Contig 001050:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006A11Sequence595004462 (6)gb|AAF86340.1|AF277455_19e-73UMP synthase [Nicotiana plumbaginifolia]785001050 (6)gb|AAF86340.1|AF277455_13e-129UMP synthase [Nicotiana plumbaginifolia]
JMFF009D11Sequence552004462 (6)ref|XP_006362855.1|4e-84PREDICTED: uridine 5'-monophosphate synthase-like [Solanum tuberosum]743001050 (6)gb|AAF86340.1|AF277455_13e-119UMP synthase [Nicotiana plumbaginifolia]
JMFF015H15Sequence548004462 (6)ref|XP_006362855.1|3e-82PREDICTED: uridine 5'-monophosphate synthase-like [Solanum tuberosum]641001050 (6)ref|XP_011091831.1|1e-93PREDICTED: uridine 5'-monophosphate synthase [Sesamum indicum]
JMSF021A14Sequence676004462 (6)ref|XP_006362855.1|2e-100PREDICTED: uridine 5'-monophosphate synthase-like [Solanum tuberosum]806001050 (6)ref|XP_009606895.1|6e-138PREDICTED: uridine 5'-monophosphate synthase [Nicotiana tomentosiformis]
JMSF033A14Sequence635004462 (6)ref|XP_006362855.1|8e-103PREDICTED: uridine 5'-monophosphate synthase-like [Solanum tuberosum]728001050 (6)ref|XP_011091831.1|4e-90PREDICTED: uridine 5'-monophosphate synthase [Sesamum indicum]
JMSF038A21Sequence685004462 (6)gb|AAF86340.1|AF277455_11e-96UMP synthase [Nicotiana plumbaginifolia]875001050 (6)ref|XP_009606895.1|9e-153PREDICTED: uridine 5'-monophosphate synthase [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF038A21+                                                                GGCCAG
                      ____________________________________________________________
consensus                                                                   GGCCAG
 
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rJMSF038A21+          GGTGCCATTTNGGGGAGAGGGCTAAGATAGCAAAAAACCCTACAGGGAAGAGGCTATTTG
                      ____________________________________________________________
consensus             GGTGCCATTTNGGGGAGAGGGCTAAGATAGCAAAAAACCCTACAGGGAAGAGGCTATTTG
 
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rJMSF038A21+          AGATAATGGTGCAGAAGGAAACTAACTTGTGTTTGTCTGCTGATGTCTCTACTGCAGCTG
rJMSF021A14+                      AGAAGGAAACTAACTTGTGTTTGTCTGCTGATGTCTCTACTGCAGCTG
rJMFF006A11+                                                            ACTGCAGCTG
                      ____________________________________________________________
consensus             AGATAATGGTGCAGAAGGAAACTAACTTGTGTTTGTCTGCTGATGTCTCTACTGCAGCTG
 
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rJMSF038A21+          CATTGCTTGATATTGCTGAAAAGGTTGGGCCAGAAATTTGCATGTTGAAAACCCATGTTG
rJMSF021A14+          CATTGCTTGATATTGCTGAAAAGGTTGGGCCAGAAATTTGCATGTTGAAAACCCATGTTG
rJMSF033A14+                                     GGCCAGAAATTTGCATGTTG-AAACCCATGTTG
rJMFF006A11+          CATTGCTTGATATTGCTGAAAAGGTTGGGCCAGAAATTTGCATGTTGAAAACCCATGTTG
rJMFF009D11+                                              TTTGCATGTTGAAAACCCATGTTG
                      ____________________________________________________________
consensus             CATTGCTTGATATTGCTGAAAAGGTTGGGCCAGAAATTTGCATGTTGAAAACCCATGTTG
 
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rJMSF038A21+          ACATATTGCCAGATTTCACCCCAGATTTTGGCTCTAAACTTCGATCTATTGCAGAGAAGC
rJMSF021A14+          ACATATTGCCAGATTTCACCCCAGATTTTGGCTCTAAACTTCGATCTATTGCAGAGAAGC
rJMSF033A14+          ACATATTGCCAGATTTCACCCCAGATTTTGGCTCTAAACTTCGATCTATTGCAGAGAAGC
rJMFF006A11+          ACATATTGCCAGATTTCACCCCAGATTTTGGCTCTAAACTTCGATCTATTGCAGAGAAGC
rJMFF009D11+          ACATATTGCCAGATTTCACCCCAGATTTTGGCTCTAAACTTCGATCTATTGCAGAGAAGC
                      ____________________________________________________________
consensus             ACATATTGCCAGATTTCACCCCAGATTTTGGCTCTAAACTTCGATCTATTGCAGAGAAGC
 
