Contig 001043:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP016E03Sequence611001043 (4)ref|XP_009757482.1|2e-67PREDICTED: ATP-dependent 6-phosphofructokinase 3, partial [Nicotiana sylvestris
JMFF007O03Sequence575012831 (3)ref|XP_006342512.1|2e-107PREDICTED: 6-phosphofructokinase 3-like [Solanum tuberosum]776001043 (4)emb|CDP08198.1|2e-67unnamed protein product [Coffea canephora]
JMSF003O08Sequence214012831 (3)ref|XP_006342512.1|6e-25PREDICTED: 6-phosphofructokinase 3-like [Solanum tuberosum]696001043 (4)emb|CDP08198.1|6e-68unnamed protein product [Coffea canephora]
JMSF018F22Sequence237012831 (3)ref|XP_006342512.1|1e-25PREDICTED: 6-phosphofructokinase 3-like [Solanum tuberosum]795001043 (4)ref|XP_009757482.1|3e-71PREDICTED: ATP-dependent 6-phosphofructokinase 3, partial [Nicotiana sylvestris

Alignment

This contig is upended


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JMCP016E03-                                                               GGGCACAT
rJMSF018F22+                             CTGGAGTTTGTTGAGNAAAGGCTGAAAGAAAATGGGCACAT
                      ____________________________________________________________
consensus                                CTGGAGTTTGTTGAGNAAAGGCTGAAAGAAAATGGGCACAT
 
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JMCP016E03-           GGTGATTGTGATAGCTGAAGGAGCAGGACAGGAACTTCTTGCCGCTGAGAGTTCAAGTTC
rJMSF018F22+          GGTGANTGTGATAGCTGAAGGAGCAGGACAGGAACTTCTTGCCGCTGAGAGTTCAAGTTC
                      ____________________________________________________________
consensus             GGTGATTGTGATAGCTGAAGGAGCAGGACAGGAACTTCTTGCCGCTGAGAGTTCAAGTTC
 
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JMCP016E03-           CAAGGCTGAGAGTGATGCTTCAGGAAACAAGCTTCTCCAAGATGTTGGAATGTGGCTTTC
rJMSF018F22+          CANGGCTGAGAGTGATGCTTCAGGAAACAAGCTTCTCCAAGATGTTGGAATGTGGCTTTC
rJMSF003O08+             GGCTGAGAGTGATGCTTCAGGAAACAAGCTTCTCCAAGATGTTGGAATGTGGCTTTC
rJMFF007O03+             GGCTGAGAGTGATGCTTCAGGAAACAAGCTTCTCCAAGATGTTGGAATGTGGCTTTC
                      ____________________________________________________________
consensus             CAAGGCTGAGAGTGATGCTTCAGGAAACAAGCTTCTCCAAGATGTTGGAATGTGGCTTTC
 
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JMCP016E03-           TCAGAAAATCttGctaTATTCTAAACAGCGGAAGTTTCCAATCACTCTTAAATATATAGA
rJMSF018F22+          TCAGAAAATCAAGGATTATTCTAAACAGCGGAAGTTTCCAATCACTCTTAAATATATAGA
rJMSF003O08+          TCAGAAAATCAAGGATTATTCTAAACAGCGGAAGTTTCCAATCACTCTTAAATATATAGA
rJMFF007O03+          TCAGAAAATCAAGGATTATTCTAAACAGCGGAAGTTTCCAATCACTCTTAAATATATAGA
                      ____________________________________________________________
consensus             TCAGAAAATCAAGGATTATTCTAAACAGCGGAAGTTTCCAATCACTCTTAAATATATAGA
 
