Contig 001013:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF046N09Sequence776001013 (3)ref|XP_009789430.1|3e-116PREDICTED: nicotianamine synthase [Nicotiana sylvestris]169015161
JMSF052P19Sequence636001013 (3)emb|CDP18252.1|2e-84unnamed protein product [Coffea canephora]789001013 (3)ref|XP_009789430.1|8e-81PREDICTED: nicotianamine synthase [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF052P19-                                   CATTTCCATTCTTGAATTGATTGAGAGTAGCATAC
                      ____________________________________________________________
consensus                                      CATTTCCATTCTTGAATTGATTGAGAGTAGCATAC
 
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rJMSF052P19-          ACACATATAGAAAGGATAGGAACACAAATAGGGTAGGAGACAATGTATTGTATGAAACTA
                      ____________________________________________________________
consensus             ACACATATAGAAAGGATAGGAACACAAATAGGGTAGGAGACAATGTATTGTATGAAACTA
 
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rJMSF052P19-          AGACCATATAAGGCAAAACAGTTAGACATGCAGAGGAAACTAACAACAAAAACAACAACA
                      ____________________________________________________________
consensus             AGACCATATAAGGCAAAACAGTTAGACATGCAGAGGAAACTAACAACAAAAACAACAACA
 
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rJMSF052P19-          ACAACAAATTGATAATTGATTAACCAAATAATCAATGGAAATAGAGGGAGATTGATTAGG
                      ____________________________________________________________
consensus             ACAACAAATTGATAATTGATTAACCAAATAATCAATGGAAATAGAGGGAGATTGATTAGG
 
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rJMSF052P19-          CCCACTCCCCTTCTGATCTTGGATCAATTCAAGAAAGTTATTAGTCATTCTTGATCAAGC
                      ____________________________________________________________
consensus             CCCACTCCCCTTCTGATCTTGGATCAATTCAAGAAAGTTATTAGTCATTCTTGATCAAGC
 
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rJMSF052P19-          GAAAACTCTTCAATCATGCTCAACTTGTTGAGCGGATTGAAGGCGTGAATCTCCGCACAA
JMSF046N09+                    TCAATCATGCTCAACTTGTTGAGCGGATTGAAGGCGTGAATCTCCGCACAA
                      ____________________________________________________________
consensus             GAAAACTCTTCAATCATGCTCAACTTGTTGAGCGGATTGAAGGCGTGAATCTCCGCACAA
 
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rJMSF052P19-          GAACACTTGCTTGGGAGCACCATCGACCCCTCCCGATTATCATACGAATGAACGGCGGCG
JMSF046N09+           GAACACTTGCTTGGGAGCACCATCGACCCCTCCCGATTATCATANGAATGAACGGCGGCG
                      ____________________________________________________________
consensus             GAACACTTGCTTGGGAGCACCATCGACCCCTCCCGATTATCATACGAATGAACGGCGGCG
 
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rJMSF052P19-          GCCGGCAGCGGCAGCGCCATCTTCCGCGCCACGATCACCGAGTTAATAACGTCATCCGTC
JMSF046N09+           GCCGGCAGCGGCAGCGCCATCTTCCGCGCCACGATCACCGAGTTAATAACGTCATCCGTC
                      ____________________________________________________________
consensus             GCCGGCAGCGGCAGCGCCATCTTCCGCGCCACGATCACCGAGTTAATAACGTCATCCGTC
 
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rJMSF052P19-          GGATGGTACACCGTAAGAACCTCGAATCCTCGGAGATCACAAGGCTCCACCACAGGGTAA
JMSF046N09+           GGATGGTACACCGTAAGAACCTCGAATCCTCGGAGATCACAAGGCTCCACCACAGGGTAA
                      ____________________________________________________________
consensus             GGATGGTACACCGTAAGAACCTCGAATCCTCGGAGATCACAAGGCTCCACCACAGGGTAA
 
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rJMSF052P19-          AGAAAGGCCCGTGCCCCGTGGGCGCTCCGAACCACAAGGAGCGACCCGGGAGCCATGTAT
JMSF046N09+           AGAAAGGCCCGTGCCCCGTGGGCGCTCCGAACCACAAGGAGCGACCCGGGAGCCATGTAT
                      ____________________________________________________________
consensus             AGAAAGGCCCGTGCCCCGTGGGCGCTCCGAACCACAAGGAGCGACCCGGGAGCCATGTAT
 
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rJMSF052P19-          TTAGCCAAGTGGTCTATAGCTCGCTCCTTCTCCTCCTTATCCATACCCACCAGCGCCGCC
JMSF046N09+           TTAGCCAAGTGGTCTATAGCTCGCTCCTTCTCCTCCTTATCCATACCCACCAGCGCCGCC
                      ____________________________________________________________
consensus             TTAGCCAAGTGGTCTATAGCTCGCTCCTTCTCCTCCTTATCCATACCCACCAGCGCCGCC
 
