| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010D14 | Sequence | 549 | 000801 (4) | ref|XP_009768322.1| | 7e-67 | PREDICTED: CTP synthase-like isoform X2 [Nicotiana sylvestris] | 686 | 001053 (3) | ref|XP_009768378.1| | 6e-28 | PREDICTED: CTP synthase 1-like isoform X3 [Nicotiana sylvestris] |
| JMFF032I19 | Sequence | 478 | 000801 (4) | gb|AFW81197.1| | 2e-51 | hypothetical protein ZEAMMB73_715811 [Zea mays] | 654 | 001053 (3) | ref|XP_009590347.1| | 1e-21 | PREDICTED: CTP synthase 1-like isoform X2 [Nicotiana tomentosiformis] |
| JMSF029A20 | Sequence | 667 | 000801 (4) | gb|AFW83443.1| | 8e-40 | hypothetical protein ZEAMMB73_211552, partial [Zea mays] | 689 | 001053 (3) | ref|XP_010319553.1| | 3e-33 | PREDICTED: CTP synthase 1-like isoform X2 [Solanum lycopersicum] ref|XP_01031955 |
This contig is upended
. : . : . : . : . : . :
rJMSF029A20+ GTCTATGTTTACAGGCAAAGATGACACTGGTCACCGCATGGAGATTGTTGAACTGCTTGA
rJMFF010D14+ CGCATGGAGATTGTTGAACTGCTTGA
____________________________________________________________
consensus GTCTATGTTTACAGGCAAAGATGACACTGGTCACCGCATGGAGATTGTTGAACTGCTTGA
. : . : . : . : . : . :
rJMSF029A20+ ACATCCTTACTTTGTTGGTGTTCAATTTCATCCCGAGTTCAAATCAAGACCTGGAAAACC
rJMFF032I19+ TTACTTTGTTGGTGTTCAATTTCATCCCGAGTTCAAATCAAGACCTGGAAAACC
rJMFF010D14+ ACATCCTTACTTTGTTGGTGTTCAATTTCATCCCGAGTTCAAATCAAGACCTGGAAAACC
____________________________________________________________
consensus ACATCCTTACTTTGTTGGTGTTCAATTTCATCCCGAGTTCAAATCAAGACCTGGAAAACC
. : . : . : . : . : . :
rJMSF029A20+ TTCCGCTCTCTTCTTAGGACTCATAGCTGCAGCAAGCGGACAACTGGAAGCCCATCTAAA
rJMFF032I19+ TTCCGCTCTCTTCTTAGGACTCATAGCTGCAGCAAGCGGACAACTGGAAGCCCATCTAAA
rJMFF010D14+ TTCCGCTCTCTTCTTAGGACTCATAGCTGCAGCAAGCGGACAACTGGAAGCCCATCTAAA
____________________________________________________________
consensus TTCCGCTCTCTTCTTAGGACTCATAGCTGCAGCAAGCGGACAACTGGAAGCCCATCTAAA
. : . : . : . : . : . :
rJMSF029A20+ GAAGGGTGTGCCAAATGGAGTTGTAAACAATTCGGCAAAAAAGCCATTCCGGCCTCATGT
rJMFF032I19+ GAAGGGTGTGCCAAATGGAGTTGTAAACAATTCGGCAAAAAAGCCATTCCGGCCTCATGT
rJMFF010D14+ GAAGGGTGTGCCAAATGGAGTTGTAAACAATTCGGCAAAAAAGCCATTCCGGCCTCATGT
____________________________________________________________
consensus GAAGGGTGTGCCAAATGGAGTTGTAAACAATTCGGCAAAAAAGCCATTCCGGCCTCATGT
. : . : . : . : . : . :
rJMSF029A20+ AAATGGAACCAAGCTCACAAATGGATCCTTTGAACCTGGCATATACCGGAATGGTAAAGG
rJMFF032I19+ AAATGGAACCAAGCTCACAAATGGATCCTTTGAACCTGGCATATACCGGAATGGTAAAGG
rJMFF010D14+ AAATGGAACCAAGCTCACAAATGGATCCTTTGAACCTGGCATATACCGGAATGGTAAAGG
____________________________________________________________
consensus AAATGGAACCAAGCTCACAAATGGATCCTTTGAACCTGGCATATACCGGAATGGTAAAGG
