clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF006A11 | Sequence | 595 | 004462 (6) | gb|AAF86340.1|AF277455_1 | 9e-73 | UMP synthase [Nicotiana plumbaginifolia] | 785 | 001050 (6) | gb|AAF86340.1|AF277455_1 | 3e-129 | UMP synthase [Nicotiana plumbaginifolia] |
JMFF009D11 | Sequence | 552 | 004462 (6) | ref|XP_006362855.1| | 4e-84 | PREDICTED: uridine 5'-monophosphate synthase-like [Solanum tuberosum] | 743 | 001050 (6) | gb|AAF86340.1|AF277455_1 | 3e-119 | UMP synthase [Nicotiana plumbaginifolia] |
JMFF015H15 | Sequence | 548 | 004462 (6) | ref|XP_006362855.1| | 3e-82 | PREDICTED: uridine 5'-monophosphate synthase-like [Solanum tuberosum] | 641 | 001050 (6) | ref|XP_011091831.1| | 1e-93 | PREDICTED: uridine 5'-monophosphate synthase [Sesamum indicum] |
JMSF021A14 | Sequence | 676 | 004462 (6) | ref|XP_006362855.1| | 2e-100 | PREDICTED: uridine 5'-monophosphate synthase-like [Solanum tuberosum] | 806 | 001050 (6) | ref|XP_009606895.1| | 6e-138 | PREDICTED: uridine 5'-monophosphate synthase [Nicotiana tomentosiformis] |
JMSF033A14 | Sequence | 635 | 004462 (6) | ref|XP_006362855.1| | 8e-103 | PREDICTED: uridine 5'-monophosphate synthase-like [Solanum tuberosum] | 728 | 001050 (6) | ref|XP_011091831.1| | 4e-90 | PREDICTED: uridine 5'-monophosphate synthase [Sesamum indicum] |
JMSF038A21 | Sequence | 685 | 004462 (6) | gb|AAF86340.1|AF277455_1 | 1e-96 | UMP synthase [Nicotiana plumbaginifolia] | 875 | 001050 (6) | ref|XP_009606895.1| | 9e-153 | PREDICTED: uridine 5'-monophosphate synthase [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF038A21+ GGCCAG
____________________________________________________________
consensus GGCCAG
. : . : . : . : . : . :
rJMSF038A21+ GGTGCCATTTNGGGGAGAGGGCTAAGATAGCAAAAAACCCTACAGGGAAGAGGCTATTTG
____________________________________________________________
consensus GGTGCCATTTNGGGGAGAGGGCTAAGATAGCAAAAAACCCTACAGGGAAGAGGCTATTTG
. : . : . : . : . : . :
rJMSF038A21+ AGATAATGGTGCAGAAGGAAACTAACTTGTGTTTGTCTGCTGATGTCTCTACTGCAGCTG
rJMSF021A14+ AGAAGGAAACTAACTTGTGTTTGTCTGCTGATGTCTCTACTGCAGCTG
rJMFF006A11+ ACTGCAGCTG
____________________________________________________________
consensus AGATAATGGTGCAGAAGGAAACTAACTTGTGTTTGTCTGCTGATGTCTCTACTGCAGCTG
. : . : . : . : . : . :
rJMSF038A21+ CATTGCTTGATATTGCTGAAAAGGTTGGGCCAGAAATTTGCATGTTGAAAACCCATGTTG
rJMSF021A14+ CATTGCTTGATATTGCTGAAAAGGTTGGGCCAGAAATTTGCATGTTGAAAACCCATGTTG
rJMSF033A14+ GGCCAGAAATTTGCATGTTG-AAACCCATGTTG