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rJMSF038A21+          ATAATTTCTTAATCTTTGAAGATCGCAAGTTTGCTGACATTGGCAACACAGTCACAATGC
rJMSF021A14+          ATAATTTCTTAATCTTTGAAGATCGCAAGTTTGCTGACATTGGCAACACAGTCACAATGC
rJMSF033A14+          ATAATTTCTTAATCTTTGAAGATCGCAAGTTTGCTGACATTGGCAACACAGTCACAATGC
rJMFF006A11+          ATAATTTCTTAATCTTTGAAGATCGCAAGTTTGCTGACATTGGCAACACAGTCACAATGC
rJMFF015H15+                       CTTTGAAGATCGCAAGTTTGCTGACATTGGCAACACAGTCACAATGC
rJMFF009D11+          ATAATTTCTTAATCTTTGAAGATCGCAAGTTTGCTGACATTGGCAACACAGTCACAATGC
                      ____________________________________________________________
consensus             ATAATTTCTTAATCTTTGAAGATCGCAAGTTTGCTGACATTGGCAACACAGTCACAATGC
 
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rJMSF038A21+          AATATGAAGGTGGTATCTTCCGTATATTGGATTGGGCAGACATAGTAAACGCCCATATTA
rJMSF021A14+          AATATGAAGGTGGTATCTTCCGTATATTGGATTGGGCAGACATAGTAAACGCCCATATTA
rJMSF033A14+          AATATGAAGGTGGTATCTTCCGTATATTGGATTGGGCAGACATAGTAAACGCCCATATTA
rJMFF006A11+          AATATGAAGGTGGTATCTTCCGTATATTGGATTGGGCAGACATAGTAAACGCCCATATTA
rJMFF015H15+          AATATGAAGGTGGTATCTTCCGTATATTGGATTGGGCAGACATAGTAAACGCCCATATTA
rJMFF009D11+          AATATGAAGGTGGTATCTTCCGTATATTGGATTGGGCAGACATAGTAAACGCCCATATTA
                      ____________________________________________________________
consensus             AATATGAAGGTGGTATCTTCCGTATATTGGATTGGGCAGACATAGTAAACGCCCATATTA
 
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rJMSF038A21+          TCCCGGGTCCAGGAATAGTGGATGGGCTGAAACTGAAGGGTTTGCCCCGTGGGAGAGGCC
rJMSF021A14+          TCCCGGGTCCAGGAATAGTGGATGGGCTGAAACTGAAGGGTTTGCCCCGTGGGAGAGGCC
rJMSF033A14+          TCCCGGGTCCAGGAATAGTGGATGGGCTGAAACTGAAGGGTTTGCCCCGTGGGAGAGGCC
rJMFF006A11+          TCCCGGGTCCAGGAATAGTGGATGGGCTGAAACTGAAGGGTTTGCCCCGTGGGAGAGGCC
rJMFF015H15+          TCCCGGGTCCAGGAATAGTGGATGGGCTGAAACTGAAGGGTTTGCCCCGTGGGAGAGGCC
rJMFF009D11+          TCCCGGGTCCAGGAATAGTGGATGGGCTGAAACTGAAGGGTTTGCCCCGTGGGAGAGGCC
                      ____________________________________________________________
consensus             TCCCGGGTCCAGGAATAGTGGATGGGCTGAAACTGAAGGGTTTGCCCCGTGGGAGAGGCC
 
