| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP015E04 | Sequence | 550 | 001023 (5) | emb|CDP02247.1| | 4e-08 | unnamed protein product [Coffea canephora] | |||||
| JMFF003A21 | Sequence | 764 | 001023 (5) | emb|CDP02247.1| | 3e-18 | unnamed protein product [Coffea canephora] | |||||
| JMSF009A11 | Sequence | 177 | 006410 (5) | 753 | 001023 (5) | emb|CDP02247.1| | 2e-17 | unnamed protein product [Coffea canephora] | |||
| JMSF019B08 | Sequence | 412 | 006410 (5) | ref|XP_011098647.1| | 3e-36 | PREDICTED: KH domain-containing protein At4g18375 [Sesamum indicum] ref|XP_01109 | 782 | 001023 (5) | emb|CDP02247.1| | 4e-25 | unnamed protein product [Coffea canephora] |
| JMSF047D24 | Sequence | 695 | 006410 (5) | ref|XP_011098647.1| | 8e-76 | PREDICTED: KH domain-containing protein At4g18375 [Sesamum indicum] ref|XP_01109 | 702 | 001023 (5) | emb|CDP02247.1| | 4e-07 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF019B08+ CAGCTGAAGATGATGAGATGGTGCAGANTT
____________________________________________________________
consensus CAGCTGAAGATGATGAGATGGTGCAGANTT
. : . : . : . : . : . :
rJMSF019B08+ CTGGAGAGCTTGATGTTTCAAAGGATGCACTTGTTCAAGTAACTTCACGATTGAGGGCAA
rJMSF009A11+ CAAGTAACTTCACGATTGAGGGCAA
rJMFF003A21+ AAAGGATGCACTTGTTCAAGTAACTTCACGATTGAGGGCAA
____________________________________________________________
consensus CTGGAGAGCTTGATGTTTCAAAGGATGCACTTGTTCAAGTAACTTCACGATTGAGGGCAA
. : . : . : . : . : . :
rJMSF019B08+ ATCTTTTTGAAAGGGAGGGTGCTGTATCTGCTTTTGTGCTTGTTTCTCCATATCTTCCAA
rJMSF009A11+ ATCTTTTTGAAAGGGAGGGTGCTGTATCTGCTTTTGTGCCTGTTCCTCCATATCTTCCAA
rJMSF047D24+ AAGGGAGGGTGCTGTATCTGCTTTTGTGCCTGTTCCTCCATATCTTCCAA
rJMCP015E04- TGAAAGGGAGGGTGCTGTATCTGCTTTTGTGCCTGTTCCTCCATATCTTCCAA
rJMFF003A21+ ATCTTTTTGAAAGGGAGGGTGCTGTATCTGCTTTTGTGCCTGTTCCTCCATATCTTCCAA
____________________________________________________________
consensus ATCTTTTTGAAAGGGAGGGTGCTGTATCTGCTTTTGTGCCTGTTCCTCCATATCTTCCAA
. : . : . : . : . : . :
rJMSF019B08+ TGCCAATAGATGCTTCTGATAGCCTAACAAAGTATGAAAGCAGAGATACTAGAAGGCATG
rJMSF009A11+ TGCCAATAGATGCTTCTGATAGCCTAACAAAGTATGAAAGCAGAGATACTAGAAGGCATG
rJMSF047D24+ TGCCAATAGATGCTTCTGATAGCCTAACAAAGTATGAAAGCAGAGATACTAGAAGGCATG
rJMCP015E04- TGCCAATAGATGCTTCTGATAGCCTAACAAAGTATGAAAGCAGAGATACTAGAAGGCATG
rJMFF003A21+ TGCCAATAGATGCTTCTGATAGCCTAACAAAGTATGAAAGCAGAGATACTAGAAGGCATG
____________________________________________________________
consensus TGCCAATAGATGCTTCTGATAGCCTAACAAAGTATGAAAGCAGAGATACTAGAAGGCATG
. : . : . : . : . : . :
