| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS008G06 | Sequence | 641 | 001012 (4) | ref|XP_006342104.1| | 3e-68 | PREDICTED: large proline-rich protein BAG6-like isoform X1 [Solanum tuberosum] | |||||
| JMFS022E08 | Sequence | 635 | 001012 (4) | ref|XP_006342104.1| | 1e-57 | PREDICTED: large proline-rich protein BAG6-like isoform X1 [Solanum tuberosum] | |||||
| JMSF008J18 | Sequence | 398 | 001012 (4) | ref|XP_004238408.1| | 1e-20 | PREDICTED: large proline-rich protein BAG6 isoform X2 [Solanum lycopersicum] | 763 | 012381 (7) | ref|XP_009606359.1| | 1e-60 | PREDICTED: casein kinase I isoform delta-like [Nicotiana tomentosiformis] |
| JMSF052N15 | Sequence | 669 | 001012 (4) | ref|XP_006342105.1| | 1e-58 | PREDICTED: large proline-rich protein BAG6-like isoform X2 [Solanum tuberosum] | 900 | 015194 | ref|XP_009762566.1| | 3e-64 | PREDICTED: large proline-rich protein BAG6 isoform X3 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMFS008G06+ GCCTTCTGCTGCTTCATTTCCTTGTGAAGCAAAA
____________________________________________________________
consensus GCCTTCTGCTGCTTCATTTCCTTGTGAAGCAAAA
. : . : . : . : . : . :
JMFS008G06+ GTGGGAGCAGTAACCTGCACGCCAGGATGTTGGCCACCAATCTGGCTCCCAATTCCAACA
JMFS022E08+ CA
JMSF052N15+ CA
____________________________________________________________
consensus GTGGGAGCAGTAACCTGCACGCCAGGATGTTGGCCACCAATCTGGCTCCCAATTCCAACA
. : . : . : . : . : . :
JMFS008G06+ GAGTTTAAAACTGCCCCAATAACCCGACTTAGATCGGGAACAAGACCGCCTCCTTGATCA
JMFS022E08+ GAGTTTAAAACTGCCCCAATAACCCGACTTAGATCGGGAACAAGACCGCCTCCTTGATCA
JMSF052N15+ GAGTTTAAAACTGCCCCAATAACCCGACTTAGATCGGGAACAAGACCGCCTCCTTGATCA
____________________________________________________________
consensus GAGTTTAAAACTGCCCCAATAACCCGACTTAGATCGGGAACAAGACCGCCTCCTTGATCA
. : . : . : . : . : . :
JMFS008G06+ CCAACATTGAAAGTGCCTAGCATAACACTATGCGAAATTTGCCCAATTTGGCTGCGTGAG
JMFS022E08+ CCAACATTGAAAGTGCCTAGCATAACACTATGCGAAATTTGCCCAATTCGGCTGCGTGAG
JMSF052N15+ CCAACATTGAAAGTGCCTAGCATAACACTATGCGAAATTTGCCCAATTCGGCTGCGTGAG
____________________________________________________________
consensus CCAACATTGAAAGTGCCTAGCATAACACTATGCGAAATTTGCCCAATTCGGCTGCGTGAG
. : . : . : . : . : . :
JMFS008G06+ GCACCAGTGGTTGGATCTTGTCCATTAGGTGCAGTAGCCTCTGTAGTGTTGGAACCAGAT
JMFS022E08+ GCACCAGTGGTTGGATCTTGTCCATTAGGTGCAGTAGCCTCTGTAGTGTTGGAACCAGAT
JMSF052N15+ GCACCAGTGGTTGGATCTTGTCCATTAGGTGCAGTAGCCTCTGTAGTGTTGGAACCAGAT
____________________________________________________________
consensus GCACCAGTGGTTGGATCTTGTCCATTAGGTGCAGTAGCCTCTGTAGTGTTGGAACCAGAT
. : . : . : . : . : . :
JMFS008G06+ GAGGATTGTTGCTGGGACAGCTCTCTTACCAAGTGCAATGCATCCCCATTCTCCAAATGA
JMFS022E08+ GAGGATTGTTGCTGGGACAGCTCTCTTACCAAGTGCAATGCATCCCCATTCTCCAAATGA
JMSF052N15+ GAGGATTGTTGCTGGGACAGCTCTCTTACCAAGTGCAATGCATCCCCATTCTCCAAATGA
____________________________________________________________
consensus GAGGATTGTTGCTGGGACAGCTCTCTTACCAAGTGCAATGCATCCCCATTCTCCAAATGA
. : . : . : . : . : . :