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rJMSF038A21+          TACTGCTGCTCGCTGAAATGAGTTCCGCCGGTAACCTTGCAAAGGGAGACTATACAGCTG
rJMSF021A14+          TACTGCTGCTCGCTGAAATGAGTTCCGCCGGTAACCTTGCAAAGGGAGACTATACAGCTG
rJMSF033A14+          TACTGCTGCTCGCTGAAATGAGTTCCGCCGGTAACCTTGCAAAGGGAGACTATACAGCTG
rJMFF006A11+          TACTGCTGCTCGCTGAAATGAGTTCCGCCGGTAACCTTGCAAAGGGAGACTATACAGCTG
rJMFF015H15+          TACTGCTGCTCGCTGAAATGAGTTCCGCCGGTAACCTTGCAAAGGGAGACTATACAGCTG
rJMFF009D11+          TACTGCTGCTCGCTGAAATGAGTTCCGCCGGTAACCTTGCAAAGGGAGACTATACAGCTG
                      ____________________________________________________________
consensus             TACTGCTGCTCGCTGAAATGAGTTCCGCCGGTAACCTTGCAAAGGGAGACTATACAGCTG
 
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rJMSF038A21+          CAACTGCAAAAATTGCTGAGGATCATTCAGATTTTGTGATTGGCTTCATCTCTGTCAATC
rJMSF021A14+          CAACTGCAAAAATTGCTGAGGATCATTCAGATTTTGTGATTGGCTTCATCTCTGTCAATC
rJMSF033A14+          CAACTGCAAAAATTGCTGAGGATCATTCAGATTTTGTGATTGGCTTCATCTCTGTCAATC
rJMFF006A11+          CAACTGCAAAAATTGCTGAGGATCATTCAGATTTTGTGATTGGCTTCATCTCTGTCAATC
rJMFF015H15+          CAACTGCAAAAATTGCTGAGGATCATTCAGATTTTGTGATTGGCTTCATCTCTGTCAATC
rJMFF009D11+          CAACTGCAAAAATTGCTGAGGATCATTCAGATTTTGTGATTGGCTTCATCTCTGTCAATC
                      ____________________________________________________________
consensus             CAACTGCAAAAATTGCTGAGGATCATTCAGATTTTGTGATTGGCTTCATCTCTGTCAATC
 
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rJMSF038A21+          CTGCATCATGGCCAAATTCTGGAAATCCAGGTTTGATTCACGCAACTCCTGGCGTGCAGC
rJMSF021A14+          CTGCATCATGGCCAAATTCTGGAAATCCAGGTTTGATTCACGCAACTCCTGGCGTGCAGC
rJMSF033A14+          CTGCATCATGGCCAAATTCTGGAAATCCAGGTTTGATTCACGCAACTCCTGGCGTGCAGC
rJMFF006A11+          CTGCATCATGGCCAAATTCTGGAAATCCAGGTTTGATTCACGCAACTCCTGGCGTGCAGC
rJMFF015H15+          CTGCATCATGGCCAAATTCTGGAAATCCAGGTTTGATTCACGCAACTCCTGGCGTGCAGC
rJMFF009D11+          CTGCATCATGGCCAAATTCTGGAAATCCAGGTTTGATTCACGCAACTCCTGGCGTGCAGC
                      ____________________________________________________________
consensus             CTGCATCATGGCCAAATTCTGGAAATCCAGGTTTGATTCACGCAACTCCTGGCGTGCAGC
 
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rJMSF038A21+          TCGTGAAAGGTGGAGATTCTCTTGGCCAGCAATACAACACCCCGCATTCTGTCATTTCTG
rJMSF021A14+          TCGTGAAAGGTGGAGATTCTCTTGGCCAGCAATACAACACCCCGCATTCTGTCATTTCTG
rJMSF033A14+          TCGTGAAAGGTGGAGATTCTCTTGGCCAGCAATACAACACCCC-CATTCTGTCATTTCTG
rJMFF006A11+          TCGTGAAAGGTGGAGATTCTCTTGGCCAGCAATACAACACCCCGCATTCTGTCATTTCTG
rJMFF015H15+          TCGTGAAAGGTGGAGATTCTCTTGGCCAGCAATACAACACCCCGCATTCTGTCATTTCTG
rJMFF009D11+          TCGTGAAAGGTGGAGATTCTCTTGGCCAGCAATACAACACCCCGCATTCTGTCATTTCTG
                      ____________________________________________________________
consensus             TCGTGAAAGGTGGAGATTCTCTTGGCCAGCAATACAACACCCCGCATTCTGTCATTTCTG
 