rJMSF019B08+ GACGAGGACATTCTTATTCTTCTGGTTATGGTGGCCTTAATGATATACCTCCAACTGATG
rJMSF009A11+ GACGAGGACATTCTTATTCTTCTGGTTATGGTGGCCTTAATGATATACCTCCAACTGATG
rJMSF047D24+ GACGAGGACATTCTTATTCTTCTGGTTATGGTGGCCTTAATGATATACCTCCAACTGATG
rJMCP015E04- GACGAGGACATTCTTATTCTTCTGGTTATGGTGGCCTTAATGATATACCTCCAACTGATG
rJMFF003A21+ GACGAGGACATTCTTATTCTTCTGGTTATGGTGGCCTTAATGATATACCTCCAACTGATG
____________________________________________________________
consensus GACGAGGACATTCTTATTCTTCTGGTTATGGTGGCCTTAATGATATACCTCCAACTGATG
. : . : . : . : . : . :
rJMSF019B08+ GTTATGGAGGCTATGGTGGTCTTCAGAGTAGCAGCAGCAGCCTTGGATATGGAGCATATG
rJMSF009A11+ GTTATGGAGGCTATGGTGGTCTTCAGAGTAGCAGCAGCAGCCTTGGATATGGAGCATATG
rJMSF047D24+ GTTATGGAGGCTATGGTGGTCTTCAGAGTAGCAGCAGCAGCCTTGGATATGGAGCATATG
rJMCP015E04- GTTATGGAGGCTATGGTGGTCTTCAGAGTAGCAGCAGCAGCCTTGGATATGGAGCATATG
rJMFF003A21+ GTTATGGAGGCTATGGTGGTCTTCAGAGTAGCAGCAGCAGCCTTGGATATGGAGCATATG
____________________________________________________________
consensus GTTATGGAGGCTATGGTGGTCTTCAGAGTAGCAGCAGCAGCCTTGGATATGGAGCATATG
. : . : . : . : . : . :
rJMSF019B08+ AAGGCTATTCTATTGGCCGTTCTGGATTGTCTGGGTCAAATCCTGCATCACGGAGAAAAA
rJMSF009A11+ AAGGCTATTCTATTGGCCGTTCTGGATTGTCTGGGTCAAATCCTGCATCACGGAGAAAAA
rJMSF047D24+ AAGGCTATTCTATTGGCCGTTCTGGATTGTCTGGGTCAAATCCTGCATCACGGAGAAAAA
rJMCP015E04- AAGGCTATTCTATTGGCCGTTCTGGATTGTCTGGGTCAAATCCTGCATCACGGAGAAAAA
rJMFF003A21+ AAGGCTATTCTATTGGCCGTTCTGGATTGTCTGGGTCAAATCCTGCATCACGGAGAAAAA
____________________________________________________________
consensus AAGGCTATTCTATTGGCCGTTCTGGATTGTCTGGGTCAAATCCTGCATCACGGAGAAAAA
. : . : . : . : . : . :
rJMSF019B08+ GTTATGGTTACTAAAGTTTTCTGACTGGAACTGCAGCTGAGATACCTGAAGCTTGAAGCC
rJMSF009A11+ GTTATGGTTACTAAAGTTTTCTGACTGGAACTGCAGCTGAGATACCTGAAGCTTGAAGCC
rJMSF047D24+ GTTATGGTTACTAAAGTTTTCTGACTGGAACTGCAGCTGAGATACCTGAAGCTTGAAGCC
rJMCP015E04- GTTATGGTTACTAAAGTTTTCTGACTGGAACTGCAGCTGAGATACCTGAAGCTTGAAGCC
rJMFF003A21+ GTTATGGTTACTAAAGTTTTCTGACTGGAACTGCAGCTGAGATACCTGAAGCTTGAAGCC
____________________________________________________________
consensus GTTATGGTTACTAAAGTTTTCTGACTGGAACTGCAGCTGAGATACCTGAAGCTTGAAGCC
. : . : . : . : . : . :
rJMSF019B08+ AGCCTACTGCCTTGTCCGATGAAGCCTCCTATCTAAACCAGAAGACCAGATGAATGAGGG
rJMSF009A11+ AGCCTACTGCCTTGTCCGATGAAGCCTCCTATCTAAACCAGAAGACCAGATGAATGAGGG
rJMSF047D24+ AGCCTACTGCCTTGTCCGATGAAGCCTCCTATCTAAACCAGAAGACCAGATGAATGAGGG
rJMCP015E04- AGCCTACTGCCTTGTCCGATGAAGCCTCCTATCTAAACCAGAAGACCAGATGAATGAGGG
rJMFF003A21+ AGCCTACTGCCTTGTCCGATGAAGCCTCCTATCTAAACCAGAAGACCAGATGAATGAGGG
