Contig 001011:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022F03Sequence496001011 (10)ref|XP_006363592.1|7e-36PREDICTED: vacuolar cation/proton exchanger 3-like [Solanum tuberosum]743006865 (12)ref|XP_010668307.1|6e-67PREDICTED: vacuolar cation/proton exchanger 3-like, partial [Beta vulgaris subs
JMFF026B17Sequence559001011 (10)ref|XP_006363592.1|5e-66PREDICTED: vacuolar cation/proton exchanger 3-like [Solanum tuberosum]599006865 (12)ref|XP_006363592.1|2e-24PREDICTED: vacuolar cation/proton exchanger 3-like [Solanum tuberosum]
JMFN005F23Sequence623001011 (10)ref|XP_006363592.1|3e-79PREDICTED: vacuolar cation/proton exchanger 3-like [Solanum tuberosum]
JMSF010C22Sequence326001011 (10)ref|XP_010326090.1|3e-16PREDICTED: LOW QUALITY PROTEIN: vacuolar cation/proton exchanger 3 [Solanum lyc735006865 (12)ref|XP_010668307.1|4e-54PREDICTED: vacuolar cation/proton exchanger 3-like, partial [Beta vulgaris subs
JMSF014M09Sequence435001011 (10)ref|XP_006363592.1|4e-34PREDICTED: vacuolar cation/proton exchanger 3-like [Solanum tuberosum]721006865 (12)ref|XP_010668307.1|2e-61PREDICTED: vacuolar cation/proton exchanger 3-like, partial [Beta vulgaris subs
JMSF024D12Sequence657001011 (10)ref|XP_006363592.1|1e-72PREDICTED: vacuolar cation/proton exchanger 3-like [Solanum tuberosum]775006865 (12)ref|XP_010668307.1|3e-66PREDICTED: vacuolar cation/proton exchanger 3-like, partial [Beta vulgaris subs
JMSF027G08Sequence656001011 (10)ref|XP_006363592.1|4e-51PREDICTED: vacuolar cation/proton exchanger 3-like [Solanum tuberosum]766006865 (12)ref|XP_010668307.1|5e-66PREDICTED: vacuolar cation/proton exchanger 3-like, partial [Beta vulgaris subs
JMSF038E05Sequence680001011 (10)ref|XP_006363592.1|1e-72PREDICTED: vacuolar cation/proton exchanger 3-like [Solanum tuberosum]921006865 (12)ref|XP_006363592.1|2e-80PREDICTED: vacuolar cation/proton exchanger 3-like [Solanum tuberosum]
JMSF049O19Sequence652001011 (10)ref|XP_006363592.1|2e-72PREDICTED: vacuolar cation/proton exchanger 3-like [Solanum tuberosum]681006865 (12)ref|XP_010668307.1|4e-50PREDICTED: vacuolar cation/proton exchanger 3-like, partial [Beta vulgaris subs
JMSF052K13Sequence651001011 (10)ref|XP_006363592.1|1e-72PREDICTED: vacuolar cation/proton exchanger 3-like [Solanum tuberosum]919006865 (12)ref|XP_006363592.1|3e-82PREDICTED: vacuolar cation/proton exchanger 3-like [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049O19+                                                 TGAAATGTNGGCAATGCCGCCG
JMSF038E05+                                               TTTGAAATGTTGGCAATGCCGCCG
                      ____________________________________________________________
