Contig 001049:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP002B01Sequence562001049 (7)ref|XP_009595630.1|1e-94PREDICTED: 4-coumarate--CoA ligase-like 9 [Nicotiana tomentosiformis]
JMFF008N10Sequence536011485 (6)ref|XP_006351482.1|1e-41PREDICTED: 4-coumarate--CoA ligase-like 9-like [Solanum tuberosum]780001049 (7)emb|CDP15004.1|5e-100unnamed protein product [Coffea canephora]
JMSF016O12Sequence491011485 (6)ref|XP_006351482.1|2e-43PREDICTED: 4-coumarate--CoA ligase-like 9-like [Solanum tuberosum]747001049 (7)ref|XP_009609463.1|2e-105PREDICTED: 4-coumarate--CoA ligase-like 9 [Nicotiana tomentosiformis] ref|XP_009
JMSF037H12Sequence678011485 (6)ref|XP_009790448.1|4e-73PREDICTED: 4-coumarate--CoA ligase-like 9 [Nicotiana sylvestris]772001049 (7)ref|XP_009595630.1|5e-110PREDICTED: 4-coumarate--CoA ligase-like 9 [Nicotiana tomentosiformis]
JMSF037P13Sequence675011485 (6)ref|XP_009790448.1|4e-73PREDICTED: 4-coumarate--CoA ligase-like 9 [Nicotiana sylvestris]756001049 (7)ref|XP_009609463.1|8e-98PREDICTED: 4-coumarate--CoA ligase-like 9 [Nicotiana tomentosiformis] ref|XP_009
JMSF048C08Sequence706011485 (6)ref|XP_009595630.1|1e-78PREDICTED: 4-coumarate--CoA ligase-like 9 [Nicotiana tomentosiformis]788001049 (7)ref|XP_009595630.1|7e-110PREDICTED: 4-coumarate--CoA ligase-like 9 [Nicotiana tomentosiformis]
JMSF049M04Sequence684011485 (6)ref|XP_009595630.1|4e-76PREDICTED: 4-coumarate--CoA ligase-like 9 [Nicotiana tomentosiformis]758001049 (7)ref|XP_009595630.1|4e-106PREDICTED: 4-coumarate--CoA ligase-like 9 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMCP002B01-                          AGTACGACCTCAGCTCCGTCAAGTTGCTGGCATGCGGCGGCGCC
                      ____________________________________________________________
consensus                             AGTACGACCTCAGCTCCGTCAAGTTGCTGGCATGCGGCGGCGCC
 
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rJMCP002B01-          CCGCTCGGAAGGGAGGTCGCCGGACGGTTCAATGCCAGGTTCCCCAACGTGGATATTTCT
rJMSF048C08+                         GTCGCCGGACNGTTCCATGCCAGGTTCCCCAACGTGGATATTTCT
rJMSF016O12+                                                                     T
                      ____________________________________________________________
consensus             CCGCTCGGAAGGGAGGTCGCCGGACGGTTCCATGCCAGGTTCCCCAACGTGGATATTTCT
 
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rJMCP002B01-          CAGGGCTATGGTCTGACTGAGACAACCGGCGGGACAACGGGGATGATAAGTCCCGAGGAA
rJMSF048C08+          CAGGGCTATGGTCTGACTGAGACAACCGGCGGGACAACGGGGATGATAAGTCCCGAGGAA
rJMSF016O12+          CAGGGCTATGGTCTGACTGAGACAACCGGCGGGACAACGGGGATGATAAGTCCCGAGGAA
rJMSF037H12+                             AGACAACCGGCGGGACAACGGGGATGATAAGTCCCGAGGAA
rJMSF049M04+                                               CGGGGATGATAAGTCCCGAGGAA
rJMSF037P13+                                                  GGATGATAAGTCCCGAGGAA
                      ____________________________________________________________
consensus             CAGGGCTATGGTCTGACTGAGACAACCGGCGGGACAACGGGGATGATAAGTCCCGAGGAA
 
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rJMCP002B01-          TGTCAAAA-GTATGGTTCTGCTGGCCGCATTAATTCAGTCGTGGAAGCTAAGATAGTCGA
rJMSF048C08+          TGTCAAAA-GTATGGTTCTGCTGGCCGCATTAATTCAGTCGTGGAAGCTAAGATAGTCGA
rJMSF016O12+          TGTCAAAA-GTATGGTTCTGCTGGCCGCATTAATTCAGTCGTGGAAGCTAAGATAGTCGA
rJMSF037H12+          TGTCAAAA-GTATGGTTCTGCTGGCCGCATTAATTCAGTCGTGGAAGCTAAGATAGTCGA
rJMSF049M04+          TGTCAAAA-GTATGGTTCTGCTGGCCGCATTAATTCAGTCGTGGAAGCTAAGATAGTCGA
rJMSF037P13+          TGTCAAAANGTATGGTTTTGCTGGCCGCATT-ATTCAGTCGTGGAAGCTAAGATAGTCGA
rJMFF008N10+                         TTCTGCTGNCCGCATTAATTCAGTCGTGGAAGCTAAGATAGTCGA
                      ____________________________________________________________
consensus             TGTCAAAA-GTATGGTTCTGCTGGCCGCATTAATTCAGTCGTGGAAGCTAAGATAGTCGA
 
