Contig 001040:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007E01Sequence501006576 (4)ref|XP_011071124.1|3e-84PREDICTED: high affinity nitrate transporter 2.5 [Sesamum indicum] ref|XP_011071430001040 (2)ref|XP_006367151.1|9e-32PREDICTED: high affinity nitrate transporter 2.5-like [Solanum tuberosum]
JMFF027B09Sequence577006576 (4)ref|XP_011071124.1|1e-85PREDICTED: high affinity nitrate transporter 2.5 [Sesamum indicum] ref|XP_011071754001040 (2)ref|XP_006367151.1|7e-58PREDICTED: high affinity nitrate transporter 2.5-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMFF027B09+                                    CGNCCAGGAGGAGGCATGTTATCGGATATTGTGG
                      ____________________________________________________________
consensus                                       CGNCCAGGAGGAGGCATGTTATCGGATATTGTGG
 
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rJMFF027B09+          CGAAGAGGTACGGAATGAGGGGAAGGCTGCGGGCATTATGGGTTGTGCAGACCATAGGAG
                      ____________________________________________________________
consensus             CGAAGAGGTACGGAATGAGGGGAAGGCTGCGGGCATTATGGGTTGTGCAGACCATAGGAG
 
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rJMFF027B09+          GGCTTCTTTGTGTTTTACTAGGAAGAGTTGGATCCTTGAGTGCTTCTGTTGCTGTCATGG
                      ____________________________________________________________
consensus             GGCTTCTTTGTGTTTTACTAGGAAGAGTTGGATCCTTGAGTGCTTCTGTTGCTGTCATGG
 
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rJMFF027B09+          TTGTTTTCTCTGTGTTCGTTCAAGCTGCCTGTGGCCTCACCTTTGGAGTTGTCCCATTTG
                      ____________________________________________________________
consensus             TTGTTTTCTCTGTGTTCGTTCAAGCTGCCTGTGGCCTCACCTTTGGAGTTGTCCCATTTG
 
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rJMFF027B09+          TTTCAAGAAGGTCATTGGGGATATCTGGGATGGCAGGAGGGGGAGGAAATGTTGGAGCAG
                      ____________________________________________________________
consensus             TTTCAAGAAGGTCATTGGGGATATCTGGGATGGCAGGAGGGGGAGGAAATGTTGGAGCAG
 
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rJMFF027B09+          TCATAACACAAGTGATTTTCTTCAGAGGATCAAGATACAAGACCGAGACAGGGATAATGT
rJMFF007E01+                                                            GGGATAATGT
                      ____________________________________________________________
consensus             TCATAACACAAGTGATTTTCTTCAGAGGATCAAGATACAAGACCGAGACAGGGATAATGT
 
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rJMFF027B09+          TAATGGGAATCATGATCATCTGTTGCACGCTCCCAATTTTGTTCATCTACTTTCCTCAGT
rJMFF007E01+          TAATGGGAATCATGATCATCTGTTGCACGCTCCCAATTTTGTTCATCTACTTTCCTCAGT
                      ____________________________________________________________
consensus             TAATGGGAATCATGATCATCTGTTGCACGCTCCCAATTTTGTTCATCTACTTTCCTCAGT
 
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rJMFF027B09+          GGGGAGGGATGTTTTATGGTCCCTCCAAAGGCACGACGGAGGAAGACTATTACGGGGCGG
rJMFF007E01+          GGGGAGGGATGTTTTATGGTCCCTCCAAAGGCACGACGGAGGAAGACTATTACGGGGCGG
                      ____________________________________________________________
consensus             GGGGAGGGATGTTTTATGGTCCCTCCAAAGGCACGACGGAGGAAGACTATTACGGGGCGG
 
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rJMFF027B09+          AGTGGAGTGAGGCGGAGAAGGAGAAAGGGTTTCACCACCCAAGCATCAAATTTGCTAATA
rJMFF007E01+          AGTGGAGTGAGGCGGAGAAGGAGAAAGGGTTTCACCACCCAAGCATCAAATTTGCTAATA
                      ____________________________________________________________
consensus             AGTGGAGTGAGGCGGAGAAGGAGAAAGGGTTTCACCACCCAAGCATCAAATTTGCTAATA
 
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rJMFF027B09+          ATAGCATAAGTGAAAGAGGAAGAAGAGTGGCATCTGCTCCCACACCCGTACATGGAACTC
rJMFF007E01+          ATAGCATAAGTGAAAGAGGAAGAAGAGTGGCATCTGCTCCCACACCCGTACATGGAACTC
                      ____________________________________________________________
consensus             ATAGCATAAGTGAAAGAGGAAGAAGAGTGGCATCTGCTCCCACACCCGTACATGGAACTC
 
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rJMFF027B09+          CTCCATCTGATGTAGTCTATGTGTGAGCTTAGCTTTGTTTTATTATCACTCAGCTTTAGG
rJMFF007E01+          CTCCATCTGATGTAGTCTATGTGTGAGCTTAGCTTTGTTTTATTATCACTCAGCTTTAGG
                      ____________________________________________________________
consensus             CTCCATCTGATGTAGTCTATGTGTGAGCTTAGCTTTGTTTTATTATCACTCAGCTTTAGG
 
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rJMFF027B09+          ATTCCTACTCCATCTTTATATATTGTTATTGTAAAATCTACTTTTATCAATCTTGCTTAG
rJMFF007E01+          ATTCCTACTCCATCTTTATATATTGTTATTGTAAAATCTACTTTTATCAATCTTGCTTAG
                      ____________________________________________________________
consensus             ATTCCTACTCCATCTTTATATATTGTTATTGTAAAATCTACTTTTATCAATCTTGCTTAG
 
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rJMFF027B09+          CTATGACTATCTCTTGTATTCCTATAAATACGTTCCTTTT                    
rJMFF007E01+          CTATGACTATCTCTNGTATTCCTATAAATACGTTCCTTTTGTACTCTGTAAACAAAATGA
                      ____________________________________________________________
consensus             CTATGACTATCTCTTGTATTCCTATAAATACGTTCCTTTTGTACTCTGTAAACAAAATGA