Contig 001035:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005P17Sequence438012836 (6)ref|XP_009797474.1|2e-51PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like [Nicotiana sylvest740001035 (4)gb|AGQ56866.1|3e-96omega-3 fatty acid desaturase [Camellia sinensis]
JMFF008G24Sequence459012836 (6)gb|AIA22325.1|4e-16fatty acid desaturase 7 [Nicotiana tabacum]735001035 (4)emb|CDP14009.1|5e-97unnamed protein product [Coffea canephora]
JMSF002C09Sequence274012836 (6)758001035 (4)ref|XP_004506769.1|2e-108PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like [Cicer arietinum]
JMSF034I21Sequence667012836 (6)ref|XP_009797474.1|3e-90PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like [Nicotiana sylvest641001035 (4)gb|AGQ56866.1|3e-89omega-3 fatty acid desaturase [Camellia sinensis]

Alignment

This contig is upended


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rJMSF002C09+                                                           TNGTTTGTGCC
                      ____________________________________________________________
consensus                                                              TNGTTTGTGCC
 
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rJMSF002C09+          AAATGAGAAGAAAGACGTGATTACCTCAACTGTGTGTTGGTCAGCCATGGTTGCTATTCT
rJMFF008G24+                                                  TCAGCCATGGTTGCTATTCT
rJMFF005P17+                                                  TCAGCCATGGTTGCTATTCT
                      ____________________________________________________________
consensus             AAATGAGAAGAAAGACGTGATTACCTCAACTGTGTGTTGGTCAGCCATGGTTGCTATTCT
 
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rJMSF002C09+          TGCTGGTTTATCGTTCGTGATGGGGCCTGTCCAATTGCTCAAACTCTATGGAGTTCCATA
rJMFF008G24+          TGCTGGTTTATCGTTCGTGATGGGGCCTGTCCAATTGCTCAAACTCTATGGAGTTCCATA
rJMSF034I21+                            GATGGGGCCTGTCCAATTGCTCAAACTCTATGGAGTTCCATA
rJMFF005P17+          TGCTGGTTTATCGTTCGTGATGGGGCCTGTCCAATTGCTCAAACTCTATGGAGTTCCATA
                      ____________________________________________________________
consensus             TGCTGGTTTATCGTTCGTGATGGGGCCTGTCCAATTGCTCAAACTCTATGGAGTTCCATA
 
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rJMSF002C09+          TGCGATCTTTGTTATGTGGCTGGATTTAGTCACCTACTTACATCATCATGGACATGAAGA
rJMFF008G24+          TGCGATCTTTGTTATGTGGCTGGATTTAGTCACCTACTTACATCATCATGGACATGAAGA
rJMSF034I21+          TGCGATCTTTGTTATGTGGCTGGATTTAGTCACCTACTTACATCATCATGGACATGAAGA
rJMFF005P17+          TGCGATCTTTGTTATGTGGCTGGATTTAGTCACCTACTTACATCATCATGGACATGAAGA
                      ____________________________________________________________
consensus             TGCGATCTTTGTTATGTGGCTGGATTTAGTCACCTACTTACATCATCATGGACATGAAGA
 
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rJMSF002C09+          CAAACTCCCATGGTATCGTGGAAAGGAATGGAGTTACCTTAGGGGTGGACTGACCACTCT
rJMFF008G24+          CAAACTCCCATGGTATCGTGGAAAGGAATGGAGTTACCTTAGGGGTGGACTGACCACTCT
rJMSF034I21+          CAAACTCCCATGGTATCGTGGAAAGGAATGGAGTTACCTTAGGGGTGGACTGACCACTCT
rJMFF005P17+          CAAACTCCCATGGTATCGTGGAAAGGAATGGAGTTACCTTAGGGGTGGACTGACCACTCT
                      ____________________________________________________________
consensus             CAAACTCCCATGGTATCGTGGAAAGGAATGGAGTTACCTTAGGGGTGGACTGACCACTCT
 
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rJMSF002C09+          TGATCGCGATTATGGATGGATAAACAACATACACCACGATATTGGGACCCATGTCATACA
rJMFF008G24+          TGATCGCGATTATGGATGGATAAACAACATACACCACGATATTGGGACCCATGTCATACA
rJMSF034I21+          TGATCGCGATTATGGATGGATAAACAACATACACCACGATATTGGGACCCATGTCATACA
rJMFF005P17+          TGATCGCGATTATGGATGGATAAACAACATACACCACGATATTGGGACCCATGTCATACA
                      ____________________________________________________________
consensus             TGATCGCGATTATGGATGGATAAACAACATACACCACGATATTGGGACCCATGTCATACA
 
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rJMSF002C09+          TCATCTTTTCCCGCAAATCCCTCATTATCACTTGATTGAAGCTACCGAGGCTGCTAAACC
rJMFF008G24+          TCATCTTTTCCCGCAAATCCCTCATTATCACTTGATTGAAGCTACCGAGGCTGCTAAACC
rJMSF034I21+          TCATCTTTTCCCGCAAATCCCTCATTATCACTTGATTGAAGCTACCGAGGCTGCTAAACC
rJMFF005P17+          TCATCTTTTCCCGCAAATCCCTCATTATCACTTGATTGAAGCTACCGAGGCTGCTAAACC
                      ____________________________________________________________
consensus             TCATCTTTTCCCGCAAATCCCTCATTATCACTTGATTGAAGCTACCGAGGCTGCTAAACC
 
