Contig 001041:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007J03Sequence527001041 (4)ref|XP_008235643.1|1e-84PREDICTED: 60S ribosomal protein L14-1 [Prunus mume]712001041 (4)ref|XP_008235643.1|1e-83PREDICTED: 60S ribosomal protein L14-1 [Prunus mume]
JMFF032C07Sequence524001041 (4)ref|XP_008235643.1|1e-84PREDICTED: 60S ribosomal protein L14-1 [Prunus mume]678001041 (4)ref|XP_008235643.1|8e-84PREDICTED: 60S ribosomal protein L14-1 [Prunus mume]

Alignment

This contig is upended


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rJMFF032C07-                       ATTTTATGGTGCTTGATAATATTTCAACAATCAACATAAGATCCACC
rJMFF007J03-                  ACTTAATTTTATGGTGCTTGATAATATTTCAACAATCAACATAAGATCCACC
                      ____________________________________________________________
consensus                     ACTTAATTTTATGGTGCTTGATAATATTTCAACAATCAACATAAGATCCACC
 
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rJMFF032C07-          GCAAAAAAGTTTCCAAAAATGCATATGATGAATGATATGACAAAATTGTGTCTTTCTCGA
rJMFF007J03-          GCAAAAAAGTTTCCAAAAATGCATATGATGAATGATATGACAAAATTGTGTCTTTCTCGA
                      ____________________________________________________________
consensus             GCAAAAAAGTTTCCAAAAATGCATATGATGAATGATATGACAAAATTGTGTCTTTCTCGA
 
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rJMFF032C07-          TACAAGAGAAGCAGAAACTAAAGAGACAATCCTTGATACAAGGCAGAAGACCTAATATAA
rJMFF007J03-          TACAAGAGAAGCAGAAACTAAAGAGACAATCCTTGATACAAGGCAGAAGACCTAATATAA
                      ____________________________________________________________
consensus             TACAAGAGAAGCAGAAACTAAAGAGACAATCCTTGATACAAGGCAGAAGACCTAATATAA
 
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rJMFF032C07-          GAACATCAATATTATAAGAAAATGGATTTTAGGCTGTGCTCTCCTTCTTAAGCTTTGAAA
JMFF032C07+                           AGAAAATGGATTTTAGGCTGTGCTCTCCTTCTTAAGCTTTGAAA
JMFF007J03+                           AGAAAATGGATTTTAGGCTGTGCTCTCCTTCTTAAGCTTTGAAA
rJMFF007J03-          GAACATCAATATTATAAGAAAATGGATTTTAGGCTGTGCTCTCCTTCTTAAGCTTTGAAA
                      ____________________________________________________________
consensus             GAACATCAATATTATAAGAAAATGGATTTTAGGCTGTGCTCTCCTTCTTAAGCTTTGAAA
 
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rJMFF032C07-          GCTCCTGTCTCACAATTCCAGCCTTCTTGATTTTTGCCAACATGATCTTGAACCTGTCAA
JMFF032C07+           GCTCCTGTCTCACAATTCCAGCCTTCTTGATTTTTGCCAACATGATCTTGAACCTGTCAA
JMFF007J03+           GCTCCTGTCTCACAATTCCAGCCTTCTTGATTTTTGCCAACATGATCTTGAACCTGTCAA
rJMFF007J03-          GCTCCTGTCTCACAATTCCAGCCTTCTTGATTTTTGCCAACATGATCTTGAACCTGTCAA
                      ____________________________________________________________
consensus             GCTCCTGTCTCACAATTCCAGCCTTCTTGATTTTTGCCAACATGATCTTGAACCTGTCAA
 
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rJMFF032C07-          AATCATTTAGAGCAGCCCTCCTCTTCTGCACAATCAACTTCCTGCCCCAGGAGCTGTTCT
JMFF032C07+           AATCATTTAGAGCAGCCCTCCTCTTCTGCACAATCAACTTCCTGCCCCAGGAGCTGTTCT
JMFF007J03+           AATCATTTAGAGCAGCCCTCCTCTTCTGCACAATCAACTTCCTGCCCCAGGAGCTGTTCT
rJMFF007J03-          AATCATTTAGAGCAGCCCTCCTCTTCTGCACAATCAACTTCCTGCCCCAGGAGCTGTTCT
                      ____________________________________________________________
consensus             AATCATTTAGAGCAGCCCTCCTCTTCTGCACAATCAACTTCCTGCCCCAGGAGCTGTTCT
 