rJMFF006A11+ CATTGCTTGATATTGCTGAAAAGGTTGGGCCAGAAATTTGCATGTTGAAAACCCATGTTG
rJMFF009D11+ TTTGCATGTTGAAAACCCATGTTG
____________________________________________________________
consensus CATTGCTTGATATTGCTGAAAAGGTTGGGCCAGAAATTTGCATGTTGAAAACCCATGTTG
. : . : . : . : . : . :
rJMSF038A21+ ACATATTGCCAGATTTCACCCCAGATTTTGGCTCTAAACTTCGATCTATTGCAGAGAAGC
rJMSF021A14+ ACATATTGCCAGATTTCACCCCAGATTTTGGCTCTAAACTTCGATCTATTGCAGAGAAGC
rJMSF033A14+ ACATATTGCCAGATTTCACCCCAGATTTTGGCTCTAAACTTCGATCTATTGCAGAGAAGC
rJMFF006A11+ ACATATTGCCAGATTTCACCCCAGATTTTGGCTCTAAACTTCGATCTATTGCAGAGAAGC
rJMFF009D11+ ACATATTGCCAGATTTCACCCCAGATTTTGGCTCTAAACTTCGATCTATTGCAGAGAAGC
____________________________________________________________
consensus ACATATTGCCAGATTTCACCCCAGATTTTGGCTCTAAACTTCGATCTATTGCAGAGAAGC
. : . : . : . : . : . :
rJMSF038A21+ ATAATTTCTTAATCTTTGAAGATCGCAAGTTTGCTGACATTGGCAACACAGTCACAATGC
rJMSF021A14+ ATAATTTCTTAATCTTTGAAGATCGCAAGTTTGCTGACATTGGCAACACAGTCACAATGC
rJMSF033A14+ ATAATTTCTTAATCTTTGAAGATCGCAAGTTTGCTGACATTGGCAACACAGTCACAATGC
rJMFF006A11+ ATAATTTCTTAATCTTTGAAGATCGCAAGTTTGCTGACATTGGCAACACAGTCACAATGC
rJMFF015H15+ CTTTGAAGATCGCAAGTTTGCTGACATTGGCAACACAGTCACAATGC
rJMFF009D11+ ATAATTTCTTAATCTTTGAAGATCGCAAGTTTGCTGACATTGGCAACACAGTCACAATGC
____________________________________________________________
consensus ATAATTTCTTAATCTTTGAAGATCGCAAGTTTGCTGACATTGGCAACACAGTCACAATGC
. : . : . : . : . : . :
rJMSF038A21+ AATATGAAGGTGGTATCTTCCGTATATTGGATTGGGCAGACATAGTAAACGCCCATATTA
rJMSF021A14+ AATATGAAGGTGGTATCTTCCGTATATTGGATTGGGCAGACATAGTAAACGCCCATATTA
rJMSF033A14+ AATATGAAGGTGGTATCTTCCGTATATTGGATTGGGCAGACATAGTAAACGCCCATATTA
rJMFF006A11+ AATATGAAGGTGGTATCTTCCGTATATTGGATTGGGCAGACATAGTAAACGCCCATATTA
rJMFF015H15+ AATATGAAGGTGGTATCTTCCGTATATTGGATTGGGCAGACATAGTAAACGCCCATATTA
rJMFF009D11+ AATATGAAGGTGGTATCTTCCGTATATTGGATTGGGCAGACATAGTAAACGCCCATATTA
____________________________________________________________
consensus AATATGAAGGTGGTATCTTCCGTATATTGGATTGGGCAGACATAGTAAACGCCCATATTA
. : . : . : . : . : . :
rJMSF038A21+ TCCCGGGTCCAGGAATAGTGGATGGGCTGAAACTGAAGGGTTTGCCCCGTGGGAGAGGCC
rJMSF021A14+ TCCCGGGTCCAGGAATAGTGGATGGGCTGAAACTGAAGGGTTTGCCCCGTGGGAGAGGCC
rJMSF033A14+ TCCCGGGTCCAGGAATAGTGGATGGGCTGAAACTGAAGGGTTTGCCCCGTGGGAGAGGCC
rJMFF006A11+ TCCCGGGTCCAGGAATAGTGGATGGGCTGAAACTGAAGGGTTTGCCCCGTGGGAGAGGCC
rJMFF015H15+ TCCCGGGTCCAGGAATAGTGGATGGGCTGAAACTGAAGGGTTTGCCCCGTGGGAGAGGCC
rJMFF009D11+ TCCCGGGTCCAGGAATAGTGGATGGGCTGAAACTGAAGGGTTTGCCCCGTGGGAGAGGCC