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rJMSF052P19-          AGGAACACCACATCGTACTCCTTCAAGTCGCACGTAACGCCCATGATGTCCGCGGTGTGG
JMSF046N09+           AGGAACACCACATCGTACTCCTTCAAGTCGCACGTAACGCCCATGATGTCCGCGGTGTGG
JMSF052P19+                                   AAGTCGCACGTAACGCCCATGATGTCCGCGGTGTGG
                      ____________________________________________________________
consensus             AGGAACACCACATCGTACTCCTTCAAGTCGCACGTAACGCCCATGATGTCCGCGGTGTGG
 
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rJMSF052P19-          AAGAACATGCGCCCGGAGAGGCCGGGATCCGACCCCACCAACCGCGCCGCCATGGCGTTC
JMSF046N09+           AAGAACATGCGCCCGGAGAGGCCGGGATCCGACCCCACCAACCGCGCCGCCATGGCGTTC
JMSF052P19+           AAGAACATGCGCCCGGAGAGGCCGGGATCCGACCCCACCAACCGCGCCGCCATGGCGTTC
                      ____________________________________________________________
consensus             AAGAACATGCGCCCGGAGAGGCCGGGATCCGACCCCACCAACCGCGCCGCCATGGCGTTC
 
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rJMSF052P19-          GCCGCGGGATCAATGTCGTAGTTGTGGAAATCCG                          
JMSF046N09+           GCCGCGGGATCAATGTCGTAGTTGTGGAAATCCGTGGCCGTGAGGTGGCAGGTGGCCAGG
JMSF052P19+           GCCGCGGGATCAATGTCGTAGTTGTGGAAATCCGTGGCCGTGAGGTGGCAGGTGGCCAGG
                      ____________________________________________________________
consensus             GCCGCGGGATCAATGTCGTAGTTGTGGAAATCCGTGGCCGTGAGGTGGCAGGTGGCCAGG
 
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JMSF046N09+           ACTATCGACGAGAGCGGCAAGGGGCCGGACCCGACAAACGCGAGGCGACGCGGCGCGCCG
JMSF052P19+           ACTATCGACGAGAGCGGCAAGGGGCCGGACCCGACAAACGCGAGGCGACGCGGCGCGCCG
                      ____________________________________________________________
consensus             ACTATCGACGAGAGCGGCAAGGGGCCGGACCCGACAAACGCGAGGCGACGCGGCGCGCCG
 
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JMSF046N09+           CCGCTGTAATGCCTGCTGAGAAGATCAAACTCGAGGAGGCTTAGTTTGAGGTAATTGTTG
JMSF052P19+           CCGCTGTAATGCCTGCTGAGAAGATCAAACTCGAGGAGGCTTAGTTTGAGGTAATTGTTG
                      ____________________________________________________________
consensus             CCGCTGTAATGCCTGCTGAGAAGATCAAACTCGAGGAGGCTTAGTTTGAGGTAATTGTTG
 
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JMSF046N09+           AAGTAAGGGAAAAGAGAGAGATTTTTTAGGGGGTCCGGGAGAGAAGCAAGAATTGTGGAG
JMSF052P19+           AAGTAAGGGAAAAGAGAGAGATTTTTTAGGGGGTCCGGGAGAGAAGCAAGAATTGTGGAG
                      ____________________________________________________________
consensus             AAGTAAGGGAAAAGAGAGAGATTTTTTAGGGGGTCCGGGAGAGAAGCAAGAATTGTGGAG
 
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JMSF046N09+           TAATGGGATTCAAGAAGACCCTCGGCTTCACCACACAACCTTATGAGGTTGGACCTCATT
JMSF052P19+           TAATGGGATTCAAGAAGACCCTCGGCTTCACCACACAACCTTATGAGGTTGGACCTCATT
                      ____________________________________________________________
consensus             TAATGGGATTCAAGAAGACCCTCGGCTTCACCACACAACCTTATGAGGTTGGACCTCATT
 
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JMSF046N09+           TCTT                                                        
JMSF052P19+           TCTTGGATCTTGGAACAGAGCTTAGAGACATCTATAGGGTTTGGTGGGATGCACGTGTGG
                      ____________________________________________________________
consensus             TCTTGGATCTTGGAACAGAGCTTAGAGACATCTATAGGGTTTGGTGGGATGCACGTGTGG
 
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JMSF052P19+           ACTAGCTGTGTGAACAGCGTGTCGACATCCTCGGAGGGCTTCAGGTTCTCCAACCTCGAA
                      ____________________________________________________________
consensus             ACTAGCTGTGTGAACAGCGTGTCGACATCCTCGGAGGGCTTCAGGTTCTCCAACCTCGAA
 
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JMSF052P19+           ATCTCATCGTACAATTCGCAGATTTTTTGTACTACTGGGTTTTTCTGGCAAACCATGTTG
                      ____________________________________________________________
consensus             ATCTCATCGTACAATTCGCAGATTTTTTGTACTACTGGGTTTTTCTGGCAAACCATGTTG
 
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JMSF052P19+           ACACTATGAGGTTAAATTACGCAAAATGGCTAAATAGTTTGAAAATTGTTGATGTTCTCA
                      ____________________________________________________________
consensus             ACACTATGAGGTTAAATTACGCAAAATGGCTAAATAGTTTGAAAATTGTTGATGTTCTCA