Contig 001006:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023J20+                                                         AAGGCATGGAATTG
JMSF052A18+               TGATGAAATATCGCCAAAGAAAAAGCATCTCTCTGGTGTTTTAAGGCATGGAATTG
                      ____________________________________________________________
consensus                 TGATGAAATATCGCCAAAGAAAAAGCATCTCTCTGGTGTTTTAAGGCATGGAATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023J20+           TCAAATCAGCAGGTATTTTGTCAATTATTGTGAGTGATAGGAAACCAGGTGGAGTAAACT
JMSF052A18+           TCAAATCAGCAGGTATTTTGTCAATTATTGTGAGTGATAGGAAACCAGGTGGAGTAAACT
                      ____________________________________________________________
consensus             TCAAATCAGCAGGTATTTTGTCAATTATTGTGAGTGATAGGAAACCAGGTGGAGTAAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023J20+           CTGTCTGCCCAACATCGGTATCCAAATAAGCCACTTTTCTATACCTTTTGAGAAGAACAT
JMSF052A18+           CTGTCTGCCCAACATCGGTATCCAAATAAGCCACTTTTCTATACCTTTTGAGAAGAACAT
                      ____________________________________________________________
consensus             CTGTCTGCCCAACATCGGTATCCAAATAAGCCACTTTTCTATACCTTTTGAGAAGAACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023J20+           GAAGGAGGTGGCGGGAAAACGTAGTCTTGCCACAATTTTTGGGGCCGCAGATCAAGGAAA
JMSF052A18+           GAAGGAGGTGGCGGGAAAACGTAGTCTTGCCACAATTTTTGGGGCCGCAGATCAAGGAAA
                      ____________________________________________________________
consensus             GAAGGAGGTGGCGGGAAAACGTAGTCTTGCCACAATTTTTGGGGCCGCAGATCAAGGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023J20+           CCGGTGGGGGTGAAGTAACAGAATCATAGGCTATGGTGTCGGCAGTATCGGACCATTCGT
JMSF052A18+           CCGGTGGGGGTGAAGTAACAGAATCATAGGCTATGGTGTCGGCAGTATCGGACCATTCGT
                      ____________________________________________________________
consensus             CCGGTGGGGGTGAAGTAACAGAATCATAGGCTATGGTGTCGGCAGTATCGGACCATTCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023J20+           TGGGTATGATAATATCCGGTGATGGAATCTCATTTTCCAAAGCTGAAGCCATCCCTCTCT
JMSF052A18+           TGGGTATGATAATATCCGGTGATGGAATCTCATTTTCCAAAGCTGAAGCCATCCCTCTCT
                      ____________________________________________________________
consensus             TGGGTATGATAATATCCGGTGATGGAATCTCATTTTCCAAAGCTGAAGCCATCCCTCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023J20+           CTATTATCTCTCTCCTCAATGCATGTGCCCTCAGAGACAAAATCAAAATCTTGGTTTGCT
JMSF010G23+                                                            CTTGGTTTGCT
JMSF052A18+           CTATTATCTCTCTCCTCAATGCATGTGCCCTCAGAGACAAAATCAAAATCTTGGTTTGCT
                      ____________________________________________________________
consensus             CTATTATCTCTCTCCTCAATGCATGTGCCCTCAGAGACAAAATCAAAATCTTGGTTTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023J20+           CAGACGCTAATCTATAGAGACTTTAGAAAGGTGCTGATATGTAGAGAGATGTCGCTGGAG
JMSF010G23+           CAGACGCTAATCTATAGAGACTTTAGAAAGGTGCTGATATGTAGAGAGATGTCGCTGGAG
JMSF052A18+           CAGACGCTAATCTATAGAGACTTTAGAAAGGTGCTGATATGTAGAGAGATGTCGCTGGAG
                      ____________________________________________________________
consensus             CAGACGCTAATCTATAGAGACTTTAGAAAGGTGCTGATATGTAGAGAGATGTCGCTGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023J20+           GGGACGGGTTACTGGGTGTGAGAGGGTTTCAGCGAGTTCTACTATCTCTCCCCTCAATGC
JMSF010G23+           GGGACGGGTTACTGGGTGTGAGAGGGTTTCAGCGAGTTCTACTATCTCTCCCCTCAATGC
JMSF052A18+           GGGACGGGTTACTGGGTGTGAGAGGGTTTCAGCGAGTTCTACTATCTCTCCCCTCAATGC
                      ____________________________________________________________
consensus             GGGACGGGTTACTGGGTGTGAGAGGGTTTCAGCGAGTTCTACTATCTCTCCCCTCAATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023J20+           ATTTGCACTAAGAAGTCAGAACAACGCGACATGCATGAGTGTTTACTGAACAGAGGGCAC
JMSF010G23+           ATTTGCACTAAGAAGTCAGAACAACGCGACATGCATGAGTGTTTACT             
JMSF052A18+           ATTTGCACTAAGAAGTCAGAACAACGCGACATGCATGAGTGTTTACTGAACAGAGGGCAC
                      ____________________________________________________________
consensus             ATTTGCACTAAGAAGTCAGAACAACGCGACATGCATGAGTGTTTACTGAACAGAGGGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF023J20+           ATTGATAGTGTGATACTTGGGAGTAGGGTTGCGAACGAGCTGAGCGGACGGGCTC     
JMSF052A18+           ATTGATAGTGTGATACTTGGGAGTAGGGTTGCGAACGAGCTGAGCGGACGGGCTCAAGTC
                      ____________________________________________________________
consensus             ATTGATAGTGTGATACTTGGGAGTAGGGTTGCGAACGAGCTGAGCGGACGGGCTCAAGTC