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rJMCP002B01-          TCCTGAAACTGGGGAAGCATCGCCTCCTGGCCATCGTGGTGAGCTGTGGCTAgctccGCC
rJMSF048C08+          TCCTGAAACTGGGGAAGCATTGCCTCCTGGCCATCGTGGTGAGCTGTGGCTACGAGGGCC
rJMSF016O12+          TCCTGAAACTGGGGAAGCATTGCCTCCTGGCCATCGTGGTGAGCTGTGGCTACGAGGGCC
rJMSF037H12+          TCCTGAAACTGGGGAAGCATTGCCTCCTGGCCATCGTGGTGAGCTGTGGCTACGAGGGCC
rJMSF049M04+          TCCTGAAACTGGGGAAGCATTGCCTCCTGGCCATCGTGGTGAGCTGTGGCTACGAGGGCC
rJMSF037P13+          TCCTGAAGCTGGGGAAGCATTGCCTCCTGGCCATCGTGGTGAGCTGTGGCTACGAGGGCC
rJMFF008N10+          TCCTGAAACTGGGGAAGCATTGCCTCCTGGCCATCGTGGTGAGCTGTGGCTACGAGGGCC
                      ____________________________________________________________
consensus             TCCTGAAACTGGGGAAGCATTGCCTCCTGGCCATCGTGGTGAGCTGTGGCTACGAGGGCC
 
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rJMCP002B01-          CTTAATCATGAAAGGGTATGTTGGCGACAGATCTGCCACTTCTGCAACATTtGATTCGGA
rJMSF048C08+          CTTAATCATGAAAGGGTATGTTGGCGACAGATCTGCCACTTCTGCAACATTAGATTCGGA
rJMSF016O12+          CTTAATCATGAAAGGGTATGTTGGCGACAGATCTGCCACTTCTGCAACATTAGATTCGGA
rJMSF037H12+          CTTAATCATGAAAGGGTATGTTGGCGACAGATCTGCCACTTCTGCAACATTAGATTCGGA
rJMSF049M04+          CTTAATCATGAAAGGGTATGTTGGCGACAGATCTGCCACTTCTGCAACATTAGATTCGGA
rJMSF037P13+          CTTAATCATGAAAGGGTATGTTGGCGACAGATCTGCCACTTCTGCAACATTAGATTCGGA
rJMFF008N10+          CTTAATCATGAAAGGGTATGTTGGCGACAGATCTGCCACTTCTGCAACATTAGATTCGGA
                      ____________________________________________________________
consensus             CTTAATCATGAAAGGGTATGTTGGCGACAGATCTGCCACTTCTGCAACATTAGATTCGGA
 
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rJMCP002B01-          AGGATGGCTAAGAACGGGGGATCTCTGCTATTTCGACTCGGAAGGGTTCTTGTTTGTTGT
rJMSF048C08+          AGGATGGCTAAGAACGGGGGATCTCTGCTATTTCGACTCGGAAGGGTTCTTGTTTGTTGT
rJMSF016O12+          AGGATGGCTAAGAACGGGGGATCTCTGCTATTTCGACTCGGAAGGGTTCTTGTTTGTTGT
rJMSF037H12+          AGGATGGCTAAGAACGGGGGATCTCTGCTATTTCGACTCGGAAGGGTTCTTGTTTGTTGT
rJMSF049M04+          AGGATGGCTAAGAACGGGGGATCTCTGCTATTTCGACTCGGAAGGGTTCTTGTTTGTTGT
rJMSF037P13+          AGGATGGCTAAGAACGGGGGATCTCTGCTATTTCGACTCGGAAGGGTTCTTGTTTGTTGT
rJMFF008N10+          AGGATGGCTAAGAACGGGGGATCTCTGCTATTTCGACTCGGAAGGGTTCTTGTTTGTTGT
                      ____________________________________________________________
consensus             AGGATGGCTAAGAACGGGGGATCTCTGCTATTTCGACTCGGAAGGGTTCTTGTTTGTTGT
 