. : . : . : . : . : . :
rJMSF029A20+ AATACGTGCCTGACCTTTTTCTGGCTGAATGCCTCTGGTCTTGAGATTGAGTTTCTTCCA
rJMFF032I19+ AATACGTGCCTGACCTTTTTCTGGCTGAATGCCTCTGGTCTTGAGATTGAGTTTCTTCCA
rJMFF010D14+ AATACGTGCCTGACCTTTTTCTGGCTGAATGCCTCTGGTCTTGAGATTGAGTTTCTTCCA
____________________________________________________________
consensus AATACGTGCCTGACCTTTTTCTGGCTGAATGCCTCTGGTCTTGAGATTGAGTTTCTTCCA
. : . : . : . : . : . :
rJMSF029A20+ TTTGTCAGTTTTGCGGCCATCTTTTTCGTACCACCTATTTTATGTATAGGCATATTATGA
rJMFF032I19+ TTTGTCAGTTTTGCGGCCATCTTTTTCGTACCACCTATTTTATGTATAGGCATATTATGA
rJMFF010D14+ TTTGTCAGTTTTGCGGCCATCTTTTTCGTACCACCTATTTTATGTATAGGCATATTATGA
____________________________________________________________
consensus TTTGTCAGTTTTGCGGCCATCTTTTTCGTACCACCTATTTTATGTATAGGCATATTATGA
. : . : . : . : . : . :
rJMSF029A20+ CTAGAGTGATATAGGTTTACAGCGTATCATTTAACCCAATCAAAAGGTAGAGCAGAATTC
rJMFF032I19+ CTAGAGTGATATAGGTTTACAGCGTATCATTTAACCCAATCAAAAGGTAGAGCAGAATTC
rJMFF010D14+ CTAGAGTGATATAGGTTTACAGCGTATCATTTAACCCAATCAAAAGGTAGAGCAGAATTC
____________________________________________________________
consensus CTAGAGTGATATAGGTTTACAGCGTATCATTTAACCCAATCAAAAGGTAGAGCAGAATTC
. : . : . : . : . : . :
rJMSF029A20+ CGGTCATTTTTTCACGGAACAAACCTGTTGTAGCTCTTCCATATGTATGAAGCAGAAAAG
rJMFF032I19+ CGGTCATTTTTTCACGGAACAAACCTGTTGTAGCTCTTCCATATGTATGAAGCAGAAAAG
rJMFF010D14+ CGGTCATTTTTTCACGGAACAAACCTGTTGTAGCTCTTCCATATGTATGAAGCAGAAAAG
____________________________________________________________
consensus CGGTCATTTTTTCACGGAACAAACCTGTTGTAGCTCTTCCATATGTATGAAGCAGAAAAG
. : . : . : . : . : . :
rJMSF029A20+ AAGGGAGTTATATATCCAGCAGAAAAGGGGGGTTGGTTCTTCTGATCTCACTCTTTCTAG
rJMFF032I19+ AAGGGAGTTATATATCCAGCAGAAAAGGGGGGTTGGTTCTTCTGATCTCACTCTTTCTAG
rJMFF010D14+ AAGGGAGTTATATATCCAGCAGAAAAGGGGGGTTGGTTCTTCTGATCTCACTCTTTCTAG
____________________________________________________________
consensus AAGGGAGTTATATATCCAGCAGAAAAGGGGGGTTGGTTCTTCTGATCTCACTCTTTCTAG
. : . : . : . : . : . :
rJMSF029A20+ TATACATTAGGTGCTTGAAGGATGGAGATGTTTGCATATGTTGATTTATATAGCTTGATC
rJMFF032I19+ TATACATTAGGTGCTTGAAGGATGGAGATGTTTGCATATGTTGATTTATATAGCTTGATC
rJMFF010D14+ TATACATTAGGTGCTTGAAGGATGGAGATGTTTGCATATGTTGATTTATATAGCTTGATC
____________________________________________________________
consensus TATACATTAGGTGCTTGAAGGATGGAGATGTTTGCATATGTTGATTTATATAGCTTGATC
. : . : . : . : . : . :
rJMSF029A20+ TGGATATGATGTAAAAA
rJMFF032I19+ TGGATATGATGTAAAAACTGTGAACTCATTCCCAGTGGGGATTAGTTAAATGATGTAATC
rJMFF010D14+ TGGATATGATGTAAAAACTGTGAACTCATTCCCAGTGGGGATTAGTTAAATGATGTAATC
____________________________________________________________
consensus TGGATATGATGTAAAAACTGTGAACTCATTCCCAGTGGGGATTAGTTAAATGATGTAATC