____________________________________________________________
consensus TCCCGGGTCCAGGAATAGTGGATGGGCTGAAACTGAAGGGTTTGCCCCGTGGGAGAGGCC
. : . : . : . : . : . :
rJMSF038A21+ TACTGCTGCTCGCTGAAATGAGTTCCGCCGGTAACCTTGCAAAGGGAGACTATACAGCTG
rJMSF021A14+ TACTGCTGCTCGCTGAAATGAGTTCCGCCGGTAACCTTGCAAAGGGAGACTATACAGCTG
rJMSF033A14+ TACTGCTGCTCGCTGAAATGAGTTCCGCCGGTAACCTTGCAAAGGGAGACTATACAGCTG
rJMFF006A11+ TACTGCTGCTCGCTGAAATGAGTTCCGCCGGTAACCTTGCAAAGGGAGACTATACAGCTG
rJMFF015H15+ TACTGCTGCTCGCTGAAATGAGTTCCGCCGGTAACCTTGCAAAGGGAGACTATACAGCTG
rJMFF009D11+ TACTGCTGCTCGCTGAAATGAGTTCCGCCGGTAACCTTGCAAAGGGAGACTATACAGCTG
____________________________________________________________
consensus TACTGCTGCTCGCTGAAATGAGTTCCGCCGGTAACCTTGCAAAGGGAGACTATACAGCTG
. : . : . : . : . : . :
rJMSF038A21+ CAACTGCAAAAATTGCTGAGGATCATTCAGATTTTGTGATTGGCTTCATCTCTGTCAATC
rJMSF021A14+ CAACTGCAAAAATTGCTGAGGATCATTCAGATTTTGTGATTGGCTTCATCTCTGTCAATC
rJMSF033A14+ CAACTGCAAAAATTGCTGAGGATCATTCAGATTTTGTGATTGGCTTCATCTCTGTCAATC
rJMFF006A11+ CAACTGCAAAAATTGCTGAGGATCATTCAGATTTTGTGATTGGCTTCATCTCTGTCAATC
rJMFF015H15+ CAACTGCAAAAATTGCTGAGGATCATTCAGATTTTGTGATTGGCTTCATCTCTGTCAATC
rJMFF009D11+ CAACTGCAAAAATTGCTGAGGATCATTCAGATTTTGTGATTGGCTTCATCTCTGTCAATC
____________________________________________________________
consensus CAACTGCAAAAATTGCTGAGGATCATTCAGATTTTGTGATTGGCTTCATCTCTGTCAATC
. : . : . : . : . : . :
rJMSF038A21+ CTGCATCATGGCCAAATTCTGGAAATCCAGGTTTGATTCACGCAACTCCTGGCGTGCAGC
rJMSF021A14+ CTGCATCATGGCCAAATTCTGGAAATCCAGGTTTGATTCACGCAACTCCTGGCGTGCAGC
rJMSF033A14+ CTGCATCATGGCCAAATTCTGGAAATCCAGGTTTGATTCACGCAACTCCTGGCGTGCAGC
rJMFF006A11+ CTGCATCATGGCCAAATTCTGGAAATCCAGGTTTGATTCACGCAACTCCTGGCGTGCAGC
rJMFF015H15+ CTGCATCATGGCCAAATTCTGGAAATCCAGGTTTGATTCACGCAACTCCTGGCGTGCAGC
rJMFF009D11+ CTGCATCATGGCCAAATTCTGGAAATCCAGGTTTGATTCACGCAACTCCTGGCGTGCAGC
____________________________________________________________
consensus CTGCATCATGGCCAAATTCTGGAAATCCAGGTTTGATTCACGCAACTCCTGGCGTGCAGC
. : . : . : . : . : . :
rJMSF038A21+ TCGTGAAAGGTGGAGATTCTCTTGGCCAGCAATACAACACCCCGCATTCTGTCATTTCTG
rJMSF021A14+ TCGTGAAAGGTGGAGATTCTCTTGGCCAGCAATACAACACCCCGCATTCTGTCATTTCTG
rJMSF033A14+ TCGTGAAAGGTGGAGATTCTCTTGGCCAGCAATACAACACCCC-CATTCTGTCATTTCTG
rJMFF006A11+ TCGTGAAAGGTGGAGATTCTCTTGGCCAGCAATACAACACCCCGCATTCTGTCATTTCTG
rJMFF015H15+ TCGTGAAAGGTGGAGATTCTCTTGGCCAGCAATACAACACCCCGCATTCTGTCATTTCTG
rJMFF009D11+ TCGTGAAAGGTGGAGATTCTCTTGGCCAGCAATACAACACCCCGCATTCTGTCATTTCTG
