Contig 001015:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS025H06Sequence646001015 (3)ref|XP_009608471.1|3e-100PREDICTED: uncharacterized protein C630.12 [Nicotiana tomentosiformis]
JMSF017K15Sequence487001015 (3)ref|XP_009608471.1|7e-59PREDICTED: uncharacterized protein C630.12 [Nicotiana tomentosiformis]789002821 (2)ref|XP_002262863.1|4e-69PREDICTED: uncharacterized protein C630.12 isoform X4 [Vitis vinifera] ref|XP_0
JMSF053K01Sequence624001015 (3)ref|XP_009608471.1|2e-90PREDICTED: uncharacterized protein C630.12 [Nicotiana tomentosiformis]950002821 (2)ref|XP_002262863.1|7e-78PREDICTED: uncharacterized protein C630.12 isoform X4 [Vitis vinifera] ref|XP_0

Alignment

This contig is upended


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JMFS025H06+                                                               GGTAGTTC
                      ____________________________________________________________
consensus                                                                 GGTAGTTC
 
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JMFS025H06+           CTCACACCAAATACTTTCTCATAACGGCTGATAACCTCTGGCATTTGGGGGTGGAAAGCT
JMSF053K01+                                               TCTGGCATTTGGGGGTGGAAAGCT
                      ____________________________________________________________
consensus             CTCACACCAAATACTTTCTCATAACGGCTGATAACCTCTGGCATTTGGGGGTGGAAAGCT
 
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JMFS025H06+           GAGTAGCCAATATCATGGTTTCCTGAGAGGTAGAACAGTTTTATATTTTTAGTTTGCTGA
JMSF053K01+           GAGTAGCCAATATCATGGTTTCCTGAGAGGTAGAACAGTTTTATATTTTTAGTTTGCTGA
                      ____________________________________________________________
consensus             GAGTAGCCAATATCATGGTTTCCTGAGAGGTAGAACAGTTTTATATTTTTAGTTTGCTGA
 
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JMFS025H06+           ACCATATCCAGGTTAAAAATATGCTTGAATCGGCTCCAGGATTCCTGCCATTCTTCATCA
JMSF017K15+                                                               CTTCATCA
JMSF053K01+           ACCATATCCAGGTTAAAAATATGCTTGAATCGGCTCCAGGATTCCTGCCATTCTTCATCA
                      ____________________________________________________________
consensus             ACCATATCCAGGTTAAAAATATGCTTGAATCGGCTCCAGGATTCCTGCCATTCTTCATCA
 
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JMFS025H06+           GACAGGAAAGGTCCACCATCAAAATAATCACCCAGGAACAAAATGATGTCTGGTCTGAAG
JMSF017K15+           GACAGGAAAGGTCCACCATCAAAATAATCACCCAGGAACAAAATGATGTCTGGTCTGAAG
JMSF053K01+           GACAGGAAAGGTCCACCATCAAAATAATCACCCAGGAACAAAATGATGTCTGGTCTGAAG
                      ____________________________________________________________
consensus             GACAGGAAAGGTCCACCATCAAAATAATCACCCAGGAACAAAATGATGTCTGGTCTGAAG
 
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JMFS025H06+           GGTAAAACAGATGATAGGAATGCCCTGCGCATAAACAAATCTGTGTAGAATTGAGCCATC
JMSF017K15+           GGTAAAACAGATGATAGGAATGCCCTGCGCATAAACAAATCTGTGTAGAATTGAGCCATC
JMSF053K01+           GGTAAAACAGATGATAGGAATGCCCTGCGCATAAACAAATCTGTGTAGAATTGAGCCATC
                      ____________________________________________________________
consensus             GGTAAAACAGATGATAGGAATGCCCTGCGCATAAACAAATCTGTGTAGAATTGAGCCATC
 