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rJMFF032C07-          CCCACTTGTTCTTGACATCAGCAGCCTCCATGGCAGCAATCAAAGTCTTCTTCTTCGGGA
JMFF032C07+           CCCACTTGTTCTTGACATCAGCAGCCTCCATGGCAGCAATCAAAGTCTTCTTCTTCGGGA
JMFF007J03+           CCCACTTGTTCTTGACATCAGCAGCCTCCATGGCAGCAATCAAAGTCTTCTTCTTCGGGA
rJMFF007J03-          CCCACTTGTTCTTGACATCAGCAGCCTCCATGGCAGCAATCAAAGTCTTCTTCTTCGGGA
                      ____________________________________________________________
consensus             CCCACTTGTTCTTGACATCAGCAGCCTCCATGGCAGCAATCAAAGTCTTCTTCTTCGGGA
 
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rJMFF032C07-          CCCTTTTTATGTCAATTGTTATATCTGTGAGTGTAAGCCTTTTGAAGTTCATTTGGCTCC
JMFF032C07+           CCCTTTTTATGTCAATTGTTATATCTGTGAGTGTAAGCCTTTTGAAGTTCATTTGGCTCC
JMFF007J03+           CCCTTTTTATGTCAATTGTTATATCTGTGAGTGTAAGCCTTTTGAAGTTCATTTGGCTCC
rJMFF007J03-          CCCTTTTTATGTCAATTGTTATATCTGTGAGTGTAAGCCTTTTGAAGTTCATTTGGCTCC
                      ____________________________________________________________
consensus             CCCTTTTTATGTCAATTGTTATATCTGTGAGTGTAAGCCTTTTGAAGTTCATTTGGCTCC
 
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rJMFF032C07-          GTACCATGTCAGGGGCATCAACAAGTGCCCTGTTCTGATCAATAACATCGACGATGACGA
JMFF032C07+           GTACCATGTCAGGGGCATCAACAAGTGCCCTGTTCTGATCAATAACATCGACGATGACGA
JMFF007J03+           GTACCATGTCAGGGGCATCAACAAGTGCCCTGTTCTGATCAATAACATCGACGATGACGA
rJMFF007J03-          GTACCATGTCAGGGGCATCAACAAGTGCCCTGTTCTGATCAATAACATCGACGATGACGA
                      ____________________________________________________________
consensus             GTACCATGTCAGGGGCATCAACAAGTGCCCTGTTCTGATCAATAACATCGACGATGACGA
 
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rJMFF032C07-          CGAGCTTTCCATAGTCCTTTCCGTAGTTGACGAGAGCGACCCTTCCAATTTCAACGTACC
JMFF032C07+           CGAGCTTTCCATAGTCCTTTCCGTAGTTGACGAGAGCGACCCTTCCAATTTCAACGTACC
JMFF007J03+           CGAGCTTTCCATAGTCCTTTCCGTAGTTGACGAGAGCGACCCTTCCAATTTCAACGTACC
rJMFF007J03-          CGAGCTTTCCATAGTCCTTTCCGTAGTTGACGAGAGCGACCCTTCCAATTTCAACGTACC
                      ____________________________________________________________
consensus             CGAGCTTTCCATAGTCCTTTCCGTAGTTGACGAGAGCGACCCTTCCAATTTCAACGTACC
 
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rJMFF032C07-          TCTTGAACGGCATTTTCGTCTACTGGAATGAGCAGGAGCGCCGGTTTATGCGGAGGCGCA
JMFF032C07+           TCTTGAACGGCATTTTCGTCTACTGGAATGAGCAGGAGCGCCGGTTTATGCGGAGGCGCA
JMFF007J03+           TCTTGAACGGCATTTTCGTCTACTGGAATGAGCAGGAGCGCCGGTTTATGCGGAGGCGCA
rJMFF007J03-          TCTTGAACGGCATTTTCGTCTACTGGAATGAGCAGGAGCGCCGGTTTATGCGGAGGCGCA
                      ____________________________________________________________
consensus             TCTTGAACGGCATTTTCGTCTACTGGAATGAGCAGGAGCGCCGGTTTATGCGGAGGCGCA
 
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rJMFF032C07-          AAGCGAGCTATTCCCGGTGGAAAATGCGGAG                             
JMFF032C07+           GAGCGAGCTATTCCCGGTGGAAAATGCGGAGATTTAGGGTTTGGATGGGAGGGTAGCGCT
JMFF007J03+           GAGCGAGCTATTCCCGGTGGAAAATGCGGAGATTTAGGGTTTGGATGGGAGGGTAGCGCT
rJMFF007J03-          GAGCGAGCTATTCCCGGTGGAAAATGCGGAGATTTAGGGTTTGGATGGGAGGGTAGCGCT
                      ____________________________________________________________
consensus             GAGCGAGCTATTCCCGGTGGAAAATGCGGAGATTTAGGGTTTGGATGGGAGGGTAGCGCT