consensus                                                 TTTGAAATGTTGGCAATGCCGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049O19+           CACAAAAGAGAAGTTCCAAGAACTAGAAGAAGGTTGGAGAGAATGGAGCCCAGAAGAGAG
JMFN005F23+                                     AAGAAGGTTGGAGAGAATGANGCCCAGAAGAGAG
JMSF038E05+           CACAAAAGAGAAGTTCCAAGAACTAGAAGAAGGTTGGAGAGAATGGAGCCCAGAAGAGAG
JMSF024D12+               AAAGAGAAGTTCCAAGAACTAGAAGAAGGTTGGAGAGAATGGAGCCCAGAAGAGAG
JMSF027G08+               AAAGAGAAGTTCCAAGAACTAGAAGAAGGTTGGAGAGAATGGAGCCCAGAAGAGAG
JMSF052K13+                   AGAAGTTCCAAGAACTAGAAGAAGGTTGGAGAGAATGGAGCCCAGAAGAGAG
                      ____________________________________________________________
consensus             CACAAAAGAGAAGTTCCAAGAACTAGAAGAAGGTTGGAGAGAATGGAGCCCAGAAGAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049O19+           TATTTCACCACGTCCACTTTGTGTTCCATCAGAGCAAATATTGCAATAATCAGCTCTGTA
JMFN005F23+           TATTTCACCACGTCCACTTTGTGTTCCATCAGAGCAAATATTGCAATAATCAGCTCTGTA
JMFF026B17+                                  TTCCATCAGAGCAAATATTGCAATAATCAGCTCTGTA
JMSF038E05+           TATTTCACCACGTCCACTTTGTGTTCCATCAGAGCAAATATTGCAATAATCAGCTCTGTA
JMSF024D12+           TATTTCACCACGTCCACTTTGTGTTCCATCAGAGCAAATATTGCAATAATCAGCTCTGTA
JMSF027G08+           TATTTCACCACGTCCACTTTGTGTTCCATCAGAGCAAATATTGCAATAATCAGCTCTGTA
JMSF052K13+           TATTTCACCACGTCCACTTTGTGTTCCATCAGAGCAAATATTGCAATAATCAGCTCTGTA
                      ____________________________________________________________
consensus             TATTTCACCACGTCCACTTTGTGTTCCATCAGAGCAAATATTGCAATAATCAGCTCTGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049O19+           GCGTTTCCACACGTCGCATTTAGAAGCCCTCCAACTGTTGGACCAGTATGGAATGCGATT
JMFN005F23+           GCGTTTCCACACGTCGCATTTAGAAGCCCTCCAACTGTTGGACCAGTATGGAATGCGATT
JMFF026B17+           GCGTTTCCACACGTCGCATTTAGAAGCCCTCCAACTGTTGGACCAGTATGGAATGCGATT
JMSF038E05+           GCGTTTCCACACGTCGCATTTAGAAGCCCTCCAACTGTTGGACCAGTATGGAATGCGATT
JMSF024D12+           GCGTTTCCACACGTCGCATTTAGAAGCCCTCCAACTGTTGGACCAGTATGGAATGCGATT
JMSF027G08+           GCGTTTCCACACGTCGCATTTAGAAGCCCTCCAACTGTTGGACCAGTATGGAATGCGATT
JMFF022F03+                                                    ACCAGTATGGAATGCGATT
JMSF052K13+           GCGTTTCCACACGTCGCATTTAGAAGCCCTCCAACTGTTGGACCAGTATGGAATGCGATT
                      ____________________________________________________________
consensus             GCGTTTCCACACGTCGCATTTAGAAGCCCTCCAACTGTTGGACCAGTATGGAATGCGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049O19+           TGTTCTGTCAGAAAGCTGATACGTTCCGCCAGTGGAGTAAGTCCAATTAAGCTCAAAGCA
JMFN005F23+           TGTTCTGTCAGAAAGCTGATACGTTCCGCCAGTGGAGTAAGTCCAATTAAGCTCAAAGCA