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rJMCP002B01-          GGACAGGTTGAAGGAACTAATCAAATACAAGGCCTTTCAGcTTCCCCCTGCTGAGTTAGA
rJMSF048C08+          GGACAGGTTGAAGGAACTAATCAAATACAAGGCCTTTCAGGTTCCCCCTGCTGAGTTAGA
rJMSF016O12+          GGACAGGTTGAAGGAACTAATCAAATACAAGGCCTTTCAGGTTCCCCCTGCTGAGTTAGA
rJMSF037H12+          GGACAGGTTGAAGGAACTAATCAAATACAAGGCCTTTCAGGTTCCCCCTGCTGAGTTAGA
rJMSF049M04+          GGACAGGTTGAAGGAACTAATCAAATACAAGGCCTTTCAGGTTCCCCCTGCTGAGTTAGA
rJMSF037P13+          GGACAGGTTGAAGGAACTAATCAAATACAAGGCCTTTCAGGTTCCCCCTGCTGAGTTAGA
rJMFF008N10+          GGACAGGTTGAAGGAACTAATCAAATACAAGGCCTTTCAGGTTCCCCCTGCTGAGTTAGA
                      ____________________________________________________________
consensus             GGACAGGTTGAAGGAACTAATCAAATACAAGGCCTTTCAGGTTCCCCCTGCTGAGTTAGA
 
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rJMCP002B01-          ACATCTGCTTCAGTCAATCCCTGATGTTGCTGATGCCGCTGTTATTCCATTTCCTGATGA
rJMSF048C08+          ACATCTGCTTCAGTCAATCCCTGATGTTGCTGATGCCGCTGTTATTCCATTTCCTGATGA
rJMSF016O12+          ACATCTGCTTCAGTCAATCCCTGATGTTGCTGATGCCGCTGTTATTCCATTTCCTGATGA
rJMSF037H12+          ACATCTGCTTCAGTCAATCCCTGATGTTGCTGATGCCGCTGTTATTCCATTTCCTGATGA
rJMSF049M04+          ACATCTGCTTCAGTCAATCCCTGATGTTGCTGATGCCGCTGTTATTCCATTTCCTGATGA
rJMSF037P13+          ACATCTGCTTCAGTCAATCCCTGATGTTGCTGATGCCGCTGTTATTCCATTTCCTGATGA
rJMFF008N10+          ACATCTGCTTCAGTCAATCCCTGATGTTGCTGATGCCGCTGTTATTCCATTTCCTGATGA
                      ____________________________________________________________
consensus             ACATCTGCTTCAGTCAATCCCTGATGTTGCTGATGCCGCTGTTATTCCATTTCCTGATGA
 
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rJMCP002B01-          AGAtcgtGGACAGATTCCAATGGCCTATGTTGTGAGAAA                     
rJMSF048C08+          AGAAGCAGGACAGATTCCAATGGCCTATGTTGTGAGAAAACCTGGAAGCAACATCACAGA
rJMSF016O12+          AGAAGCAGGACAGATTCCAATGGCCTATGTTGTGAGAAAACCTGGAAGCAACATCACAGA
rJMSF037H12+          AGAAGCAGGACAGATTCCAATGGCCTATGTTGTGAGAAAACCTGGAAGCAACATCACAGA
rJMSF049M04+          AGAAGCAGGACAGATTCCAATGGCCTATGTTGTGAGAAAACCTGGAAGCAACATCACAGA
rJMSF037P13+          AGAAGCAGGACAGATTCCAATGGCCTATGTTGTGAGAAAACCTGGAAGCAACATCACAGA
rJMFF008N10+          AGAAGCAGGACAGATTCCAATGGCCTATGTTGTGAGAAAACCTGGAAGCAACATCACAGA
                      ____________________________________________________________
consensus             AGAAGCAGGACAGATTCCAATGGCCTATGTTGTGAGAAAACCTGGAAGCAACATCACAGA
 
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rJMSF048C08+          AACTCAGATTATGGATACTATTGCAAAACAGGTTGCACCTTACAAAAAGATCAGACGTGT
rJMSF016O12+          AACTCAGATTATGGATACTATTGCAAAACAGGTTGCACCTTACAAAAAGATCAGACGTGT
rJMSF037H12+          AACTCAGATTATGGATACTATTGCAAAACAGGTTGCACCTTACAAAAAGATCAGACGTGT
rJMSF049M04+          AACTCAGATTATGGATACTATTGCAAAACAGGTTGCACCTTACAAAAAGATCAGACGTGT
rJMSF037P13+          AACTCAGATTATGGATACTATTGCAAAACAGGTTGCACCTTACAAAAAGATCAGACGTGT
rJMFF008N10+          AACTCAGATTATGGATACTATTGCAAAACAGGTTGCACCTTACAAAAAGATCAGACGTGT
                      ____________________________________________________________
consensus             AACTCAGATTATGGATACTATTGCAAAACAGGTTGCACCTTACAAAAAGATCAGACGTGT
 