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JMCP016E03-           TCCAACTTATATGATCCGTGCTATCCCAAGTAATGCATCTGACAACGTGTATTGCACATT
rJMSF018F22+          TCCAACTTATATGATCCGTGCTATCCCAAGTAATGCATCTGACAACGTGTATTGCACATT
rJMSF003O08+          TCCAACTTATATGATCCGTGCTATCCCAAGTAATGCATCTGACAACGTGTATTGCACATT
rJMFF007O03+          TCCAACTTATATGATCCGTGCTATCCCAAGTAATGCATCTGACAACGTGTATTGCACATT
                      ____________________________________________________________
consensus             TCCAACTTATATGATCCGTGCTATCCCAAGTAATGCATCTGACAACGTGTATTGCACATT
 
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JMCP016E03-           GCTTGCTCAAAGTACTGTGCATGGAGCGATGGCTGGGTTTACAGGCTTCACATGTGGGCT
rJMSF018F22+          GCTTGCTCAAAGTACTGTGCATGGAGCGATGGCTGGGTTTACAGGCTTCACATGTGGGCT
rJMSF003O08+          GCTTGCTCAAAGTACTGTGCATGGAGCGATGGCTGGGTTTACAGGCTTCACATGTGGGCT
rJMFF007O03+          GCTTGCTCAAAGTACTGTGCATGGAGCGATGGCTGGGTTTACAGGCTTCACATGTGGGCT
                      ____________________________________________________________
consensus             GCTTGCTCAAAGTACTGTGCATGGAGCGATGGCTGGGTTTACAGGCTTCACATGTGGGCT
 
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JMCP016E03-           TGTCAATGGTCGCCACACTTACATACCATTCAATCGCATTACTGAGCGGCAAAACAAGGT
rJMSF018F22+          TGTCAATGGTCGCCACACTTACATACCATTCAATCGCATTACTGAGCGGCAAAACAAGGT
rJMSF003O08+          TGTCAATGGTCGCCACACTTACATACCATTCAATCGCATTACTGAGCGGCAAAACAAGGT
rJMFF007O03+          TGTCAATGGTCGCCACACTTACATACCATTCAATCGCATTACTGAGCGGCAAAACAAGGT
                      ____________________________________________________________
consensus             TGTCAATGGTCGCCACACTTACATACCATTCAATCGCATTACTGAGCGGCAAAACAAGGT
 
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JMCP016E03-           TGTAATTACTGACAGGATGTGGGCTCGGCTTCTTTCTTCAACCAATCAGCCAAGCTTCTT
rJMSF018F22+          TGTAATTACTGACAGGATGTGGGCTCGGCTTCTTTCTTCAACCAATCAGCCAAGCTTCTT
rJMSF003O08+          TGTAATTACTGACAGGATGTGGGCTCGGCTTCTTTCTTCAACCAATCAGCCAAGCTTCTT
rJMFF007O03+          TGTAATTACTGACAGGATGTGGGCTCGGCTTCTTTCTTCAACCAATCAGCCAAGCTTCTT
                      ____________________________________________________________
consensus             TGTAATTACTGACAGGATGTGGGCTCGGCTTCTTTCTTCAACCAATCAGCCAAGCTTCTT
 
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JMCP016E03-           GTGTCCAAAAGAGGTGGAAAAGGTGAAAGAAGAAGAGAAATTGAAAGAACAATTGCTAGG
rJMSF018F22+          GTGTCCAAAAGAGGTGGAAAAGGTGAAAGAAGAAGAGAAATTGAAAGAACAATTGCTAGG
rJMSF003O08+          GTGTCCAAAAGAGGTGGAAAAGGTGAAAGAAGAAGAGAAATTGAAAGAACAATTGCTAGG
rJMFF007O03+          GTGTCCAAAAGAGGTGGAAAAGGTGAAAGAAGAAGAGAAATTGAAAGAACAATTGCTAGG
                      ____________________________________________________________
consensus             GTGTCCAAAAGAGGTGGAAAAGGTGAAAGAAGAAGAGAAATTGAAAGAACAATTGCTAGG
 