____________________________________________________________
consensus AGCCTACTGCCTTGTCCGATGAAGCCTCCTATCTAAACCAGAAGACCAGATGAATGAGGG
. : . : . : . : . : . :
rJMSF019B08+ GAAAACTCATGGCCCCACCTTGATGCTTTTGTTTAGGAGGACCAATATCTGAAGATCTTA
rJMSF009A11+ GAAAACTCATGGCCCCACCTTGATGCTTTTGTTTAGGAGGACCAATATCTGAAGATCTTA
rJMSF047D24+ GAAAACTCATGGCCCCACCTTGATGCTTTTGTTTAGGAGGACCAATATCTGAAGATCTTA
rJMCP015E04- GAAAACTCATGGCCCCACCTTGATGCTTTTGTTatccAcGACCAATATCTGAAGATCTTA
rJMFF003A21+ GAAAACTCATGGCCCCACCTTGATGCTTTTGTTTAGGAGGACCAATATCTGAAGATCTTA
____________________________________________________________
consensus GAAAACTCATGGCCCCACCTTGATGCTTTTGTTTAGGAGGACCAATATCTGAAGATCTTA
. : . : . : . : . : . :
rJMSF019B08+ CCTTCTATTAAATGCCATGTCCTGACACTATATGTCCAAGCTTTAGATTCTTGTGCTCCC
rJMSF009A11+ CCTTCTATTAAATGCCATGTCCTGACACTATATGTCCAAGCTTTAGATTCTTGTGCTCCC
rJMSF047D24+ CCTTCTATTAAATGCCATGTCCTGACACTATATGTCCAAGCTTTAGATTCTTGTGCTCCC
rJMCP015E04- CCTTCTATTAAtacggtaGTCCTGACACTATATGaggttcgTTTtctaagaaGTGCTCCC
rJMFF003A21+ CCTTCTATTAAATGCCATGTCCTGACACTATATGTCCAAGCTTTAGATTCTTGTGCTCCC
____________________________________________________________
consensus CCTTCTATTAAATGCCATGTCCTGACACTATATGTCCAAGCTTTAGATTCTTGTGCTCCC
. : . : . : . : . : . :
rJMSF019B08+ ATGAACCTGTGTACCTAGCAAGCCTATGTCCATTCTTACCTTATTTGGTGATTGTATTAG
rJMSF009A11+ ATGAACCTGTGTACCTAGCAAGCCTATGTCCATTCTTACCTTATTTGGTGATTGTATTAG
rJMSF047D24+ ATGAACCTGTGTACCTAGCAAGCCTATGTCCATTCTTACCTTATTTGGTGATTGTATTAG
rJMCP015E04- ATGtACCTGTGTACCTA
rJMFF003A21+ ATGAACCTGTGTACCTAGCAAGCCTATGTCCATTCTTACCTTATTTGGTGATTGTATTAG
____________________________________________________________
consensus ATGAACCTGTGTACCTAGCAAGCCTATGTCCATTCTTACCTTATTTGGTGATTGTATTAG
. : . : . : . : . : . :
rJMSF019B08+ ACACGTTCATCATCGAGTTCTTAGCTACTTTCCTTATGTTTCATGATCAGTCTGTTTGTA
rJMSF009A11+ ACACGTTCATCATCGAGTTCTTAGCTACTTTCCTTATGTTTCATGATCAGTCTGTTTGTA
rJMSF047D24+ ACACGTTCATCATCGAGTTCTTAGCTACTTTCCTTATGTTTCATGATCAGTCTGTTTGTA
rJMFF003A21+ ACACGTTCATCATCGAGTTCTTAGCTACTTTCCTTATGTTTCATGATCAGTCTGTTTGTA
____________________________________________________________
consensus ACACGTTCATCATCGAGTTCTTAGCTACTTTCCTTATGTTTCATGATCAGTCTGTTTGTA
. : . : . : . : . : . :
rJMSF019B08+ AGGATTTACCATTAGTTGGATGTGGTGTTGAC
rJMSF009A11+ AGGATTTACCATTAGTTGGATGTGGTGTTGACTAATTCTATTT
rJMSF047D24+ AGGATTTACCATTAGTTGGATGTGGTGTTGACTAATTCTATTT
rJMFF003A21+ AGGATTTACCATTAGTTGGATGTGGTGTTGACTAATTCTATTTTAAACAAAATTAATGAC
____________________________________________________________
consensus AGGATTTACCATTAGTTGGATGTGGTGTTGACTAATTCTATTTTAAACAAAATTAATGAC