Contig 001006:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010G23Sequence267001006 (3)706003015 (3)emb|CDP14910.1|4e-102unnamed protein product [Coffea canephora]
JMSF023J20Sequence610001006 (3)ref|XP_002267234.1|3e-48PREDICTED: polynucleotide 5'-hydroxyl-kinase NOL9 [Vitis vinifera] emb|CBI15309.746003015 (3)emb|CDP14910.1|5e-104unnamed protein product [Coffea canephora]
JMSF052A18Sequence656001006 (3)ref|XP_002267234.1|8e-59PREDICTED: polynucleotide 5'-hydroxyl-kinase NOL9 [Vitis vinifera] emb|CBI15309.926003015 (3)ref|XP_009631975.1|6e-138PREDICTED: polynucleotide 5'-hydroxyl-kinase NOL9 isoform X1 [Nicotiana tomento

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF023J20+ AAGGCATGGAATTG
JMSF052A18+ TGATGAAATATCGCCAAAGAAAAAGCATCTCTCTGGTGTTTTAAGGCATGGAATTG
                      ____________________________________________________________
consensus TGATGAAATATCGCCAAAGAAAAAGCATCTCTCTGGTGTTTTAAGGCATGGAATTG
 
. : . : . : . : . : . :
JMSF023J20+ TCAAATCAGCAGGTATTTTGTCAATTATTGTGAGTGATAGGAAACCAGGTGGAGTAAACT
JMSF052A18+ TCAAATCAGCAGGTATTTTGTCAATTATTGTGAGTGATAGGAAACCAGGTGGAGTAAACT
                      ____________________________________________________________
consensus TCAAATCAGCAGGTATTTTGTCAATTATTGTGAGTGATAGGAAACCAGGTGGAGTAAACT
 
. : . : . : . : . : . :
JMSF023J20+ CTGTCTGCCCAACATCGGTATCCAAATAAGCCACTTTTCTATACCTTTTGAGAAGAACAT
JMSF052A18+ CTGTCTGCCCAACATCGGTATCCAAATAAGCCACTTTTCTATACCTTTTGAGAAGAACAT
                      ____________________________________________________________
consensus CTGTCTGCCCAACATCGGTATCCAAATAAGCCACTTTTCTATACCTTTTGAGAAGAACAT
 
. : . : . : . : . : . :
JMSF023J20+ GAAGGAGGTGGCGGGAAAACGTAGTCTTGCCACAATTTTTGGGGCCGCAGATCAAGGAAA
JMSF052A18+ GAAGGAGGTGGCGGGAAAACGTAGTCTTGCCACAATTTTTGGGGCCGCAGATCAAGGAAA
                      ____________________________________________________________
consensus GAAGGAGGTGGCGGGAAAACGTAGTCTTGCCACAATTTTTGGGGCCGCAGATCAAGGAAA
 
. : . : . : . : . : . :
JMSF023J20+ CCGGTGGGGGTGAAGTAACAGAATCATAGGCTATGGTGTCGGCAGTATCGGACCATTCGT
JMSF052A18+ CCGGTGGGGGTGAAGTAACAGAATCATAGGCTATGGTGTCGGCAGTATCGGACCATTCGT
                      ____________________________________________________________
consensus CCGGTGGGGGTGAAGTAACAGAATCATAGGCTATGGTGTCGGCAGTATCGGACCATTCGT
 
. : . : . : . : . : . :
JMSF023J20+ TGGGTATGATAATATCCGGTGATGGAATCTCATTTTCCAAAGCTGAAGCCATCCCTCTCT
JMSF052A18+ TGGGTATGATAATATCCGGTGATGGAATCTCATTTTCCAAAGCTGAAGCCATCCCTCTCT
                      ____________________________________________________________
consensus TGGGTATGATAATATCCGGTGATGGAATCTCATTTTCCAAAGCTGAAGCCATCCCTCTCT
 
. : . : . : . : . : . :
JMSF023J20+ CTATTATCTCTCTCCTCAATGCATGTGCCCTCAGAGACAAAATCAAAATCTTGGTTTGCT
JMSF010G23+ CTTGGTTTGCT
JMSF052A18+ CTATTATCTCTCTCCTCAATGCATGTGCCCTCAGAGACAAAATCAAAATCTTGGTTTGCT
                      ____________________________________________________________
consensus CTATTATCTCTCTCCTCAATGCATGTGCCCTCAGAGACAAAATCAAAATCTTGGTTTGCT
 
. : . : . : . : . : . :
JMSF023J20+ CAGACGCTAATCTATAGAGACTTTAGAAAGGTGCTGATATGTAGAGAGATGTCGCTGGAG
JMSF010G23+ CAGACGCTAATCTATAGAGACTTTAGAAAGGTGCTGATATGTAGAGAGATGTCGCTGGAG
JMSF052A18+ CAGACGCTAATCTATAGAGACTTTAGAAAGGTGCTGATATGTAGAGAGATGTCGCTGGAG
                      ____________________________________________________________
consensus CAGACGCTAATCTATAGAGACTTTAGAAAGGTGCTGATATGTAGAGAGATGTCGCTGGAG
 
. : . : . : . : . : . :
JMSF023J20+ GGGACGGGTTACTGGGTGTGAGAGGGTTTCAGCGAGTTCTACTATCTCTCCCCTCAATGC
JMSF010G23+ GGGACGGGTTACTGGGTGTGAGAGGGTTTCAGCGAGTTCTACTATCTCTCCCCTCAATGC
JMSF052A18+ GGGACGGGTTACTGGGTGTGAGAGGGTTTCAGCGAGTTCTACTATCTCTCCCCTCAATGC
                      ____________________________________________________________
consensus GGGACGGGTTACTGGGTGTGAGAGGGTTTCAGCGAGTTCTACTATCTCTCCCCTCAATGC
 
. : . : . : . : . : . :
JMSF023J20+ ATTTGCACTAAGAAGTCAGAACAACGCGACATGCATGAGTGTTTACTGAACAGAGGGCAC
JMSF010G23+ ATTTGCACTAAGAAGTCAGAACAACGCGACATGCATGAGTGTTTACT
JMSF052A18+ ATTTGCACTAAGAAGTCAGAACAACGCGACATGCATGAGTGTTTACTGAACAGAGGGCAC
                      ____________________________________________________________
consensus ATTTGCACTAAGAAGTCAGAACAACGCGACATGCATGAGTGTTTACTGAACAGAGGGCAC
 
. : . : . : . : . : . :
JMSF023J20+ ATTGATAGTGTGATACTTGGGAGTAGGGTTGCGAACGAGCTGAGCGGACGGGCTC
JMSF052A18+ ATTGATAGTGTGATACTTGGGAGTAGGGTTGCGAACGAGCTGAGCGGACGGGCTCAAGTC
                      ____________________________________________________________
consensus ATTGATAGTGTGATACTTGGGAGTAGGGTTGCGAACGAGCTGAGCGGACGGGCTCAAGTC