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JMCP016E03-           TGCGGCTAACGGCAAGACACCTGCATCTAAGACGCCAGCATTGAAATAAAGCCATTAACC
rJMSF018F22+          TGCGGCTAACGGCAAGACACCTGCATCTAAGACGCCAGCATTGAAATAAAGCCATTAACC
rJMSF003O08+          TGCGGCTAACGGCAAGACACCTGCATCTAAGACGCCAGCATTGAAATAAAGCCATTAACC
rJMFF007O03+          TGCGGCTAACGGCAAGACACCTGCATCTAAGACGCCAGCATTGAAATAAAGCCATTAACC
                      ____________________________________________________________
consensus             TGCGGCTAACGGCAAGACACCTGCATCTAAGACGCCAGCATTGAAATAAAGCCATTAACC
 
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JMCP016E03-           ACTGTAATTGATCAATTTATGCCACTTCGAATCTGTTGTGTACTTTAATACTGCTTAGAA
rJMSF018F22+          ACTGTAATTGATCAATTTATGCCACTTCGAATCTGTTGTGTACTTTAATACTGCTTAGAA
rJMSF003O08+          ACTGTAATTGATCAATTTATGCCACTTCGAATCTGTTGTGTACTTTAATACTGCTTAGAA
rJMFF007O03+          ACTGTAATTGATCAATTTATGCCACTTCGAATCTGTTGTGTACTTTAATACTGCTTAGAA
                      ____________________________________________________________
consensus             ACTGTAATTGATCAATTTATGCCACTTCGAATCTGTTGTGTACTTTAATACTGCTTAGAA
 
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JMCP016E03-           TAA                                                         
rJMSF018F22+          TAATAATTCGGCCTTGTGTAGGAACAATTTGAAGGTTGCCAGTCTGTTGCAGTGCCTCTG
rJMSF003O08+          TAATAATTCGGCCTTGTGTAGGAACAATTTGAAGGTTGCCAGTCTGTTGCAGTGCCTCTG
rJMFF007O03+          TAATAATTCGGCCTTGTGTAGGAACAATTTGAAGGTTGCCAGTCTGTTGCAGTGCCTCTG
                      ____________________________________________________________
consensus             TAATAATTCGGCCTTGTGTAGGAACAATTTGAAGGTTGCCAGTCTGTTGCAGTGCCTCTG
 
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rJMSF018F22+          CAGTGGACTATAACCCCCCCAGTAAAGTCTTTATTCTTTCTGGGTATCAGAGAACGAGAA
rJMSF003O08+          CAGTGGACTATAACCCCCCCAGTAAAGTCTTTATTCTTTCTGGGTATCAGAGAACGAGAA
rJMFF007O03+          CAGTGGACTATAACCCCCCCAGTAAAGTCTTTATTCTTTCTGGGTATCAGAGAACGAGAA
                      ____________________________________________________________
consensus             CAGTGGACTATAACCCCCCCAGTAAAGTCTTTATTCTTTCTGGGTATCAGAGAACGAGAA
 
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rJMSF018F22+          A-CTATGTTGTGTGATTATGTATTTTTTTGTATGT                         
rJMSF003O08+          ACCTATGTTGTGTGATTATGTATTTTTTTGTATGT                         
rJMFF007O03+          A-CTATGTTGTGTGATTATGTATTTTTTTGTATGTTACTTTTGCATATGTAATATGACTC
                      ____________________________________________________________
consensus             A-CTATGTTGTGTGATTATGTATTTTTTTGTATGTTACTTTTGCATATGTAATATGACTC
 
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rJMFF007O03+          ATTGTCATTTGGAAACTTCAAAAACATTTTGACTTGTTTTGCTCGAGTTGTGTTTAGTCA
                      ____________________________________________________________
consensus             ATTGTCATTTGGAAACTTCAAAAACATTTTGACTTGTTTTGCTCGAGTTGTGTTTAGTCA