JMFF026B17+           TGTTCTGTCAGAAAGCTGATACGTTCCGCCAGTGGAGTAAGTCCAATTAAGCTCAAAGCA
JMSF038E05+           TGTTCTGTCAGAAAGCTGATACGTTCCGCCAGTGGAGTAAGTCCAATTAAGCTCAAAGCA
JMSF024D12+           TGTTCTGTCAGAAAGCTGATACGTTCCGCCAGTGGAGTAAGTCCAATTAAGCTCAAAGCA
JMSF027G08+           TGTTCTGTCAGAAAGCTGATACGTTCCGCCAGTGGAGTAAGTCCAATTAAGCTCAAAGCA
JMFF022F03+           TGTTCTGTCAGAAAGCTGATACGTTCCGCCAGTGGAGTAAGTCCAATTAAGCTCAAAGCA
JMSF014M09+                                                       AATTAAGCTCAAAGCA
JMSF052K13+           TGTTCTGTCAGAAAGCTGATACGTTCCGCCAGTGGAGTAAGTCCAATTAAGCTCAAAGCA
                      ____________________________________________________________
consensus             TGTTCTGTCAGAAAGCTGATACGTTCCGCCAGTGGAGTAAGTCCAATTAAGCTCAAAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049O19+           AACACCCATGGCCTGCCATAGTGGCGATAATGAGCATAAATGGCGAAAGGAATGGCGATG
JMFN005F23+           AACACCCATGGCCTGCCATAGTGGCGATAATGAGCATAAATGGCGAAAGGAATGGCGATG
JMFF026B17+           AACACCCATGGCCTGCCATAGTGGCGATAATGAGCATAAATGGCGAAAGGAATGGCGATG
JMSF038E05+           AACACCCATGGCCTGCCATAGTGGCGATAATGAGCATAAATGGCGAAAGGAATGGCGATG
JMSF024D12+           AACACCCATGGCCTGCCATAGTGGCGATAATGAGCATAAATGGCGAAAGGAATGGCGATG
JMSF027G08+           AACACCCATGGCCTGCCATAGTGGCGATAATGAGCATAAATGGCGAAAGGAATGGCGATG
JMFF022F03+           AACACCCATGGCCTGCCATAGTGGCGATAATGAGCATAAATGGCGAAAGGAATGGCGATG
JMSF014M09+           AACACCCATGGCCTGCCATAGTGGCGATAATGAGCATAAATGGCGAAAGGAATGGCGATG
JMSF052K13+           AACACCCATGGCCTGCCATAGTGGCGATAATGAGCATAAATGGCGAAAGGAATGGCGATG
                      ____________________________________________________________
consensus             AACACCCATGGCCTGCCATAGTGGCGATAATGAGCATAAATGGCGAAAGGAATGGCGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049O19+           AAGAGAATGGAAAGCTTAGTCCCAAGAAACACTTCTTGGAGACTGATGAGGAAGTTTTTG
JMFN005F23+           AAGAGAATGGAAAGCTTAGTCCCAAGAAACACTTCTTGGAGACTGATGAGGAAGTTTTTG
JMFF026B17+           AAGAGAATGGAAAGCTTAGTCCCAAGAAACACTTCTTGGAGACTGATGAGGAAGTTTTTG
JMSF038E05+           AAGAGAATGGAAAGCTTAGTCCCAAGAAACACTTCTTGGAGACTGATGAGGAAGTTTTTG
JMSF024D12+           AAGAGAATGGAAAGCTTAGTCCCAAGAAACACTTCTTGGAGACTGATGAGGAAGTTTTTG
JMSF027G08+           AAGAGAATGGAAAGCTTAGTCCCAAGAAACACTTCTTGGAGACTGATGAGGAAGTTTTTG
JMFF022F03+           AAGAGAATGGAAAGCTTAGTCCCAAGAAACACTTCTTGGAGACTGATGAGGAAGTTTTTG
JMSF014M09+           AAGAGAATGGAAAGCTTAGTCCCAAGAAACACTTCTTGGAGACTGATGAGGAAGTTTTTG
JMSF010C22+                                            TCTTGGAGACTGATGAGGAAGTTTTTG
JMSF052K13+           AAGAGAATGGAAAGCTTAGTCCCAAGAAACACTTCTTGGAGACTGATGAGGAAGTTTTTG
                      ____________________________________________________________