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rJMSF038A21+          AACGAGGCAGTGACATAATTATCGTTGGTCGTGGGATCATAAAGGCCGCTAACCCCTTAG
rJMSF021A14+          AACGAGGCAGTGACATAATTATCGTTGGTCGTGGGATCATAAAGGCCGCTAACCCCTTAG
rJMSF033A14+          AACGAGGCAGTGACATAATTATCGTTGGTCGTGGGATCATAAAGGCCGCTAACCCCTTAG
rJMFF006A11+          AACGAGGCAGTGACATAATTATCGTTGGTCGTGGGATCATAAAGGCCGCTAACCCCTTAG
rJMFF015H15+          AACGAGGCAGTGACATAATTATCGTTGGTCGTGGGATCATAAAGGCCGCTAACCCCTTAG
rJMFF009D11+          AACGAGGCAGTGACATAATTATCGTTGGTCGTGGGATCATAAAGGCCGCTAACCCCTTAG
                      ____________________________________________________________
consensus             AACGAGGCAGTGACATAATTATCGTTGGTCGTGGGATCATAAAGGCCGCTAACCCCTTAG
 
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rJMSF038A21+          AGGCAGCTCGAGAATACAGGCTCCAAGGCTGGGATGCATATTTGTCTAACTGTAAATGAG
rJMSF021A14+          AGGCAGCTCGAGAATACAGGCTCCAAGGCTGGGATGCATATTTGTCTAACTGTAAATGAG
rJMSF033A14+          AGGCAGCTCGAGAATACAGGCTCCAAGGCTGGGATGCATATTTGTCTAACTGTAAATGAG
rJMFF006A11+          AGGCAGCTCGAGAATACAGGCTCCAAGGCTGGGATGCATATTTGTCTAACTGTAAATGAG
rJMFF015H15+          AGGCAGCTCGAGAATACAGGCTCCAAGGCTGGGATGCATATTTGTCTAACTGTAAGTGAG
rJMFF009D11+          AGGCAGCTCGAGAATACAGGCTCCAAGGCTGGGATGCATATTTGTCTAACTGTAAGTGAG
                      ____________________________________________________________
consensus             AGGCAGCTCGAGAATACAGGCTCCAAGGCTGGGATGCATATTTGTCTAACTGTAAATGAG
 
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rJMSF038A21+          AATGGAGGGATGCTACTTCGATGCCATCTTGGAATAAATTTAGAAAA-CAAGACATGTAA
rJMSF021A14+          AATGGAGGGATGCTACTTCGATGCCATCTTGGAATAAATTTAGAAAACCAAGACATGTAA
rJMSF033A14+          AATGGAGGGATGCTACTTCGATGCCATCTTGGAATAAATTTAGAAAA-CAAGACATGTAA
rJMFF006A11+          AATGGAGGGATGCTACTTCGATGCCATCTTGGAATAAATTTAGAAAA-CAAGACATGTAA
rJMFF015H15+          AATGGAGGGATGCTACTTCGATGCCATCTTGGAATAAATTTAGAAAA-CAAGACATGTAA
rJMFF009D11+          AATGGAGGGATGCTACTTCGATGCCATCTTGGAATAAATTTAGAAAA-CAAGACATGTAA
                      ____________________________________________________________
consensus             AATGGAGGGATGCTACTTCGATGCCATCTTGGAATAAATTTAGAAAA-CAAGACATGTAA
 
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rJMSF038A21+          TATTACTACCATTTGGTTTGATATCAAATG                              
rJMSF021A14+          TATTACTACCATTTGGTTTGATATCAAATGGAGGATTT                      
rJMSF033A14+          TATTACTACCATTTGGTTTGATATCAAATGGAGGATTT                      
rJMFF006A11+          TATTACTACCATTTGGTTTGATATCAAATGGAGGATTTTCTGTGCAATTTAATGA     
rJMFF015H15+          TATTACTACCATTTGGTTTGATATCAAATGGAGGATTTTCTGTGCAATTTAATGA     
rJMFF009D11+          TATTACTACCATTTGGTTTGATATCAAATGGAGGATTTTCTGTGCAATTTAATGAATGAA
                      ____________________________________________________________
consensus             TATTACTACCATTTGGTTTGATATCAAATGGAGGATTTTCTGTGCAATTTAATGAATGAA