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JMFS025H06+           TCTAGAGCCAGGGATTTTGGAGCAAGATTGAGGGAGGTTTTATCCATAAGCTGAGGATCG
JMSF017K15+           TCTAGAGCCAGGGATTTTGGAGCAAGATTGAGGGAGGTTTTATCCATAAGCTGAGGATCG
JMSF053K01+           TCTAGAGCCAGGGATTTTGGAGCAAGATTGAGGGAGGTTTTATCCATAAGCTGAGGATCG
                      ____________________________________________________________
consensus             TCTAGAGCCAGGGATTTTGGAGCAAGATTGAGGGAGGTTTTATCCATAAGCTGAGGATCG
 
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JMFS025H06+           GTAAGGACTGCAATTTTTACATAATCACCAGGATTATCTACTTTGTCCATAGATGAAGGA
JMSF017K15+           GTAAGGACTGCAATTTTTACATAATCACCAGGATTATCTACTTTGTCCATAGATGAAGGA
JMSF053K01+           GTAAGGACTGCAATTTTTACATAATCACCAGGATTATCTACTTTGTCCATAGATGAAGGA
                      ____________________________________________________________
consensus             GTAAGGACTGCAATTTTTACATAATCACCAGGATTATCTACTTTGTCCATAGATGAAGGA
 
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JMFS025H06+           GGAGGAGGCCAAGAGCACGTCCACAGAGAGGGAATCCAGAAAGCAAACATCTCGCCATAG
JMSF017K15+           GGAGGAGGCCAAGAGCACGTCCACAGAGAGGGAATCCAGAAAGCAAACATCTCGCCATAG
JMSF053K01+           GGAGGAGGCCAAGAGCACGTCCACAGAGAGGGAATCCAGAAAGCAAACATCTCGCCATAG
                      ____________________________________________________________
consensus             GGAGGAGGCCAAGAGCACGTCCACAGAGAGGGAATCCAGAAAGCAAACATCTCGCCATAG
 
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JMFS025H06+           AGAAGGCTGAGAGCCCACACTAAGGTTAGAAAAATGGTCAGCTTCCACATTGTAGTGTGC
JMSF017K15+           AGAAGGCTGAGAGCCCACACTAAGGTTAGAAAAATGGTCAGCTTCCACATTGTAGTGTGC
JMSF053K01+           AGAAGGCTGAGAGCCCACACTAAGGTTAGAAAAATGGTCAGCTTCCACATTGTAGTGTGC
                      ____________________________________________________________
consensus             AGAAGGCTGAGAGCCCACACTAAGGTTAGAAAAATGGTCAGCTTCCACATTGTAGTGTGC
 
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JMFS025H06+           CTCCAAGGTTATACCTTTTCAGGCCTCCATTTTCTCCCCCCTCGGAGCTCCGAGAAAAAC
JMSF017K15+           CTCCAAGGTTATACCTTTTCAGGCCTCCATTTTCTCCCCCCTCGGAGCTCCGAGAAAAAC
JMSF053K01+           CTCCAAGGTTATACCTTTTCAGGCCTCCATTTTCTCCCCCCTCGGAGCTCCGAGAAAAAC
                      ____________________________________________________________
consensus             CTCCAAGGTTATACCTTTTCAGGCCTCCATTTTCTCCCCCCTCGGAGCTCCGAGAAAAAC
 
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JMFS025H06+           AGTAGTAATTAGATTCCGGCTAAGGCTGACTTCTAGAG                      
JMSF017K15+           AGTAGTAATTAGATTCCGGCTAAGGCTGACTTCTAGAGCTTCGCAGGCGACTACTTCCC 
JMSF053K01+           AGTAGTAATTAGATTCCGGCTAAGGCTGACTTCTAGAGCTTCGCAGGCGACTACTTCCCA
                      ____________________________________________________________
consensus             AGTAGTAATTAGATTCCGGCTAAGGCTGACTTCTAGAGCTTCGCAGGCGACTACTTCCCA