consensus             AAGAGAATGGAAAGCTTAGTCCCAAGAAACACTTCTTGGAGACTGATGAGGAAGTTTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049O19+           AGAATGGCACAAGGCAC-TTTTTTGGCCATGGAGTGGTCGGACTTTTTCCGGAGAGAAGA
JMFN005F23+           AGAATGGCACAAGGCAC-TTTTTTGGCCATGGAGTGGTCGGACTTTTTCCGGAGAGAAGA
JMFF026B17+           AGAATGGCACAAGGCAC-TTTTTCGGCCATGGAGTGGTCGGACTTTTTCCGGAGAGAAGA
JMSF038E05+           AGAATGGCACAAGGCAC-TTTTTTGGCCATGGAGTGGTCGGACTTTTTCCGGAGAGAAGA
JMSF024D12+           AGAATGGCACAAGGCAC-TTTTTTGGCCATGGAGTGGTCGGACTTTTTCCGGAGAGAAGA
JMSF027G08+           AGAATGGCACAAGGCACTTTTTTTGGCCATGGAGTGGTCGGACTTTTTCCGGAGAGAAGA
JMFF022F03+           AGAATGGCACAAGGCA--ATTTTTGGCCATGGAGTGGTCGGACTTTTTCCGGAGAGAAGA
JMSF014M09+           AGAATGGCACAAGGCAC-TTTTTTGGCCATGGAGTGGTCGGACTTTTTCCGGAGAGAAGA
JMSF010C22+           AGAATGGCACAAGGCAC-TTTTTTGGCCATGGAGTGGTCGGACTTTTTCCGGAGAGAAGA
JMSF052K13+           AGAATGGCACAAGGCAC-TTTTTTGGCCATGGAGTGGTCGGACTTTTTCCGGAGAGAAGA
                      ____________________________________________________________
consensus             AGAATGGCACAAGGCAC-TTTTTTGGCCATGGAGTGGTCGGACTTTTTCCGGAGAGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049O19+           GGAGGACATATTGTGCGCCGTCCGGCCGTAGCTCTGGCCGTGGCCGTGCCTCATCTCCTT
JMFN005F23+           GGAGGACATATTGTGCGCCGTCCGGCCGTAGCTCTGGCCGTGGCCGTGCCTCATCTCCTT
JMFF026B17+           GGAGGACATATTGTGCGCCGTCCGGCCGTAGCTCTGGCCGTGGCCGTGCCTCATCTCCTT
JMSF038E05+           GGAGGACATATTGTGCGCCGTCCGGCCGTAGCTCTGGCCGTGGCCGTGCCTCATCTCCTT
JMSF024D12+           GGAGGACATATTGTGCGCCGTCCGGCCGTAGCTCTGGCCGTGGCCGTGCCTCATCTCCTT
JMSF027G08+           GGAGGACATATTGTGCGCCGTCCGGCCGTAGCTCTGGCCGTGGCCGTGCCTCATCTCCTT
JMFF022F03+           GGAGGACATATTGTGCGCCGTCCGGCCGTAGCTCTGGCCGTGGCCGTGCCTCATCTCCTT
JMSF014M09+           GGAGGACATATTGTGCGCCGTCCGGCCGTAGCTCTGGCCGTGGCCGTGCCTCATCTCCTT
JMSF010C22+           GGAGGACATATTGTGCGCCGTCCGGCCGTAGCTCTGGCCGTGGCCGTGCCTCATCTCCTT
JMSF052K13+           GGAGGACATATTGTGCGCCGTCCGGCCGTAGCTCTGGCCGTGGCCGTGCCTCATCTCCTT
                      ____________________________________________________________
consensus             GGAGGACATATTGTGCGCCGTCCGGCCGTAGCTCTGGCCGTGGCCGTGCCTCATCTCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049O19+           GCTCAGGAGCTTGATGTTCCCGTTCTCCAGAAGCCACTGCTCATCACGTNCCGTGGAAGC
JMFN005F23+           GCTCAGGAGCTTGATGTTCCCGTTCTCCAGAAGCCACTGCTCATCACGTGCCGTGGAAGC
JMFF026B17+           GCTCAGGAGCTTGATGTTCCCGTTCTCCAGAAGCCACTGCTCATCACGTGCCGTGGAAGC
JMSF038E05+           GCTCAGGAGCTTGATGTTCCCGTTCTCCAGAAGCCACTGCTCATCACGTGCCGTGGAAGC
JMSF024D12+           GCTCAGGAGCTTGATGTTCCCGTTCTCCAGAAGCCACTGCTCATCACGTGCCGTGGAAGC