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rJMSF048C08+          TTCATTCATCAGCGCGATTCCTAAATCTCCAGCCGGAAAGATCTTGAGAAGAGAACTGGT
rJMSF016O12+          TTCATTCATCAGCGCGATTCCTAAATCTCCAGCCGGAAAGATCTTGAGAAGAGAACTGGT
rJMSF037H12+          TTCATTCATCAGCGCGATTCCTAAATCTCCAGCCGGAAAGATCTTGAGAAGAGAACTGGT
rJMSF049M04+          TTCATTCATCAGCGCGATTCCTAAATCTCCAGCCGGAAAGATCTTGAGAAGAGAACTGGT
rJMSF037P13+          TTCATTCATCAGCGCGATTCCTAAATCTCCAGCCGGAAAGATCTTGAGAAGAGAACTGGT
rJMFF008N10+          TTCATTCATCAGCGCGATTCCTAAATCTCCAGCCGGAAAGATCTTGAGAAGAGAACTGGT
                      ____________________________________________________________
consensus             TTCATTCATCAGCGCGATTCCTAAATCTCCAGCCGGAAAGATCTTGAGAAGAGAACTGGT
 
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rJMSF048C08+          TGCGCTTGCTGTTTCTGCTGCTTCATCCAAACTATGATACCAAAAAATTATTCTAATGTT
rJMSF016O12+          TGCGCTTGCTGTTTCTGCTGCTTCATCCAAACTATGATACCAAAAAATTATTCTAATGTT
rJMSF037H12+          TGCGCTTGCTGTTTCTGCTGCTTCATCCAAACTATGATACCAAAAAATTATTCTAATGTT
rJMSF049M04+          TGCGCTTGCTGTTTCTGCTGCTTCATCCAAACTATGATACCAAAAAATTATTCTAATGTT
rJMSF037P13+          TGCGCTTGCTGTTTCTGCTGCTTCATCCAAACTATGATACCAAAAAATTATTCTAATGTT
rJMFF008N10+          TGCGCTTGCTGTTTCTGCTGCTTCATCCAAACTATGATACCAAAAAATTATTCTAATGTT
                      ____________________________________________________________
consensus             TGCGCTTGCTGTTTCTGCTGCTTCATCCAAACTATGATACCAAAAAATTATTCTAATGTT
 
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rJMSF048C08+          GGCACCTTGTGAAACTTCTTGTGACTGAATAATGTTTATAATTAGAATATATGAAGTGGT
rJMSF016O12+          GGCACCTTGTGAAACTTCTTGTGACTGAATAATGTTTATAATTAGAATATATGAAGTGGT
rJMSF037H12+          GGCACCTTGTGAAACTTCTTGTGACTGAATAATGTTTATAATTAGAATATATGAAGTGGT
rJMSF049M04+          GGCACCTTGTGAAACTTCTTGTGACTGAATAATGTTTATAATTAGAATATATGAAGTGGT
rJMSF037P13+          GGCACCTTGTGAAACTTCTTGTGACTGAATAATGTTTATAATTAGAATATATGAAGTGGT
rJMFF008N10+          GGCACCTTGTGAAACTTCTTGTGACTGAATAATGTTTATAATTAGAATATATGAAGTGGT
                      ____________________________________________________________
consensus             GGCACCTTGTGAAACTTCTTGTGACTGAATAATGTTTATAATTAGAATATATGAAGTGGT
 
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rJMSF048C08+          AGTTAAGTAGTTAAGTATAGTAGT                                    
rJMSF016O12+          AGTTAAGTAGTTAAGTATAGTAGTATG                                 
rJMSF037H12+          AGTTAAGTAGTTAAGTATAGTAGTATGTTTTTAGGTATAATTCAATTGATCAATTGATTA
rJMSF049M04+          AGTTAAGTAGTTAAGTATAGTAGTATGTTTTTAGGTATAATTCAATTGATCAATTGATTA
rJMSF037P13+          AGTTAAGTAGTTAAGTATAGTAGTATGTTTTTAGGTATAATTCAATTGATCAATTGATTA
rJMFF008N10+          AGTTAAGTAGTTAAGTATAGTAGTATGTTTTTAGGTATAATTCAATTGATCAATTGATTA
                      ____________________________________________________________
consensus             AGTTAAGTAGTTAAGTATAGTAGTATGTTTTTAGGTATAATTCAATTGATCAATTGATTA
 
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rJMSF037H12+          ACTCAAC                                                     
rJMSF049M04+          ACTCAAC                                                     
rJMSF037P13+          ACTCAAC                                                     
rJMFF008N10+          ACTCAACAAGTTGATGGTTTTGTTTTGTTCCGAGTATAAATGTATAAGGTTAATCCCATC
                      ____________________________________________________________
consensus             ACTCAACAAGTTGATGGTTTTGTTTTGTTCCGAGTATAAATGTATAAGGTTAATCCCATC