Contig 001048:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008M12Sequence602004532 (5)gb|KJB16216.1|4e-47hypothetical protein B456_002G218100 [Gossypium raimondii] gb|KJB16219.1| hypoth705001048 (2)ref|XP_009598595.1|2e-62PREDICTED: shaggy-related protein kinase kappa [Nicotiana tomentosiformis]
JMFF018E21Sequence586004532 (5)emb|CDO97626.1|6e-25unnamed protein product [Coffea canephora]727001048 (2)ref|XP_009598595.1|6e-88PREDICTED: shaggy-related protein kinase kappa [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF018E21+                                                 CCTGGAGAGAGTGGGGTTGAC
                      ____________________________________________________________
consensus                                                    CCTGGAGAGAGTGGGGTTGAC
 
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rJMFF018E21+          CAACTAGTGGAGATTATAAAGGTCTTAGGAACACCTACTAGAGAGGAGATCAAATGCATG
                      ____________________________________________________________
consensus             CAACTAGTGGAGATTATAAAGGTCTTAGGAACACCTACTAGAGAGGAGATCAAATGCATG
 
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rJMFF018E21+          AACCCAAACTACACCGAATTCAAATTTCCACAGATAAAACCCCATCCATGGCACAAGGTT
                      ____________________________________________________________
consensus             AACCCAAACTACACCGAATTCAAATTTCCACAGATAAAACCCCATCCATGGCACAAGGTT
 
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rJMFF018E21+          TTTCAAAAACGTTTGCCTCCTGAAGCAGTTGACTTGATCTCTCGATTTTTCCAGTACTCC
                      ____________________________________________________________
consensus             TTTCAAAAACGTTTGCCTCCTGAAGCAGTTGACTTGATCTCTCGATTTTTCCAGTACTCC
 
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rJMFF018E21+          CCGCATTTGAGATGCACTGCTTTGGAGGCTTGTGTTCATCCCTTCTTTGATGAATTGAGG
                      ____________________________________________________________
consensus             CCGCATTTGAGATGCACTGCTTTGGAGGCTTGTGTTCATCCCTTCTTTGATGAATTGAGG
 
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rJMFF018E21+          GACCCAGATACCCGCCTGCCTAATGGGCGTCCTCTTCCTCCACTCTTCAATTTCAAACCT
                      ____________________________________________________________
consensus             GACCCAGATACCCGCCTGCCTAATGGGCGTCCTCTTCCTCCACTCTTCAATTTCAAACCT
 
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rJMFF018E21+          CAAGAGCTCACTGGCATCCCTCCTGAAACTCTTCGCCGCCTAATTCCTGAACATGCTCGG
rJMFF008M12+            AGAGCTCACTGGCATCCCTCCTGAAACTCTTCGCCGCCTAATTCCTGAACATGCTCGG
                      ____________________________________________________________
consensus             CAAGAGCTCACTGGCATCCCTCCTGAAACTCTTCGCCGCCTAATTCCTGAACATGCTCGG
 
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rJMFF018E21+          AGGCAGAACATATTCATGGCCTTGCGCTCCTAGTGACAAGTTGGAATTTCATTTCTCCTG
rJMFF008M12+          AGGCAGAACATATTCATGGCCTTGCGCTCCTAGTGACAAGTTGGAATTTCATTTCTCCTG
                      ____________________________________________________________
consensus             AGGCAGAACATATTCATGGCCTTGCGCTCCTAGTGACAAGTTGGAATTTCATTTCTCCTG
 
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rJMFF018E21+          TTTGCTTCAGTTGCCTCGGTTGGGCGTGCACCAACTGTAAAATGTCCTATAATCTACGAG
rJMFF008M12+          TTTGCTTCAGTTGCCTCGGTTGGGCGTGCACCAACTGTAAAATGTCCTATAATCTACGAG
                      ____________________________________________________________
consensus             TTTGCTTCAGTTGCCTCGGTTGGGCGTGCACCAACTGTAAAATGTCCTATAATCTACGAG
 
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rJMFF018E21+          GTGTTTGAAACCAAATTTGCTAGGAAACTTTGAACTGGACAACCAATGAGCGCATGTATT
rJMFF008M12+          GTGTTTGAAACCAAATTTGCTAGGAAACTTTGAACTGGACAACCAATGAGCGCATGTATT
                      ____________________________________________________________
consensus             GTGTTTGAAACCAAATTTGCTAGGAAACTTTGAACTGGACAACCAATGAGCGCATGTATT
 
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rJMFF018E21+          CTGTTCATTTTGGATGCAGAGTGTCGATAGTGCAATCACTCAACACCCTTTCACGCACAC
rJMFF008M12+          CTGTTCATTTTGGATGCAGAGTGTCGATAGTGCAATCACTCAACACCCTTTCACGCACAC
                      ____________________________________________________________
consensus             CTGTTCATTTTGGATGCAGAGTGTCGATAGTGCAATCACTCAACACCCTTTCACGCACAC
 
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rJMFF018E21+          AAGGGAGAGCCTAAATGGTAGTGCAAAGCCAAGAGAAGCTGGTGATTTTGTTTGTAGTTA
rJMFF008M12+          AAGGGAGAGCCTAAATGGTAGTGCAAAGCCAAGAGAAGCTGGTGATTTTGTTTGTAGTTA
                      ____________________________________________________________
consensus             AAGGGAGAGCCTAAATGGTAGTGCAAAGCCAAGAGAAGCTGGTGATTTTGTTTGTAGTTA
 
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rJMFF018E21+          TGTGGGTAATAACAATATAACATTATAGCTGAGTGTATTTTTCCAC              
rJMFF008M12+          TGTGGGTAATAACAATATAACATTATAGCTGAGTGTATTTTTCCACTGATAATACCGCTT
                      ____________________________________________________________
consensus             TGTGGGTAATAACAATATAACATTATAGCTGAGTGTATTTTTCCACTGATAATACCGCTT
 
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rJMFF008M12+          TCCTGACTTCTGTGTTTCCTTGGCCTTAATTTGACTGCTGTTCTGGTGTTGAGTTATGTA
                      ____________________________________________________________
consensus             TCCTGACTTCTGTGTTTCCTTGGCCTTAATTTGACTGCTGTTCTGGTGTTGAGTTATGTA