____________________________________________________________
consensus TCGTGAAAGGTGGAGATTCTCTTGGCCAGCAATACAACACCCCGCATTCTGTCATTTCTG
. : . : . : . : . : . :
rJMSF038A21+ AACGAGGCAGTGACATAATTATCGTTGGTCGTGGGATCATAAAGGCCGCTAACCCCTTAG
rJMSF021A14+ AACGAGGCAGTGACATAATTATCGTTGGTCGTGGGATCATAAAGGCCGCTAACCCCTTAG
rJMSF033A14+ AACGAGGCAGTGACATAATTATCGTTGGTCGTGGGATCATAAAGGCCGCTAACCCCTTAG
rJMFF006A11+ AACGAGGCAGTGACATAATTATCGTTGGTCGTGGGATCATAAAGGCCGCTAACCCCTTAG
rJMFF015H15+ AACGAGGCAGTGACATAATTATCGTTGGTCGTGGGATCATAAAGGCCGCTAACCCCTTAG
rJMFF009D11+ AACGAGGCAGTGACATAATTATCGTTGGTCGTGGGATCATAAAGGCCGCTAACCCCTTAG
____________________________________________________________
consensus AACGAGGCAGTGACATAATTATCGTTGGTCGTGGGATCATAAAGGCCGCTAACCCCTTAG
. : . : . : . : . : . :
rJMSF038A21+ AGGCAGCTCGAGAATACAGGCTCCAAGGCTGGGATGCATATTTGTCTAACTGTAAATGAG
rJMSF021A14+ AGGCAGCTCGAGAATACAGGCTCCAAGGCTGGGATGCATATTTGTCTAACTGTAAATGAG
rJMSF033A14+ AGGCAGCTCGAGAATACAGGCTCCAAGGCTGGGATGCATATTTGTCTAACTGTAAATGAG
rJMFF006A11+ AGGCAGCTCGAGAATACAGGCTCCAAGGCTGGGATGCATATTTGTCTAACTGTAAATGAG
rJMFF015H15+ AGGCAGCTCGAGAATACAGGCTCCAAGGCTGGGATGCATATTTGTCTAACTGTAAGTGAG
rJMFF009D11+ AGGCAGCTCGAGAATACAGGCTCCAAGGCTGGGATGCATATTTGTCTAACTGTAAGTGAG
____________________________________________________________
consensus AGGCAGCTCGAGAATACAGGCTCCAAGGCTGGGATGCATATTTGTCTAACTGTAAATGAG
. : . : . : . : . : . :
rJMSF038A21+ AATGGAGGGATGCTACTTCGATGCCATCTTGGAATAAATTTAGAAAA-CAAGACATGTAA
rJMSF021A14+ AATGGAGGGATGCTACTTCGATGCCATCTTGGAATAAATTTAGAAAACCAAGACATGTAA
rJMSF033A14+ AATGGAGGGATGCTACTTCGATGCCATCTTGGAATAAATTTAGAAAA-CAAGACATGTAA
rJMFF006A11+ AATGGAGGGATGCTACTTCGATGCCATCTTGGAATAAATTTAGAAAA-CAAGACATGTAA
rJMFF015H15+ AATGGAGGGATGCTACTTCGATGCCATCTTGGAATAAATTTAGAAAA-CAAGACATGTAA
rJMFF009D11+ AATGGAGGGATGCTACTTCGATGCCATCTTGGAATAAATTTAGAAAA-CAAGACATGTAA
____________________________________________________________
consensus AATGGAGGGATGCTACTTCGATGCCATCTTGGAATAAATTTAGAAAA-CAAGACATGTAA
. : . : . : . : . : . :
rJMSF038A21+ TATTACTACCATTTGGTTTGATATCAAATG
rJMSF021A14+ TATTACTACCATTTGGTTTGATATCAAATGGAGGATTT
rJMSF033A14+ TATTACTACCATTTGGTTTGATATCAAATGGAGGATTT
rJMFF006A11+ TATTACTACCATTTGGTTTGATATCAAATGGAGGATTTTCTGTGCAATTTAATGA
rJMFF015H15+ TATTACTACCATTTGGTTTGATATCAAATGGAGGATTTTCTGTGCAATTTAATGA
rJMFF009D11+ TATTACTACCATTTGGTTTGATATCAAATGGAGGATTTTCTGTGCAATTTAATGAATGAA
____________________________________________________________
consensus TATTACTACCATTTGGTTTGATATCAAATGGAGGATTTTCTGTGCAATTTAATGAATGAA