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rJMSF002C09+          GGTGCTAGGGAAGTATTACAGAGAGCCGAAGAAATCATGGCCTCTTCCACTCCACCTGTT
rJMFF008G24+          GGTGCTAGGGAAGTATTACAGAGAGCCGAAGAAATCATGGCCTCTTCCACTCCACCTGTT
rJMSF034I21+          GGTGCTAGGGAAGTATTACAGAGAGCCGAAGAAATCATGGCCTCTTCCACTCCACCTGTT
rJMFF005P17+          GGTGCTAGGGAAGTATTACAGAGAGCCGAAGAAATCATGGCCTCTTCCACTCCACCTGTT
                      ____________________________________________________________
consensus             GGTGCTAGGGAAGTATTACAGAGAGCCGAAGAAATCATGGCCTCTTCCACTCCACCTGTT
 
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rJMSF002C09+          GGGAGACCTCGTGAGAAGCATGAAGAAGGATCACTACGTGAGTGATACCGGGGATGTTGT
rJMFF008G24+          GGGAGACCTCGTGAGAAGCATGAAGAAGGATCACTACGTGAGTGATACCGGGGATGTTGT
rJMSF034I21+          GGGAGACCTCGTGAGAAGCATGAAGAAGGATCACTACGTGAGTGATACCGGGGATGTTGT
rJMFF005P17+          GGGAGACCTCGTGAGAAGCATGAAGAAGGATCACTACGTGAGTGATACCGGGGATGTTGT
                      ____________________________________________________________
consensus             GGGAGACCTCGTGAGAAGCATGAAGAAGGATCACTACGTGAGTGATACCGGGGATGTTGT
 
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rJMSF002C09+          ATATTACCAAACCGACCCCAAGCTTGCTGGAACCGAGAAGTGAGACTGTCGATCTCTGAG
rJMFF008G24+          ATATTACCAAACCGACCCCAAGCTTGCTGGAACCGAGAAGTGAGACTGTCGATCTCTGAG
rJMSF034I21+          ATATTACCAAACCGACCCCAAGCTTGCTGGAACCGAGAAGTGAGACTGTCGATCTCTGAG
rJMFF005P17+          ATATTACCAAACCGACCCCAAGCTTGCTGGAACCGAGAAGTGAGACTGTCGATCTCTGAG
                      ____________________________________________________________
consensus             ATATTACCAAACCGACCCCAAGCTTGCTGGAACCGAGAAGTGAGACTGTCGATCTCTGAG
 
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rJMSF002C09+          GTTTCTCCTAGTTTAGTAATGCTCGTTGTGTCTTGGCAGATGGTTCGTTTGACTTAACTC
rJMFF008G24+          GTTTCTCCTAGTTTAGTAATGCTCGTTGGGTCTTGGCAGATGGTTCGTTTGACTTAACTC
rJMSF034I21+          GTTTCTCCTAGTTTAGTAATGCTCGTTGGGTCTTGGCAGATGGTTCGTTTGACTTAACTC
rJMFF005P17+          GTTTCTCCTAGTTTAGTAATGCTCGTTGGGTCTTGGCAGATGGTTCGTTTGACTTAACTC
                      ____________________________________________________________
consensus             GTTTCTCCTAGTTTAGTAATGCTCGTTGGGTCTTGGCAGATGGTTCGTTTGACTTAACTC
 
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rJMSF002C09+          AATTCTCGGTGTTTTTGTGCTTGTACTACTATTTTTGGAGGCATTAGCGGCCAAGTCCAT
rJMFF008G24+          AATTCTCGGTGTTTTTGTGCTTGTACTACTATTTTTGGAGGCATTAGCGGCCAAGTCCAT
rJMSF034I21+          AATTCTCGGTGTTTTTGTGCTTGTACTACTATTTTTGGAGGCATTAGCGGCCAAGTCCAT
rJMFF005P17+          AATTCTCGGTGTTTTTGTGCTTGTACTACTATTTTTGGAGGCATTAGCGGCCAAGTCCAT
                      ____________________________________________________________
consensus             AATTCTCGGTGTTTTTGTGCTTGTACTACTATTTTTGGAGGCATTAGCGGCCAAGTCCAT
 
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rJMSF002C09+          TCATTCTTACCTTATATGATATAGCTCTCTGATCATAAAGTTCAAGAAATGTATTGTGTT
rJMFF008G24+          TCATTCTTACCTTATATGATATAGCTCTCTGATCATAAAGTTCAAGAAATGTATTGTGTT
rJMSF034I21+          TCATTCTTACCTTATATGATATAGCTCTCTGATCATAAAGTTCAAGAAA           
rJMFF005P17+          TCATTCTTACCTTATATGATATAGCTCTCTGATCATAAAGTTCAAGAAATGTATTGTGTT
                      ____________________________________________________________
consensus             TCATTCTTACCTTATATGATATAGCTCTCTGATCATAAAGTTCAAGAAATGTATTGTGTT
 
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rJMSF002C09+          ATCATTC                                                     
rJMFF008G24+          ATCATTCATGGCAGATATATAATGTATGTAATGATCATTCAGTTCAACAAAA        
rJMFF005P17+          ATCATTCATGGCAGATATATAATGTATGTAATGATCATTCAGTTCAACAAAATGATAAGC
                      ____________________________________________________________
consensus             ATCATTCATGGCAGATATATAATGTATGTAATGATCATTCAGTTCAACAAAATGATAAGC