCAAATCAGATACTTCCTGTCCCTGAGAATGCTTCCATCTT
JMFN013J15+           TTTGGTTTATCCAAATGCTTCAAGTCAGGTACTTCCTGTCCCTGAGATTGCTTCCATCTT
rJMSF009B06+          TTTGGTTTACCCAAATGCTTCAAATCAGATA                             
rJMFF011B22+          TTTGGTTTACCCAAATGCTTCAAATCAGATACTTCCTGTCCCTGAGAATGCTTCCATCTT
                      ____________________________________________________________
consensus             TTTGGTTTACCCAAATGCTTCAAATCAGATACTTCCTGTCCCTGAGAATGCTTCCATCTT
 
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rJMSF027I12+          GGCCTGCAGCAACAACAAATGGACGGCTGTTCAAGTAGAGCTGAATCAGAATGAAGGGCA
rJMSF009B05+          GGCCTGCAGCAACAACAAATGGACGGCTGTTCAAGTAGAGCTGAATCAGAATGAAGGGCA
rJMSF050D13+          GGCCTGCAGCAACAACAAATGGACGGCTGTTCAAGTAGAGCTGAATCAGAATGAAGGGCA
rJMSF016N16+          GGCCTGCAGCAACAACAAATGGACGGCTGTTCAAGTAGAGCTGAATCAGAATGAAGGGCA
rJMSF051D13+          GGCCTGCAGCAACAACAAATGGACGGCTGTTCAAGTAGAGCTGAATCAGAATGAAGGGCA
JMFN040G14-           GGCCTGCAGCAACAACAAATGGACGGCTGTTCAAGTAGAGCTGAATCAGAATGAAGGGCA
JMFN013J15+           GCCCTGCAGCAACAACAAATGGACGGCTGTTGGAGTAGAGCT                  
rJMFF011B22+          GGCCTGCAGCAACAACAAATGGACGGCTGTTCAAGTAGAGCTGAATCAGAATGAAGGGCA
                      ____________________________________________________________
consensus             GGCCTGCAGCAACAACAAATGGACGGCTGTTCAAGTAGAGCTGAATCAGAATGAAGGGCA
 
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rJMSF027I12+          GAACTATTGTCCATCCACATCCTGTGTGTAATCTTGCATTCATTTTGTATGTTGTCAGGG
rJMSF009B05+          GAACTATTGTCCATCCACATCCTGTGTGTAATCTTGCATTCATTTTGTATGTTGTCAGGG
rJMSF050D13+          GAACTATTGTCCATCCACATCCTGTGTGTAATCTTGCATTCATTTTGTATGTTGTCAGGG
rJMSF016N16+          GAACTATTGTCCATCCACATCCTGTGTGTAATCTTGCATTCATTTTGTATGTTGTCAGGG
rJMSF051D13+          GAACTATTGTCCATCCACATCCTGTGTGTAATCTTGCATTCATTTTGTATGTTGTCAGGG
JMFN040G14-           GAACTATTGTCCATCCACATCCTGTGTGTAATCTTGCATTCATTTTGTATGTTGTCAGGG
rJMFF011B22+          GAACTATTGTCCATCCACATCCTGTGTGTAATCTTGCATTCATTTTGTATGTTGTCAGGG
                      ____________________________________________________________
consensus             GAACTATTGTCCATCCACATCCTGTGTGTAATCTTGCATTCATTTTGTATGTTGTCAGGG
 
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rJMSF027I12+          AATTTGTTACTGCCTTGGTTGGGGTTGGCAGTTCGTAGTTGTTGGAGTTTGTTTCGCATT
rJMSF009B05+          AATTTGTTACTGCCTTGGTTGGGGTTGGCAGTTCGTAGTTGTTGGAGTTTGTTTCGCATT
rJMSF050D13+          AATTTGTTACTGCCTTGGTTGGGGTTGGCAGTTCGTAGTTGTTGGAGTTTGTTTCGCATT
rJMSF016N16+          AATTTGTTACTGCCTTGGTTGGGGTTGGCAGTTCGTAGTTGTTGGAGTTTGTTTCGCATT
rJMSF051D13+          AATTTGTTACTGCCTTGGTTGGGGTTGGCAGTTCGTAGTTGTTGGAGTTTGTTTCGCATT
JMFN040G14-           AATTTGTTACTGCCTTGGTTGGGGTTGGCAGTTCGTAGTTGTTGGAGTTTGTTTCGCATT
rJMFF011B22+          AATTTGTTACTGCCTTGGTTGGGGTTGGCAGTTCGTAGTTGTTGGAGTTTGTTTCGCATT
                      ____________________________________________________________
consensus             AATTTGTTACTGCCTTGGTTGGGGTTGGCAGTTCGTAGTTGTTGGAGTTTGTTTCGCATT
 
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rJMSF027I12+          CTTACTCTCTTTTGCTGGGAAAGTTGGAACTTTGGCCTTATTTGACAATCAGCAATTAGC
rJMSF009B05+          CTTACTCTCTTTTGCTGGGAAAGTTGGAACTTTGGCCTTATTTGACAATCAGCAATTAGC
rJMSF050D13+          CTTACTCTCTTTTGCTGGGAAAGTTGGAACTTTGGCCTTATTTGACAATCAGCAATTAGC
rJMSF016N16+          CTTACTCTCTTTTGCTGGGAAAGTTGGAACTTTGGCCTTATTTGACAATCAGCAATTAGC
rJMSF051D13+          CTTACTCTCTTTTGCTGGGAAAGTTGGAACTTTGGCCTTATTTGACAATCAGCAATTAGC
JMFN040G14-           CTTACTCTCTTTTGCTGGGAAAGTTGGAACTTTGGCCTTATTTGACAATCAGCAATTAGC
rJMFF011B22+          CTTACTCTCTTTTGCTGGGAAAGTTGGAACTTTGGCCTTATTTGACAATCAGCAATTAGC
                      ____________________________________________________________
consensus             CTTACTCTCTTTTGCTGGGAAAGTTGGAACTTTGGCCTTATTTGACAATCAGCAATTAGC
 
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rJMSF027I12+          AAATAGGGAATTGTATAAGTAGG                                     
rJMSF009B05+          AAATAGGGAATTGTATAAGTAGGT                                    
rJMSF050D13+          AAATAGGGAATTGTATAAGTAGGT                                    
rJMSF016N16+          AAATAGGGAATTGTATAAGTAGGT                                    
rJMSF051D13+          AAATAGGGAATTGTATAAGTAGGT                                    
JMFN040G14-           AAATAGGGAATTGTATAAGTAGGTGTGACAGAGGATTGTATC                  
rJMFF011B22+          AAATAGGGAATTGTATAAGTAGGTGTGACAGAGGATTGTATCCAGTGATTANAAAAAAAG
                      ____________________________________________________________
consensus             AAATAGGGAATTGTATAAGTAGGTGTGACAGAGGATTGTATCCAGTGATTANAAAAAAAG