JMFS008G06+ TATTCTGAAAGGAGGTGGCCATCCTTCAAAACCTTCCCCCGAAAAATAAGCCTCTGCTGT
JMFS022E08+ TATTCTGAAAGGAGGTGGCCATCCTTCAAAACCTTCCCCCGAAAAATAAGCCTCTGCTGT
JMSF008J18+ TCCTTCAAANCCTTCCCCCGAAAAATAAGCNTCTGCTGT
JMSF052N15+ TATTCTGAAAGGAGGTGGCCATCCTTCAAAACCTTCCCCCGAAAAATAAGCCTCTGCTGT
____________________________________________________________
consensus TATTCTGAAAGGAGGTGGCCATCCTTCAAAACCTTCCCCCGAAAAATAAGCCTCTGCTGT
. : . : . : . : . : . :
JMFS008G06+ ACTACAGGGACACCAGTTTGAGCAGCTACTTTCTCCTTCAAGGCAGAAACTTGAATATTC
JMFS022E08+ ACTACAGGGACACCAGTTTGAGCAGCTACTTTCTCCTTCAAGGCAGAAACTTGAATATTC
JMSF008J18+ ACTACAGGGACACCAGTTTGAGCAGCTACTTTCTCCTTCAAGGCAGAAACTTGAATATTC
JMSF052N15+ ACTACAGGGACACCAGTTTGAGCAGCTACTTTCTCCTTCAAGGCAGAAACTTGAATATTC
____________________________________________________________
consensus ACTACAGGGACACCAGTTTGAGCAGCTACTTTCTCCTTCAAGGCAGAAACTTGAATATTC
. : . : . : . : . : . :
JMFS008G06+ TTGTCCACATGGAAAACATGATTCTGCGAATCTAAGGTCTTGATATTGATCTTAATTGAT
JMFS022E08+ TTGTCCACATGGAAAACATGATTCTGCGAATCTAAGGTCTTGATATTGATCTTAATTGAT
JMSF008J18+ TTGTCCACATGGAAAACATGATTCTGCGAATCTAAGGTCTTGATATTGATCTTAATTGAT
JMSF052N15+ TTGTCCACATGGAAAACATGATTCTGCGAATCTAAGGTCTTGATATTGATCTTAATTGAT
____________________________________________________________
consensus TTGTCCACATGGAAAACATGATTCTGCGAATCTAAGGTCTTGATATTGATCTTAATTGAT
. : . : . : . : . : . :
JMFS008G06+ GATTCAGAAACTCCTCCAGAAGCATTGCTTGTGTTTGGATCCGCAGATGGATGCTGGTCT
JMFS022E08+ GATTCAGAAACTCCTCCAGAAGCATTGCTTGTGTTTGGATCCGCAGATGGATGCTGGTCT
JMSF008J18+ GATTCAGAAACTCCTCCAGAAGCATTGCTTGTGTTTGGATCCGCAGATGGATGCTGGTCT
JMSF052N15+ GATTCAGAAACTCCTCCAGAAGCATTGCTTGTGTTTGGATCCGCAGATGGATGCTGGTCT
____________________________________________________________
consensus GATTCAGAAACTCCTCCAGAAGCATTGCTTGTGTTTGGATCCGCAGATGGATGCTGGTCT
. : . : . : . : . : . :
JMFS008G06+ GCCATGTAGCTTGAAAAGAATTAATGCCTATACAGGAGAGGAGAGAAGATCGAAGACTGA
JMFS022E08+ GCCATGTAGCTTGAAAAGAATTAATGCCTATACAGGAGAGGAGAGAAGATCGAAGACTGA
JMSF008J18+ GCCATGTAGCTTGAAAAGAATTAATGCCTATACAGGAGAGGAGAGAAGATCGAAGACTGA
JMSF052N15+ GCCATGTAGCTTGAAAAGAATTAATGCCTATACAGGAGAGGAGAGAAGATCGAAGACTGA
____________________________________________________________
consensus GCCATGTAGCTTGAAAAGAATTAATGCCTATACAGGAGAGGAGAGAAGATCGAAGACTGA
. : . : . : . : . : . :
JMFS008G06+ AGCGCGA
JMFS022E08+ AGCGCGATTGATATTTTCGTTCAAACACTAAAACGTAACCAACCAGATTTTTGACGTAGA
JMSF008J18+ AGCGCGATTGATATTTTCGTTCAAACACTAAAACGTAACCAACCAGATTTTTGACGTAGA
JMSF052N15+ AGCGCGATTGATATTTTCGTTCAAACACTAAAACGTAACCAACCAGATTTTTGACGTAGA
____________________________________________________________
consensus AGCGCGATTGATATTTTCGTTCAAACACTAAAACGTAACCAACCAGATTTTTGACGTAGA
. : . : . : . : . : . :
JMFS022E08+ GAAAGGGCAAGAGGAGAAATGTGCTGCAGCGAC
JMSF008J18+ GAAAGGGCAAGAGGAGAAATGTGCTGCAGCGACTCTCGTCTGCTTCAAGGAAATCGCCC
JMSF052N15+ GAAAGGGCAAGAGGAGAAATGTGCTGCAGCGACTCTCGTCTGCTTCAAGGAAATCGCCCC
____________________________________________________________
consensus GAAAGGGCAAGAGGAGAAATGTGCTGCAGCGACTCTCGTCTGCTTCAAGGAAATCGCCCC