JMSF027G08+           GCTCAGGAGCTTGATGTTCCCGTTCTCCAGAAGCCACTGCTCATCACGTGCCGTGGAAGC
JMFF022F03+           GCTCAGGAGCTTGATGTTCCCGTTCTCCAGAAGCCACTGCTCATCACGTGCCGTGGAAGC
JMSF014M09+           GCTCAGGAGCTTGATGTTCCCGTTCTCCAGAAGCCACTGCTCATCACGTGCCGTGGAAGC
JMSF010C22+           GCTCAGGAGCTTGATGTTCCCGTTCTCCAGAAGCCACTGCTCATCACGTGCCGTGGAAGC
JMSF052K13+           GCTCAGGAGCTTGATGTTCCCGTTCTCCAGAAGCCACTGCTCATCACGTGCCGTGGAAGC
                      ____________________________________________________________
consensus             GCTCAGGAGCTTGATGTTCCCGTTCTCCAGAAGCCACTGCTCATCACGTGCCGTGGAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049O19+           CATTTTTGCCGATGATGGAGCTTCAGATGAAACGTGGGGATAAGAGTGGCGGCGCCGTTT
JMFN005F23+           CATTTTTGCCGATGATGGAGCTTCAGATGAAACGTGGGGATAAGAGTGGCGGCGCCGTTT
JMFF026B17+           CATTTTTGCCGATGATGGAGCTTCAGATGAAACGTGGGGATAAGAGTGGCGGCGCCGTTT
JMSF038E05+           CATTTTTGCCGATGATGGAGCTTCAGATGAAACGTGGGGATAAGAGTGGCGGCGCCGTTT
JMSF024D12+           CATTTTTGCCGATGATGGAGCTTCAGATGAAACGTGGGGATAAGAGTGGCGGCGCCGTTT
JMSF027G08+           CATTTTTGCCGATGATGGAGCTTCAGATGAAACGTGGGGATAAGAGTGGCGGCGCCGTTT
JMFF022F03+           CATTTTTGCCGATGATGGAGCTTCAGATGAAACGTGGGGATAAGAGTGGCGGCGCCGTTT
JMSF014M09+           CATTTTTGCCGATGATGGAGCTTCAGATGAAACGTGGGGATAAGAGTGGCGGCGCCGTTT
JMSF010C22+           CATTTTTGCCGATGATGGAGCTTCAGATGAAACGTGGGGATAAGAGTGGCGGCGCCGTTT
JMSF052K13+           CATTTTTGCCGATGATGGAGCTTCAGATGAAACGTGGGGATAAGAGTGGCGGCGCCGTTT
                      ____________________________________________________________
consensus             CATTTTTGCCGATGATGGAGCTTCAGATGAAACGTGGGGATAAGAGTGGCGGCGCCGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049O19+           GTTAAGTTGATTGATGATAGTAAGATAGAT                              
JMFN005F23+           GTTAAGTTGATTGATGATAGTAAGATAGATGTCTCAATCTGTTGAGACTG          
JMFF026B17+           GTTAAGTTGATTGATGATAGTAAGATAGATGTCTCAATTTGTT                 
JMSF038E05+           GTTAAGTTGATTGATGATAGTAAGATAGATGTCTCAATCTGTTGAGACTGTAGTCT    
JMSF024D12+           GTTAAGTTGATTGATGATAGTAAGATAGATGTCTCAATCTGTTGAGACTGTAGTCTGGT 
JMSF027G08+           GTTAAGTTGATTGATGATAGTAAGATAGATGTCTCAATCTGTTGAGACTGTAGTCTGGTC
JMFF022F03+           GTTAAGTTGATTGATGATAGTAAGATAGATGTCTCAATCTGTTGAGACTGTAGTCTGGT 
JMSF014M09+           GTTAAGTTGATTGATGATAGTAAGATAGATGTCTCAATCTGTTGAGACTGTAGTCTGGTC
JMSF010C22+           GTTAAATTGATTGATGATAGTAAGATAGATGTCTCAATCTGTTGAGACTGTAGTCTGGTC
JMSF052K13+           GTTAAGTTGATTGATGATAGTAAGATAGATGTCTCAATCTGTTGAGACTGTAGTCTGGTC
                      ____________________________________________________________
consensus             GTTAAGTTGATTGATGATAGTAAGATAGATGTCTCAATCTGTTGAGACTGTAGTCTGGTC